Dere003554.2
Basic Information
- Insect
- Drosophila erecta
- Gene Symbol
- -
- Assembly
- GCA_000005135.1
- Location
- CH954178.1:3168984-3170611[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2e-16 4.5e-13 48.7 0.0 2 45 349 392 348 392 0.95 2 3 0.057 80 3.1 0.0 28 37 422 431 417 436 0.89 3 3 1.4e-19 1.9e-16 59.5 0.0 2 45 458 501 457 501 0.94
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAGTGGATGGGCCACTCGTCCACGATTATGGACATTCAGCGCTCGCTGCGTAATGATAATCAGCACTGCGAGGTGGTCCTGGCCTCCAGGGACGGCGTTCGAGTGCGCGCCCATCTCTTCGTGCTTAGCACCTGCAGCGAACTGATGCGCAACCTCCTGGTCGACGTTCCGCGCGGGCAGGAGGCAACCATAATGCTGCCCGACATCCGTGGAGATTTGCTGGAGTGCATGCTGTCCTTCATTTACATGGGAGAGACGAGCCTGCCTTCCGCGTCGCTCTCCGAGTTCCTGGAGGCCATTAACCTGCTGGGCATCAAATCTGCCATCAGCTTCGAGTGCAATCCATCGGCTAGTACACCTAGCGTCGATGTAGAAAACAATTCGTTAGCCGTGGAGTCGGCCAAGTCCATCACTGGCCTCCAGATCGCAGAGGCAGAGCTGttggacgacgaggaggagccACAACCAACGGTTTCTGTGCCAGCCACTGTTCTCGCGGGGTCCCAACATCAGCCCAGCCACTCCAGCCGATCTTTGGAGTATCTGGATGTCTACGAGCCGCCGAAGATCACCTACTCCATTGAACACATGGACGGCAATTCCAGCGGCAATCAGTTTATATTAACCGAGAACACGGGCACTTTTACTATAACGCAGTCGGCTTCCAGCTTATCCAAAATTGAGGCTGATGAAGCGGCCACCAGTGGCGCTGAAGTAGACCTCGGAGACGATGACGTGGATGCAGACATTGCTGAGGATTCTGAGGAGCACGAGTCACAAATGATTGAGGAAGAGTTCGCACAAACCGATCCTCTTATGGAACTGGAAACGGGTACTGAAAtggacgacgatgacgacgtgCACGACCAGCTTGTGGACGAGGAAATAGACGTAAAGCCCCGCAAGATGGGCGTGGGAAAGACGCGAATCCGTCGGCCCATAAGTGCGAAGCCTGTCAAACGATTGCCCGATTGTAAACCAACGCGACTACAGCAGTTCGCGGCGCTCAAACGGGATGTAAAAGACGATATAAACGATGCTTTGGATCTGGCGGCTGACGCGGTTATCATCGAGGGCTTAAGCCTACAAAAGGCCGCCGACCGGTTTGACATCTCCAAGACAGTCCTGTGGCGGCGCGTGCGCACTAATCCCGCCTACATGCGAAACAACCGGGAACGACCATCGCTGCTAGAGGCCTACGAGCGGCTGAAGAATGGAGACTCTTTGAAGAGTATCAGCACGGAGTTGCAAATCCCCATGTCCACGTTGCACCGACACAAGGTTCGTCTGTCCGCCCAGGGACGCCTGCCCAATTTCGTGTCCTGCCGAAAGCGGGACACCACGCCCAAGGATGAGCTGCGCGACAAATTAGCCAAGGCGGTGCATGCCTGCCTACATGAAGGCATGTCCCAAAATCACGCGGCCAACCTCTTCGAGATACCCAAGAGCACGCTCTGGAGACACCTGCAGCGACGCACGACGAGCCAGAACAGAAAGGTCAAGAAGGAATTGAAAGTCGAGTACGGAGAAGATATGCTAAACTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDNQHCEVVLASRDGVRVRAHLFVLSTCSELMRNLLVDVPRGQEATIMLPDIRGDLLECMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSASTPSVDVENNSLAVESAKSITGLQIAEAELLDDEEEPQPTVSVPATVLAGSQHQPSHSSRSLEYLDVYEPPKITYSIEHMDGNSSGNQFILTENTGTFTITQSASSLSKIEADEAATSGAEVDLGDDDVDADIAEDSEEHESQMIEEEFAQTDPLMELETGTEMDDDDDVHDQLVDEEIDVKPRKMGVGKTRIRRPISAKPVKRLPDCKPTRLQQFAALKRDVKDDINDALDLAADAVIIEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLLEAYERLKNGDSLKSISTELQIPMSTLHRHKVRLSAQGRLPNFVSCRKRDTTPKDELRDKLAKAVHACLHEGMSQNHAANLFEIPKSTLWRHLQRRTTSQNRKVKKELKVEYGEDMLN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605685;
- 90% Identity
- iTF_00504790;
- 80% Identity
- iTF_00504790;