Basic Information

Gene Symbol
Trerf1
Assembly
GCA_000005135.1
Location
CH954181.1:16302522-16311814[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.3e-10 2.6e-07 30.6 0.1 2 45 1732 1775 1731 1776 0.94

Sequence Information

Coding Sequence
ATGTGCAGCGCATCCGTGGGCACCGAAGGATCCGTCACTCTGCAACTGCGTGATGCGAACGCATTGGAGGCAGCAGCCACAaagacagcaacagcagcagcagcagcagcagcagcggcagccacaTCGACGACGTCACCAAATGGCGCTGCAAGTGCGTCAGCGTCGACGCTAGAGAATGCGCTGACCATCGGCTATCCGGATCCGGAAATGTTGGCAGATGTCTTGGGCACCATTCAGACAGCCTCACTCAAGAACAACAACGCAATCACAGCAGCAACTTCAAGCAATAGCTCGACCAAGTCGACGAGCAGCAATCATCTGACAAATCCCAACAAGATAACCATAACCAGGCGGAGTGTGCAGTCGGTCAGCACCTCGACGAATAGCGGTAGCATTAgtagctgcagcagcagcagcagcagcagcagcagtagcagcaacagtggcagtggcaaaacCAACACCAGCTACATAAAGAACTGCTtgatccgcagcagcagctgcagcaacacgGTCACCAATGTCACCACATTGGCGCAGATTatgagcaacagcagcaccagcagcgcGGCCAGTTTACTCAAtcagcacaacaacaacagcaactgcagcaacagcagcaacttcagTACCGCCTCCTCGGtgggcagcagcatcagcgttggcagcaacagcagcagcagcaactgcagcaacggcagcaacagcaacagcaacgacagcaacagcagcagcggcggcggccacAGATTGAGTTTCAAGGGCACCGGACGGCATGTACCCACGAGCGGATTAGGTTCATCGGCGGCAGCAACGAACACGAGCGGTGCCGCCAGCGGCATTGGCGGCATCATAAGCGTCGAGGCGCCCCGCAAAAATCGACCCAAATTATCCTCACCAACGCGTCACGGACCGCAGCAGTGTCAGATTTGTTGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAGCGGAAATACATCTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAGTGTAAGGCGGATGGTTGCGGCAAATCCTACTGCGATGCCCGATCATTGAGGCGCCACTCGGAGAACCACCATGCCGGCGgagcagccacgcccaccaccagCCAATCGCTATCGCCCACCGCCAGTTCGAGCGGTACCAGCAATAGTAGTGGTGCCGGCGTGGCCACCAGCTCCCTGAGTCTCTCCCCGGCCACGGCCAGCGGAGATGCCAGCTCCCCGGACGGTGCCACCTGCATTCGAACCTACATTTCCACGGGCAGCTCGGTGGTGGACGCCGCCACCGGGATCGCCCTGTCGGAGGAACAGATCAAGGCGATGAATCTGCCGATCAAAACGGGCGTGACCTTGCTGTCGCCCACCACCTCGACCTCATCGAATGCCTCGTCCTCGGCCTCGTCGGCCAGCTCATCGCTTTCCTCgacgggatcgggatcgggatctaTGTCGGGTTCGGGCTCGGGCTCGGGTTCGGGATCGGTTTCCATGGCCCCGTCACCGTCAAGTGGCTCGATGATAGCCGCCAGCTCGCCCACCATCACGCTCAGCGATGGGATGAGTCTCGAGGGCGAGGGTCTCACGCGGGAACAGTTGGATCTCATCAGCAAGATCATGCAGCAAACGAAGCAGACGAGTGCCCAGGTCACCGTCTCCTCGCCCACCAGTGTCAGTTCCTACAAGATCAACACCAACTCGTCGCCATCGCAGAACAGACCGCGCACCTGGAACATGCAATTGCTAAATAGTGCACAAAATGTGACTGTCACAGTCGAGGACAACTCTGAGCTCGTTACCCCCTCCTCCAACTCGCCCGTGGAGGtcaaggaggaggagctgagCCCACAGCTGGTGGGCAACATGAATCCCCACCTGCTCAACATCGTGAAGCTCGACAAGCCCGTTGAGTGCAATCTCTGTCACCGTAAGTTCAAAAACATACCCGCCCTCAATGGGCACATGCGCCTGCATGGCGGCTACTACAAGAAGGATCCGGAAACCAAGCGCAGCGAGAAGAAGGACTCCAGTGGTCCGCCCCTGCAGACGGCCAGCATTGGAGTGCGCGCCCTCATCGAGGAGAAGATCATCAGCAAGCGCAAGGACATGACTAAGGGCTCCTTTGTGGTTCCGGCACCACCGCACAGCAgtggcaccaccaccaccctgCGTCGATCGATCAGCGACCTGGAGAGCTTCCTCAACCCGAAGACGAGCACCAGCAGTCACACCCAGACGATGACCACCACTACGGGCACCACCACAGCGGTTCTCCCGGCGGCCACCACCATCAAGAGCAGCAATGGCCTCAGTATCCAGCAGATTGGCCTGCCGCAGAGCATCGAGATCTTCAGCGGCGGTCAGAAGCAGGCAAAGACGCTCAACCTGGGCAGTGGCACCAACACGATCACGATAACCACCAACAATGTACCCACCACCACGACGATGAGTGCTCTAACTGCGCTGAAGGCGGGTGGCACCATCAGTGGCATCTCTACCGCTACCAACACGGATCCCAAGGACTCCACGCTCATAGAGCTCCTGAAACGCGGCACTCGCATTGCGGTCACTTCGAAAAAGAGCCAATCCCATGGGCACACAGGACCGAGTATAATGATGACCTCCAGCGGAGCGGCTACAAATGCAGTGGGTGCTATCACCGAGTTGACCACCATtggtggcggtggaggagTGCAGACAGTGGGCAGACAGATCATAACCAACAACAACCGCACCGTGATCATACCCTCCGATGTCCAGGTGGTGTCCACCAAGAGCAAGCTGACCAGCTTGAGCAGTCTGGTCAAGAGCAATATGACCAGTGGTGGCACCTGCTCCTCGGGAAATCTTTCGCTGGCCGATGGCACGCCTCTCTCCCTGACAATTGCGCCCAACCAGGAGGTCACCGGAGGTGGAGGCAACTCCAGCGGATCGGGCAGTGTGATCACGAGCGGGGGCGGTGGAGTCTACACGGTTACCTACACCAGTGATGGCACCGATCTCTTTGACGATGCCGAGGTCTACAACGTTTCGGACACCGAGATGCTGCTGCAGACGGTGGACTCCATGGAGCTGCTCAACGATGAGGAGATCAAGAGCGAACATTCCGAGGACTTTGCCCTGCTAAGCGAGGCCGGCGATAGCGCGCACACCCAACTGGTGAAGCTGGAGCCGGAAAGTGGGCAGGCCAACTCCGGCTCGGGAAGCGTATCCGGCGCCAACACCACGCCGTTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTGATCATGCAGAACAGTTCGCAGATCCAGGCGATAGCCAGCATgcgtggaggtggtggtggtgtccTGGCCTCGCCGCTCCACTCGCCACTGGCCTATCCCACTCCGCCATCGAGCCACGAGAATATGGCCCAGAGTTCGCCGTTCATCGAGGATGCAGCTGCCCAGTTTGTGGATGCCAGTAACACCTTCTTCGGCGACAAGACGGACTTCTCGCACATCTACTTCAAAACGGATGAGGGGGAGGCCACCATTGAGCAGCTAAATGAGCACGACAACGAGAAGATCCTGAAGCTGAAGTCAGTGCTGGAGGAGAGCAGCTTCGATCCCTCGATCAAAGTGGAGGACCTGCTGAATGGCACAGATGATGACACGGAGTGCGATCTGCGGGAGTTTGCCGAGACTAATCTGTCGTTTTTGGACGAGGATCAGGAGTTCCTCAACGACTCGAGGAATGCCACCTCTCCGCTCTCCGAATCCTTCTTCACCAGCGGCATTGGCTCCGCGGAGGATGTGAAGCAGGTGTTGCGAGAAGTCCTGCCCGATGAGAATATGCAACTGCAGTTGACCAGTGAGCAGCAGGGCGAGAACATCATCGATCTCTACTATCTGCCTGGCCTGGGCTTGCAGTCCCAGATGATGCCCAATTCGGAGGACCCGCTGCTCTCCTCCTCACCCCGTGAGTTTGGCCAGCAAAGACAGCAGTTGGCCATGCAGACCTCCAGCATGCAACAGCCCATGGAGCAGTCGCTTCTGGACAACAGCAACCTctaccagcagcaggagcagcagcaacacgagcaacagcagcagcaacacacacagcaggagcagccacCGCAACAggaacaacagcagcagcaacagcagcaacagcagcagcaacaacatcaacagtTACTGCTGCCCCAGCAGCCACTCAATCAAACGGAATCCCTGCCGGCAGTGGGTCAGCAGCAGGGTGACTTCATGCTGCCCCTGGTGGGTGGTCATGGATTCAGCCAAGTTACCAGCCAAACACAATACATTGACAACAGCCAGGGCGGCATGGGGATGCAGCCGCTCAACAGCCTGCTGCAACCACTGCTCTATGGTGGGGTAACCACATCCAATGGCAATGCCTCAGCCGGGGGCAACGAATCTCTGCTCACCGCCGATTGCCAAATGAATGCCAATCAAGGCCAGATCGATACGGGCCTGATGTTCGCCTGTGGCAACACGACAACCATGGCCCACAAATCCCTGGCGGCACTCGTGCCTAATCCGCCGAGCGTGGCTAATCTGCAGCCCTTGTCCAACCAAACCAATTCCATTCTGAAGCGCCGCCTGCGCTCCAATGCGCCCCAGGAGACGCACAAGTTCTCCAAGTTCCACACTCTGTCCCCGCATCGTTCCAAGCTGCGCAAGCCATCACGGACCCACTATACGCCCGCACCCATCCTGAATCCGGATCGCAAGGGCACTGGGCTGTACTGCAATGTGCGCAAGCAAATGGGTCAGGGTCTGTTCGACGCCTTCGACGACGACTTCGGCGACTCGGTGGGCTTGGTGGACTTCTCGGATGAGTCCAAGGTGAACTTGGGCTCCACCTACCAGGCGCAGATACCCGGCTGTCGGCCGCTGGAGGAGGCTGCGCGTGACTCTCCGGGCGCCGAGATGATGTGGAACCCGGAGGTGCAGGAGGACGAAAAGATCCTGATGCGCTACATTGATCTCAGCAAGTCGTCGGCCGTGCCCATGGGCAGTCATTCCGAGGAGGTGGCGCTCCAAACGCTGCTTCGGGCCAAAGGAAACTCGGCGGCGGCTGTGCTCAGCCTACTCCAAACGCAGTCCGGCGCCTTCCAGATGAAGTGGACCGCCTACGAGCTGGAGCAGTTCTTGCGGGGATTGGAGAAGCATGGCAAGGACTTTGGCAAGATCGCCAGTGAGCTGCAGACAAAATCCTCCGGCGAATGTGTGCAGATGTACTACTTTTGGAAGAAGCTGTGCGTGGACTACAAGGTGACGCACTTGAAGATGGAGCCCGTGGTGGTGATTGCACCCGCGGTGGAGAAGCCCTATGTCTGCGAGATCGCCGACTGTTCCGCGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTATGGTCGCAATGCCAgtagcaacaccagcaacaacagcagcagcagcagcaacaccggcaccagcagcagcatgcaACATGCCGCTGCAAGCactggcagcagcggcggcaacaacagcagcagcagcagcagctacgcCTGCGCAACactgagcagcagcaacagcagcagcaacattggcAGCAGCaatgccgctgcagctgcagcagcgcaCAGCAGCAACCTGGCTCAAAACGGCAGCAACTGCAGTGGGCATGCGAATGCAACAATAGCAGCATCTGCGCTTTCGACCACGCCCAAACTGGAGGCGGGCATGGGCAATACCACTAACATACCCATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAGAGTCGCAGTGCGCACATGAAGACGCACCGCGTCCAGGAGCCGGATCAGAAGCACCAGCTGAACCACCAGGCGGGAGCTGGCCTGACCACCGTCGCCTCATCAACCATAACCGCACCATCGTAG
Protein Sequence
