Basic Information

Gene Symbol
ct
Assembly
GCA_035045725.1
Location
JAWNOU010000044.1:3226656-3249998[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 5.5e-27 5.5e-23 80.9 0.0 3 72 704 774 702 779 0.95
2 3 5.5e-32 5.5e-28 97.0 0.0 3 77 1183 1258 1181 1260 0.96
3 3 3.4e-31 3.4e-27 94.4 0.0 3 76 1451 1525 1449 1528 0.96

Sequence Information

Coding Sequence
ATGCCAACGAGCCGGCCCGTCTATTGCACAAACAAAGCCACAACGAGCCAGCATATGAGGCAAGTGGCACAATGTTCGCGTCCTGCCGCAGCACGCGTCACGCCCCTGCCCACGCCGTTGCCAGAGCTCGACCGGCAAGTCCTTAACATTAAAGCACTTTTGGATGAGTTGCAACGCCTGCGCGCTCTGGAACAAACTCACCTGATACAAATCCAGAGGCTCGAAGAGCATTTGGAGGTGAAGCGACAGCATATTATGCGTTTGGAAGCGCGCTTGGATAAGCAACAGATAAATGAGGCCCTCGCCGAGGCTACTGCGTTGGCGGCCGCTGTTAATGCAGCCgcaacaaataataacaacaatagcaacagcaacaacaataacaacagcaacaataacaacaatcacaGTAGCCAGAGCAGCGACAATAACAACGTATTCAAAACAGAACTAACATCGACCCATCAGCACaacgacgatgatgacgatgacgatgacaatGATCATGATAATGAGCTGCGCGATGCCGACGATGACGAGGATATAGACAACAGCGAGCAGCAACATACCGCCATGGTAAACAATCGGCTCGACGATGCAACCGATAGGGATGATGCCGAGGAGCAGGATGCCGAAATGTCCaatgccacagccacagcggAGAGCAATGAGCTGAATATCAAAAAAGAGCAGCACAGTCCACTGGACCTAAATGTACTCAGTCCACAGTCGGCCATTGCCACAGCCGCGgcggccgcagcagccgctgcctgCGCCAACGATCCCAACAAATTCCAAGCTCTGCTCCTGGAACGCACCAAAGCACTGGCCGCCGAGGCGCTCAAGAATGGCACCAGCGAGCCAGCCAGCGATGAAatgccgcaacaacaacaagccgtAGACGCAGCAACAGCTGATCATGTGGCAGTagaagaaacagcagcagaaacaacagcagcagcagcagcagcagctacaggagcagcagctacagccaCTGCCAAGCcagaaacaaagaaaaacattgTGGAAACGCCTGAGAATGAAACATTGGCCGAGGCCAATTTGCATCCCAAAATCGAAATCTTAGACGCAGATGAGGGAGCCACTGAGGCCGCAGCTGGCCAAACGCTGGAAGAGCAGCTGGTCAACAGCTATTGGAGGCGTGGCTTTGAAACGAgctcagcaacagcagcagctgcaacagggAGCAAAACGCCAACAATTTATCAAAATGCCAATGcggtgcagcagcaactgttgccgccgccaccgccgccgcctccgccgccacagcagctacaacaacaacaacaacagcaacaacaacaacactatcaacagcaacaacatggaCCCTCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCGCACGCCTAGATGCCGCATCAcagcaccagctccagcagcagcagcagcaacagccacaactgCATCAACATctccacaacagcagcaatagcagcaacagcagcgcagcCGGCAGCGATCCACtgaatcatcatcatcatggccACCACCATGGCCATTCGCATGGACAGCTTTTGCATGCGGGACACCATCTGCATCATGGCGCCGACTCGAACTCATCCAGCGCCAACAGCACGCCAAATAGCACCGCCCAACTGGCAGCCAGCATTGCCAGCACGCTGAACGGCAATAAGTCGCTCTTGCAGGCAGCGGCCGCTGCCAATGTggccgccgctgccgttgccgaggacaacaataacagtCTGACGCCGAACGCAAATGCGGCAGTTGCCGCCGCGGCGATGGCTGCACATGCACAGCATGCCGCCGCACTGGGTGCACCCAATTTTCTGCCCAATCTGCCCAGCTTGCCGGCATTCCAGTTTgcggccgcagcagccgctggcCAGGATGCACGTGCGCATTTTCGGTTTGCGGATGCtgaactgcaactgcagccggGCGTCTCGATGGCCGGCCGACTGGGTGAATCGCTGATACCCAAAGGTGATCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAATATGCGAACCAGGCGCTCGATACGCTACACATTTCGCGGCGCGTACGCGAGCTGCTCTCCGTGCACAACATCGGGCAACGTCTGTTTGCTAAATACATATTGGGCCTGTCCCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCAAAGCCCTGGGATAAGCTGACCGAGAAGGGTCGTGACAGCTACCGCAAGATGCATGCCTGGGCCTGTGATGATAATGCCGTCATGCTGCTCAAATCCCTCATACCCAAGAAAGATTCCGGACTGCCACAGTATGCTGGTCGCGGCGCTGGCGGCGATGATTCCATGTCCGAGGATCGCCTCGCACACATACTCAGCGAGGCCTCGTCCCTGATGAAGAGCAACGTGGTtgccgcccagcagcagcaggagcatcAGCGTCGCCATGCCGGCGACGATACACACAGCAATGAGGACAGCAAATCGCCGCCACAGAGCTGCACCTCCCCCTTTTTCAAGGTGGAACATCAgatcaagcagcagcagcagcagctgcatgtcTCCGAGCATGCGCAGCGTGAGCAGCGCGAAgcggccgctgccgccgccgccgtagccgtgcaccagcagcagcagcaacgcgaGCAGCGCGAACAGCGTGAAGCCGCGCAgcgtgagcagcagcagcgtttgCGTCACGAGGATCTGGCACAGGACAAAATGGCGCGTCTCTATCAGGAGCTAATGGCGCGTACTCCGCGCGAAGCAGCCTTCCCCAGCTTTTTGTTGTCGCCGTTCTTTGGCGGAGCCGCGGCCATGCCAGGAGCAGCCGGCAATCCATTCCCCGCGGCAATGGCCGCCGATGAGAATATGCGTCATGCATTCGAGCGTGAGATTGttaagctgcaacagcagcagcagcagcagcaacagcaggcgcAGGCTGCCAGTTTCCCCAACTTTTCCAGTTTGAtagcactgcagcagcaggtgctGAACGGTGCGCAGGATTTGTCGCTGGCCGGCAAGGATATTAAATTGAACGGACAGCGCTCGTCCCTGGAGCagcacagcggcagcagcagctcaaaagATGGCGAACGCGGCGACGATGCTGATCGCAGTTTCCCAGCACTGCCACATGTTCGCAAATCCGAGGGGGGCAACACGCCTGCACcgccagcaccaccagcaccgcCCGCcgcagtcagcagcagcaatccaAATGCcgcggcagccgcagccgttGCCGGCGGTCATGGCAGCAACTCGGCGGCACCCAGTCCATTGAGCAACTCGATATTACCGCCGGCTCTGAGCAGCCAGGGCGAGGAGTTTGCAGCGACAGCGAGTCCCCTGCAACGGATGGCATCCATAACCAATTCACTGATCACACAGCCACCGGTTACGCCGCATCATGCACAGCCACAGCGGCCCACAAAGGCGGTGCTGCCACCCATTACCCAGCAGCAGTTCGATATGTTCAACAATCTGAACACGGAGGACATTGTGCGGCGCGTCAAGGAGGCGCTCTCTCAGTACAGCATCTCGCAGCGGCTATTCGGCGAATCCGTGTTGGGTCTGTCGCAGGGTTCCGTGTCCGATCTGCTGGCCAGGCCAAAGCCCTGGCACATGCTCACCCAGAAGGGACGCGAGCCGTTCATACGCATGAAAATGTTTCTCGAGGATGAGAATGCGGTGCACAAGCTGGTCGCCAGTCAGTACAAGATAGCGCCCGAGAAGCTGATGCGCACGGGCAGCTATAGCGGCAGCCCTCAGATGCCGCAGGGACTGGCCAACAAGATGCAGGCCACGCTACCCATGCAGAAGATGATGAACGAACTGAAGCTACAGGAGCCAGCCCAAGCGCAGCACATCATGCAACAGATGCACGCAGCGGCCGCAATGTCAGCGgccatgcaacagcagcaacaggcagcGGCTGCCCAAGCCGCCGCCGTGCAGcaggcccaggcccaagcCCAGGCACAgcagagccagcagcagcagcaggcccagcagcaggcacagcagcaggcacagctACTGCATCATCAAAATATGCTGCTGACATCGCCGGGTTTGCCGCCACAGCATGCAATCAGTCTGCCAGCGGCCAGCACGCCCGGTGGTCAGCCCGTTGGTAATCCGGCTGCAGCCTCCACGCCGGTCAGCGGCGAGAAGAAGCCGATGATGATGCCGGTGCATGGTGGAGCACATGCGCCGAATGCCATGCGCAGTCTGCATCAGCATATGTCGCCAACCGTATATGAGATGGCCGCATTGACACAGGATCTGGACACGCACGATATAACCACCAAGATTAAGGAGGCGCTGCTCGCCAACAACATTGGCCAGAAGATCTTTGGCGAAGCGGTGTTAGGGCTATCGCAGGGCTCCGTGTCGGAGCTGCTTAGCAAACCGAAGCCCTGGCACATGCTCTCCATCAAGGGTCGCGAGCCGTTCATCCGCATGCAGCTTTGGCTGAGCGATGCCAACAATGTGGAGCGTCTGCAGCTGCTGAAGAACGAGCGACGGGAGGCGAGCAAGCGCCGACGCAGCACCGGTCCCAATCAACAGGACAACAGCAGCGATACGTCGAGCAATGATACGAACGATTTCTATACGAGCAGCCCGGGTCCGGGTTCGGTGGGTTCATCGGTGGGCGGTGCACCGCCCAGCAAGAAGCAGCGTGTGCTCTTCTCTGAGGAGCAAAAGGAGGCGCTGCGCTTGGCCTTTGCCCTCGATCCGTACCCAAATGTTGGCACAATTGAGTTTCTGGCCAACGAGCTAAGCCTGGCCACGCGCACCATCACCAACTGGTTCCACAATCATCGCATGCGGCTCAAGCAGCAGGTCCCCCACGGCCAGCCTGGCCAGGACAATCCCATACCCAGTCGCGAGAACACCAATGCCACGCCATTCGATCCCGTCCAGTTTCGCatactgctgcagcagcgtctCGTCGAGCTACACAAGGAGCGCATGGGTCTGAGTGGTGCGCCCATACCATACCCACCGTACTTTGCCGCCGCCGCGCTGCTTGGACGCAGCCTGGCTGGCATACCGGgcgctgcagcggctgctggtgcggcggcagctgcggctgctgcggtcGGCGCCGCCGGCGGTGATGAGCTGCAGGCACTGAATCAGGCCTTCAAGGAGCAGATGAGCGGACTGGATTTGTCGATGCCATCGCTGAAGCGCGAGCGCACCGATGACTATCAGGATGAACTGGAGCTGGATGCCAGCGCTCACAATATGAGCGACAACGAGTCGATTGAGGGCAGCCACGAGCCGGAGAGCACGCCCATATCTGACTATGAAAAGGCGCTGCAGAAGTCCGCGCTCGCTtcagccgccgccgctgccgcctaCATGAGCAATGCGGCTCGCAGTTCGCGTCGCAAGCCGGCGGCACCACAGTGGGTCAATCCAGCGGCCGCTGGCACGCccgcagcagctggcgcagctATCGCCGCTGTTGgcggcgtcgctgccggcgacagcagcagcaacagcgagcGCATCATCAACGGCGTCTGCGTCATGCAGGCCTCCGATTACGGTCGCGATGAGAGCGACAGCGTCAAGGGCGGCGACACCAATGCAGATGCGGACCACGAGGATCATGCGCAGCTGGAGATTGATCAGCGCTTCATGGAGCCCGAGGTTCACATCAAGCAGGAGGAGAACGACGATGACGAACAGTCGTCgctggcgcagctgcagcagccggaCGAGGATGCCTTGCGCCTCGCCAGCGATGCGGAAAAGCAGCTGAAGGTAATCAACGAGGAGAAGCTGCGACTAGTGCGCGTGCGTCGGCTGAGCAGCAATGGTGACGCCGAAGAGCTCTGCGCCGCAGCGCAGcaggcgacagcagcagcagcagcagcggcgccggCAACAGCCGCGTGGAACTACTAA
