Basic Information

Gene Symbol
JARID2
Assembly
GCA_035045725.1
Location
JAWNOU010000177.1:17367761-17375761[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.7e-22 1.5e-18 67.1 0.0 6 89 1881 1962 1876 1962 0.92

Sequence Information

Coding Sequence
ATGGTTGTCTCAAAAGACAACAAGCGTCGCCGTAAGGAAACGGAGACACCGCCAACGTCAACgtcggtggcggcggcggtgacTGTGGCTGTGGAGTCATCACCCGAGATGCCTAAAAGAACGAAGGTGCAGGCACAGCGTAAGTTCGCGCAAGGCCAGAGCGCGCCCAGCGCTGCGGGCCCATTCAGTGCGGCCAgcgtcgcagcagctgcagctgcagcgtctGGACCAAGCACATCCACAGAAAGCCACCAGCCGCCAATTGAGATATTGCCGAACAAGTGTCCCAAGCCGCAGgattttttaacatttctcTGCTTTCGCGGCACCTCAGCGCTTCCAGCCCACTTGGACTATTTGAATCAGGGCAAATCCAAACCAAACGAGCTCCCGCCGAGTAGcgacgccagcaacaacaacaacaacaataagaaaaagaacaacagcagcagcagcagcaagaagaagcgCGGCAGACCTGCCaaaactgcaacagcaaaagctgccgttgagcaactgcagcagcaggttCAGCAGGTGCCGCAGTTGGCGGCGAATGATAAAACGGCTAGTGATAAAATTGAGGCGGTGACGCCGCTGCCGGCGGCGCCTCTGCTGCTGGCGGGAGCTGTGCGCAAACGCGCCGAGGTGATAGCCGAGGGAAATAGACGAGGCGCAAGGCGTCCGGAGACATTGAAACGTCGTTCGAATCGCGCCAACAACAGGGAAAAGGATGATGAGCCCGAGCATCAGAAGCGGGATAAAGCTGATGCAGCTGAGCACGGCAAAGAGGATGAGGCGCAGGGTGAGGATGAGGAAGACGATGACGAATTCTATTCGGCGCACGATGCCAGCTCACGGAATGGCGGTGCCGACGACACGCTCTCCAAGTCGGAAACCACGAACTCGAATGCCAAGCGCGGACGCAGCCAAGCAGCGAGCAGAAAGGCAGCTGCATCCCATTCACCAGCTGCCACAGACAACAGCGCCGGCAAGGATAAGGATAAGGAAAAGGGGCCAGTGAAGCGTGTGCGGCAACGTGAATCGCCCATATTTATACCATCACCGGAATCTTCCGGGCGCATGACACGACAACGTGCTTTTTTTGAGCCCGTCAAGGTGCCGCCCAAGCAGGAGCCGCAGGACAATGAGCACCAGGAAAAGGAGAAGGAGCTGCAGGAGCAGAAAAaaccagctgcagcaacagagTCCAAAAAACAACAGCCTGAGATCAGCAAGGAGAAGACGAACTCCAGCATTTATGCCAAAGACGcggccaagcagcagctggaaaatgGAGGTACAGCAACTGCTGCGGCCGCGGCTGAACAGCAAAAGGGTCTCAATGTGTTCGACTTCAGCTCCGATGATGAGCAGCCGCTGGCCAAGGCCATAAAGCTGAAAAAGGGTGGCAAAAAGGGCGGGGCtgccggagctggagcagcagcagcagcggccacaACCAGCGCACGCGGACGCAAATCAGCTGGGGGATCGgcaaaaaaacagcagcagcgggaggaAGAGAAGGCAGCGATGCCTTCTGCCACGGCCAGCAAAGCAGAAGAACAGCCCAAAGCAAGGCGCGGCAAAGcgctcaaaaaaaaagcagagcAGCcggacgacgacgatgacgacgagcCGGAGGCGGAGCCAGAGTCAACGCCACCCTCGCCAAAAAAgcaggccaacaacaatgcgcgTCCAGTGCGTCGCCAGGCGCAGGCCAAAGCCCAAAAAGCTAACGAGCGCTCGGCCAGTCCCAGTCCGCAGCGGAGTCAGCGACCGTCGCGGAAAACGAAGGAGGCGGCGGCCATCTACATGGGCATCATTGGgcacaagctgcagctggccgATGACGAGGAGGATGATCTCTCGCTGAGCAGCTTTCCGGACATACCCAATGTCAAGCAGATGGAGAAAATGGAAAAGGAGATGAAGAAAAATGCGACGGGCAAAACGAGCGAGGCGTCCGCCTCAAAAAAGTCAAAAAGTCAAAAAGAtgaagcaacagctgcagctgcagctgaatcTGCCGAGCCGCAGACGCAGTCAGCGCCTGAACCGACAGCAGCTGCGCCGCCAGCCAGACGCGGACGACCGCCCAAGCAGGCAAAAGGAGgggcagctggagcaggagcagcaacggGAAACGTCAAGCCACAGATTGAGGGCATGCTGGTAAAAAAGGGTGCGCTGGCGTTGGCCAAAGCCAAGTCCGAACagcaaaaaaaccaacaacaacaacagcagcagcagcagcaacaagagaaAGACGACTCCGACGCGGAGGAGGATTTTTTAATCAACGAGGAGCTAAACGAAACGAAGCGTAAGCTGGAAAAGAGTTTTAGCGACTCCGATGATGAGCCGCTGGCCATAAAAgtgccaacagcagcggctacagcagccgcagcagcagcagcagcaacaacaactgcagcagcagcagcagaaacaacaacagccaaagccagcagcagcagcaaagtggaaaatgcagcagcaacaacaacaacaacaacagctgctgcaacaacaattccaacaacaacagctgctgctgcaacatccacagcagcagcctcaacagcaacgacaacaattgtCAAGCCACAGCTGAGCGCTACGCccagtgccacgcccaacaACAGCCTGTCGAGCAGCACGCAGCTGACGATGTTGCCGCTGACCGCCAAGCCCATGCCGTACTCCATATCACCGCCCAGCTACGCATCCGCCGCAGCCACATTGAAGGCCATGGAAAAGAAGTCGCCGGTGCCCACGTCCAAGATACTTAATGTGCCCGCCACGTATGCGCTGCCAGGGGCCGGAGTTGGTGCTGGCGCCGGCGCTGTGGGCTTTGCCAAGACCTCGTCCTATTTGCCGCAAGCATCGCCGCACTATCACACGCCCTATGTCCGGCCGCCCACGTTTAGCGCCGtcgctgcagcggctgctgctgcagctgtgggCAACAAAacgccgcagcagcaggcgacgACAACAGCGGGCACAGGCACATCTCCGCTCAAATATCAGACGCCGCCCACCACCTATCCGCCGCCCATCGAAGCCTATCAGTGTCCCAAAATAAATCCCAATTTCCTGACGCCCAAATACGAGCGCAGCAGCGTCTTGCCGCGCgcaaacaacatcaacatgaacaacagcaacatcaacagcagcagcagcagcgttgcGGGCAACAGCAATGTGCTGGGCAACAACAGTTTTGCGGCGCCGACAGCGGCGCGTGGCACGCTCAACAGCCTGGCGACGCCCGTGGCAGCTGCTCCAAAACCTGCTGCAGTtagtcaaagtcaaagtcagaGTCTTAATCTCAGTCTGACAGCAACGCCCACAGCTGTGGCAtccacatcagcagcagcagcagccgccgcacagcaacagcagcaacaacagcagcaggtgTCGCCAGCGGCGCCAACCACGCCCACAGCAACGCCTGCAACTcaacccagcagcagcagcaacaataacaacaacagcagcagcaacaacaacaacaataataataataataataacaacaattcaGATCCGCTTAAGGATGAAATTGGCAGCATCTTGGCCCAGGCAACGCTCATGCCCAGCAAAGAGGAGTCGGGCAAGATCTTTGGCATAGCCAGCGTGAGTCTGGCGCAGAGTTCCGGCCCGGACAACACCAAGTGCACGCTGGGCAAGTGCGGCTCCATACACAAACCTGTGCTGGGTCCCGTGGTGCCCACCGAGGGCTACTTTGGCGATCAGCTGTCCAGCAAGGAGCGCCGCAAGGCCAAGGTGAATATGACGCACGAGCAGATACAGAAGTGGCTCATCGAGTGCAGCTCGAATCCGGACGAGATCCAGGACGATCTGGACGATGACTACGATGACAGCTTGCGTCCGCAGCAGGCGCAAACACCGCCAGGTCCCGCGCGCGACGACAAGGAGAGCACCAGCTTCAGCAGCTCCTCCAAGAACACGCGCGGCGAGCTGGGCAAAAGCGAGAGCGCCTGGTCAGCCAAGGGTCCATCGCTGAAGGCCACCCCGGTGCTGGTCAGCACGGcgacagcagccgcatcagcTGCCTGCAATCGAAAGGAGACGGAAACGGAGCCGGAAACGCTGGACTTTGACAAGTGCGTGACGCCCGTGAATTTGACGCAGAAAACGCAGCTggagccagctgctgctggcgagAAGAAGCTCAGCGAGAAGAAGCCCAAGAATGCGGCCAGCAATAGCGTcaaggcggcggcagcagcagcaacagctgctgcggGCAGCAAACGCAGCTCTGCGGCGACTCCAACGCCCAGCGCAACtccaacgccgccgccgccgccgagcAAACAGAAGGCGGCCAGCAAGAagcaggcagctgcagctgcggctgcctcCAAACTGTCCACGCCGCCGCCcactaacagcagcagcagcaacaacacgcCAGCAACAGGGCCAACAACGCCGGCTAAGCGCACGCCCGTCTATCAGAGCCAGACAAGGGACAAGGGCAAGGCCCAAGCGCAGGCGGACAACAAGCAGCAGTCGGGCAAAGCGGCCGAAAAGACGTCCGTTTATGCCTTTGGTAAGGATGAGGaggcagctgcaactgttgcggGCAAAGCGACAAATCGGCGTCGCAACGCGGACAACGATGCAGCGGCGGTTCCGCCGCCTGCGCTCAGCGAGCGTTCTCCCACAAAGAAACGCgccgcggcagcagcggcagcgacggcggtTCAACTGACGCTCAGTCCGACGGACAAGCTGGAGAAGCccaaagcagcagccgcagcagcgcgcaaaaagcaacagcagcaacaacaacaggcaacagcagcagctgcagcagcggcagcagcaacagctgccagcgCTGGCGGAGATTCGGACGCAGAGGGCGCCACCTTCTATATACCGCTGCTGCAAGGAGCAAGTGGAGGCGGCGAGGGTGGCATTCAAGGCGTGGCCGTCAAGCTGGGACGCGAGGGACCCGATGGGCCCAACCAGAAGGTGGTCATGCAGGCGACCCTCGTCACGAAGGCGCAAATGGACACCAACTCCTCGAAGCCGCTGCCGGACAACGAGCTGGTCAAAACGCTGCTGAATGCGGCGAATGATTCAGCTGCTTCTGCAACCGCCGGGAGCACCCTCAAAGCCAGCACctcagcagcggcggcggcggcagcggcggcggcggcagcggcggcggcgacaacGGCGGCAGCTGGTGGCCTGGTGCGGGTAAATTCCAATTCGTCGCTCTTCTCGGGCTCAGGCAAGTCGCGcacggctgctgcagcagcagtggctgCCAGCAACGCGCTGGCCAAGAAGTACAAAGACGATACGCCCATTAAGATGGCCAATAATACGGCATTCCCGCGACACGATGATCCCACGCAAATGGTCGAGGCGCCCATATTCAAGCCCACCGAAAAGGAGTTTGCCGATCCCATCGAGTTCATTGAGCGGATCACGCCCATTGCAGCCAGATTTGGCATCTGCAAGATCATACCGCCGGCCAGCTTCAAACCCGAGTGTCGCATCTCGGACGAGATGCGCTTCACGGCGTACAACCAGTACGTGCACAAGATGCTGCATCGCTGGGGACCCAGTGCCAAGGAGCTGAGCGCCATTAAAAAGTATTTGGCCACACAGAGCATTGTGATGAATCATGCACCATGGATTGGCGGCATGGAGGTGGATCTGCCGCGTCTGTATCACACGGTGCAGGAGCTTGGCGGCCTCAAAGAGGTCATCGAGAAGAAGAAGTGGGCGCGTGTGGCCGAAGAGATGTGCATACCGAAGCTGGCACAGGATCGGGTGACCAAACTGGATGACATCTACTGCAAGTATCTGTTGCCCTACGACACTCTCTCCCCGGCGGAAAGACAGAAGCTCTTTGACGAGGTCGAAGCGGATTGGGCCAAGCGTGAGGCACGTGCACGTCGCAATGCGGATCGTTTTGTGAATAGCACCGAGAGCGTTTCGAACGAGGAGGACGATGTCTCGACGGACGAGGATGAGGAGTCCGAGGAGGAGATCGACGGCGTTTCCATGGAGTGCATTGTCAAGGGTCGCAGCATGGCGCTCAGCCAATTCTATCGCATAGCACGCAACACAATGGCCCTTTGGTTCAAGAGCACCGATCCCACGGTCAACGAAGTCGAGGCGGAATTCTGGCGTCATGTTGCCGTGCGCGACAGTCATGTTTGCGTGCATTCCGGGTCCATTGATAGCTCCGGCTGGGGCTACGGATTTCCCAGTCCAGGGCCGAAGGGCAAGGGCTCGAATTATGCGCGACATCCCTGGAACCTCAAAGTGCTGACCAACAATGCGGGCTCTGTGCTGCGCTCTCTGGGACCTGTCATGGGCGTTACGGTGCCCACGCTCCATGTGGGCATGCTCTTCTCCGCCTGCTGTTGGTATCGTGATCCGCACGGCCTGTCCTGGATCGAGTATCTGCATACGGGCGCCTCCAAGCTGTGGTATGGCATACCCGACGACCAGAGCGCCAATTTCCGTTCGGCGTTGACCTCCCTGATACCGACGCACTGTCAGAACAAGACAATCTGGTTGCCCTGTGATACGGTAATGGTGCCTCCGCACATGCTGACCGATCGCGGCGTTTCCCTGTGCCGCATCGAGCAGAAGCCGGGCGAGTTTATTGTTGTCTTTCCGCGCGCCTATACCTCCAGCCTGGCCACCGGCTATGTGGTCTCGGAGAGCGTTTATTTCGCTACCATGTCGTGGCTGGATCTCGCCAAGGATGATTTCAGGGACATTCATGAGAGCTGCGAACCGGCCATGTTCTCTTTGGAGCAGCTGCTCTTCGCCTTGGGCTACGATCAGCGCGTCAATTCGGACACATTACAGCAGATGCTGCCCATGCTAAACGAGGTCTGCGAGAAGGAATCGGCGGCACGCGAGCAGCTCAGAGCCGCTGGCGTCACGTCCACCGAAAAGGTGCAGGCGGAGAAGGGTCAAAAGGcgaaaaagcagcagcagccgccgcacaAATCAATCGAGAGCGAATGTGATCTGTGCCGCGCAAATCTGTATATATCGATGGTGCGCACCGAGGAGGGCAACGTCTACTGCCTGCAGCATGCTCTAAAAAATCTCAACAATGGCAATATTCAGGCCAAGCAATGCAAACTGATCTATGCGTATAATGTGGACGACATACAGCAGCTGATACGCCAGCTCCAGGAGAAGATCCAGCACAAGGCGGCCGTCAAGAAAAAGTAG
Protein Sequence
MVVSKDNKRRRKETETPPTSTSVAAAVTVAVESSPEMPKRTKVQAQRKFAQGQSAPSAAGPFSAASVAAAAAAASGPSTSTESHQPPIEILPNKCPKPQDFLTFLCFRGTSALPAHLDYLNQGKSKPNELPPSSDASNNNNNNKKKNNSSSSSKKKRGRPAKTATAKAAVEQLQQQVQQVPQLAANDKTASDKIEAVTPLPAAPLLLAGAVRKRAEVIAEGNRRGARRPETLKRRSNRANNREKDDEPEHQKRDKADAAEHGKEDEAQGEDEEDDDEFYSAHDASSRNGGADDTLSKSETTNSNAKRGRSQAASRKAAASHSPAATDNSAGKDKDKEKGPVKRVRQRESPIFIPSPESSGRMTRQRAFFEPVKVPPKQEPQDNEHQEKEKELQEQKKPAAATESKKQQPEISKEKTNSSIYAKDAAKQQLENGGTATAAAAAEQQKGLNVFDFSSDDEQPLAKAIKLKKGGKKGGAAGAGAAAAAATTSARGRKSAGGSAKKQQQREEEKAAMPSATASKAEEQPKARRGKALKKKAEQPDDDDDDEPEAEPESTPPSPKKQANNNARPVRRQAQAKAQKANERSASPSPQRSQRPSRKTKEAAAIYMGIIGHKLQLADDEEDDLSLSSFPDIPNVKQMEKMEKEMKKNATGKTSEASASKKSKSQKDEATAAAAAESAEPQTQSAPEPTAAAPPARRGRPPKQAKGGAAGAGAATGNVKPQIEGMLVKKGALALAKAKSEQQKNQQQQQQQQQQQEKDDSDAEEDFLINEELNETKRKLEKSFSDSDDEPLAIKVPTAAATAAAAAAAATTTAAAAAETTTAKASSSSKVENAAATTTTTTAAATTIPTTTAAAATSTAAASTATTTIVKPQLSATPSATPNNSLSSSTQLTMLPLTAKPMPYSISPPSYASAAATLKAMEKKSPVPTSKILNVPATYALPGAGVGAGAGAVGFAKTSSYLPQASPHYHTPYVRPPTFSAVAAAAAAAAVGNKTPQQQATTTAGTGTSPLKYQTPPTTYPPPIEAYQCPKINPNFLTPKYERSSVLPRANNINMNNSNINSSSSSVAGNSNVLGNNSFAAPTAARGTLNSLATPVAAAPKPAAVSQSQSQSLNLSLTATPTAVASTSAAAAAAAQQQQQQQQQVSPAAPTTPTATPATQPSSSSNNNNNSSSNNNNNNNNNNNNNSDPLKDEIGSILAQATLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYFGDQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDYDDSLRPQQAQTPPGPARDDKESTSFSSSSKNTRGELGKSESAWSAKGPSLKATPVLVSTATAAASAACNRKETETEPETLDFDKCVTPVNLTQKTQLEPAAAGEKKLSEKKPKNAASNSVKAAAAAATAAAGSKRSSAATPTPSATPTPPPPPSKQKAASKKQAAAAAAASKLSTPPPTNSSSSNNTPATGPTTPAKRTPVYQSQTRDKGKAQAQADNKQQSGKAAEKTSVYAFGKDEEAAATVAGKATNRRRNADNDAAAVPPPALSERSPTKKRAAAAAAATAVQLTLSPTDKLEKPKAAAAAARKKQQQQQQQATAAAAAAAAATAASAGGDSDAEGATFYIPLLQGASGGGEGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNSSKPLPDNELVKTLLNAANDSAASATAGSTLKASTSAAAAAAAAAAAAAAATTAAAGGLVRVNSNSSLFSGSGKSRTAAAAAVAASNALAKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFKPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHAPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNSTESVSNEEDDVSTDEDEESEEEIDGVSMECIVKGRSMALSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSDTLQQMLPMLNEVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPHKSIESECDLCRANLYISMVRTEEGNVYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQEKIQHKAAVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
80% Identity
-