MCSASVGTEGSVTLQLRDANALEAAATKTATAAAAAAAAAATSTTSPNGAASASASTLENALTIGYPDPEMLADVLGTIQTASLKNNNAITAATSSNSSTKSTSSNHLTNPNKITITRRSVQSVSTSTNSGSISSCSSSSSSSSSSSNSGSGKTNTSYIKNCLIRSSSCSNTVTNVTTLAQIMSNSSTSSAASLLNQHNNNSNCSNSSNFSTASSVGSSISVGSNSSSSNCSNGSNSNSNDSNSSSGGGHRLSFKGTGRHVPTSGLGSSAAATNTSGAASGIGGIISVEAPRKNRPKLSSPTRHGPQQCQICCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHAGGAATPTTSQSLSPTASSSGTSNSSGAGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSEEQIKAMNLPIKTGVTLLSPTTSTSSNASSSASSASSSLSSTGSGSGSMSGSGSGSGSGSVSMAPSPSSGSMIAASSPTITLSDGMSLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTNSSPSQNRPRTWNMQLLNSAQNVTVTVEDNSELVTPSSNSPVEVKEEELSPQLVGNMNPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYYKKDPETKRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDMTKGSFVVPAPPHSSGTTTTLRRSISDLESFLNPKTSTSSHTQTMTTTTGTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQAKTLNLGSGTNTITITTNNVPTTTTMSALTALKAGGTISGISTATNTDPKDSTLIELLKRGTRIAVTSKKSQSHGHTGPSIMMTSSGAATNAVGAITELTTIGGGGGVQTVGRQIITNNNRTVIIPSDVQVVSTKSKLTSLSSLVKSNMTSGGTCSSGNLSLADGTPLSLTIAPNQEVTGGGGNSSGSGSVITSGGGGVYTVTYTSDGTDLFDDAEVYNVSDTEMLLQTVDSMELLNDEEIKSEHSEDFALLSEAGDSAHTQLVKLEPESGQANSGSGSVSGANTTPLPTFQQFHSKELIMQNSSQIQAIASMRGGGGGVLASPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDEGEATIEQLNEHDNEKILKLKSVLEESSFDPSIKVEDLLNGTDDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLTSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQQLAMQTSSMQQPMEQSLLDNSNLYQQQEQQQHEQQQQQHTQQEQPPQQEQQQQQQQQQQQQQHQQLLLPQQPLNQTESLPAVGQQQGDFMLPLVGGHGFSQVTSQTQYIDNSQGGMGMQPLNSLLQPLLYGGVTTSNGNASAGGNESLLTADCQMNANQGQIDTGLMFACGNTTTMAHKSLAALVPNPPSVANLQPLSNQTNSILKRRLRSNAPQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQMGQGLFDAFDDDFGDSVGLVDFSDESKVNLGSTYQAQIPGCRPLEEAARDSPGAEMMWNPEVQEDEKILMRYIDLSKSSAVPMGSHSEEVALQTLLRAKGNSAAAVLSLLQTQSGAFQMKWTAYELEQFLRGLEKHGKDFGKIASELQTKSSGECVQMYYFWKKLCVDYKVTHLKMEPVVVIAPAVEKPYVCEIADCSASFSSKAALHGHVRIHAYGRNASSNTSNNSSSSSNTGTSSSMQHAAASTGSSGGNNSSSSSSYACATLSSSNSSSNIGSSNAAAAAAAHSSNLAQNGSNCSGHANATIAASALSTTPKLEAGMGNTTNIPIAKEGEFPCKVCGKVFNKVKSRSAHMKTHRVQEPDQKHQLNHQAGAGLTTVASSTITAPS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2