Protein Sequence
MPTSRPVYCTNKATTSQHMRQVAQCSRPAAARVTPLPTPLPELDRQVLNIKALLDELQRLRALEQTHLIQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNSNSNNNNNSNNNNNHSSQSSDNNNVFKTELTSTHQHNDDDDDDDDNDHDNELRDADDDEDIDNSEQQHTAMVNNRLDDATDRDDAEEQDAEMSNATATAESNELNIKKEQHSPLDLNVLSPQSAIATAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGTSEPASDEMPQQQQAVDAATADHVAVEETAAETTAAAAAAATGAAATATAKPETKKNIVETPENETLAEANLHPKIEILDADEGATEAAAGQTLEEQLVNSYWRRGFETSSATAAAATGSKTPTIYQNANAVQQQLLPPPPPPPPPPQQLQQQQQQQQQQHYQQQQHGPSSTVLLSQLVNSTFSHANHSSCSNSKSARLDAASQHQLQQQQQQQPQLHQHLHNSSNSSNSSAAGSDPLNHHHHGHHHGHSHGQLLHAGHHLHHGADSNSSSANSTPNSTAQLAASIASTLNGNKSLLQAAAAANVAAAAVAEDNNNSLTPNANAAVAAAAMAAHAQHAAALGAPNFLPNLPSLPAFQFAAAAAAGQDARAHFRFADAELQLQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSEDRLAHILSEASSLMKSNVVAAQQQQEHQRRHAGDDTHSNEDSKSPPQSCTSPFFKVEHQIKQQQQQLHVSEHAQREQREAAAAAAAVAVHQQQQQREQREQREAAQREQQQRLRHEDLAQDKMARLYQELMARTPREAAFPSFLLSPFFGGAAAMPGAAGNPFPAAMAADENMRHAFEREIVKLQQQQQQQQQQAQAASFPNFSSLIALQQQVLNGAQDLSLAGKDIKLNGQRSSLEQHSGSSSSKDGERGDDADRSFPALPHVRKSEGGNTPAPPAPPAPPAAVSSSNPNAAAAAAVAGGHGSNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHAQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPAQAQHIMQQMHAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAQAQQSQQQQQAQQQAQQQAQLLHHQNMLLTSPGLPPQHAISLPAASTPGGQPVGNPAAASTPVSGEKKPMMMPVHGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPSLKRERTDDYQDELELDASAHNMSDNESIEGSHEPESTPISDYEKALQKSALASAAAAAAYMSNAARSSRRKPAAPQWVNPAAAGTPAAAGAAIAAVGGVAAGDSSSNSERIINGVCVMQASDYGRDESDSVKGGDTNADADHEDHAQLEIDQRFMEPEVHIKQEENDDDEQSSLAQLQQPDEDALRLASDAEKQLKVINEEKLRLVRVRRLSSNGDAEELCAAAQQATAAAAAAAPATAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00495757;
90% Identity
iTF_00563076;
80% Identity
iTF_00506007;