Basic Information

Insect: Drosophila equinoxialis
Gene Symbol: salm
Assembly: GCA_018150345.1
Location: JAECWI010000442.1:3016968-3024238[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2e-06 0.00016 22.0 1.7 1 23 328 350 328 350 0.98

2 8 2.8e-05 0.0023 18.4 3.5 1 23 356 378 356 378 0.98

3 8 2 1.6e+02 3.2 2.5 5 23 607 625 604 625 0.84

4 8 2.9e-08 2.3e-06 27.8 0.2 1 23 631 653 631 653 0.98

5 8 0.00088 0.071 13.7 0.9 1 23 663 685 663 685 0.98

6 8 0.023 1.8 9.3 0.1 2 23 872 894 872 894 0.96

7 8 9.6e-06 0.00076 19.9 5.0 1 23 1043 1065 1043 1065 0.96

8 8 7.6e-08 6.1e-06 26.5 0.7 1 23 1071 1093 1071 1093 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2e-06	0.00016	22.0	1.7	1	23	328	350	328	350	0.98
2	8	2.8e-05	0.0023	18.4	3.5	1	23	356	378	356	378	0.98
3	8	2	1.6e+02	3.2	2.5	5	23	607	625	604	625	0.84
4	8	2.9e-08	2.3e-06	27.8	0.2	1	23	631	653	631	653	0.98
5	8	0.00088	0.071	13.7	0.9	1	23	663	685	663	685	0.98
6	8	0.023	1.8	9.3	0.1	2	23	872	894	872	894	0.96
7	8	9.6e-06	0.00076	19.9	5.0	1	23	1043	1065	1043	1065	0.96
8	8	7.6e-08	6.1e-06	26.5	0.7	1	23	1071	1093	1071	1093	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAATCGCATTAATTATCGTGGCCCAAAGAGTGGAGGTGGCTCGGGCACGGGCTCTGGCTCTGTCTCTGCCTCAGGTGGTGGTGGTGGTGCCGACGGCGATAGCCTCTTGGCCAAGGAGCTGGATGCAGATAGTAATAATAATGCAAGTGTCCAGCAGTCAACAACGCCAGATGATGATGAGCTGGAAATGGATTCGGCAGAGATGGCGGAGGCTTCCGCCTCCGCATCAGAGGAGCCCATGGACAACAGTAATGAGGCCTTGGATCTGTCGGTGATTTCGGGAAATCGCTTGGCATCGAGCGGGCATGTGGCCTTGGAAGCTTTACAACATACCAAAGTGGCAGTGGCTCAATTTGCGGCCACAACTCATGCCAACGATCTGGCCATGGTCCAGTCTACTATATTCAATGTGCAGAGGCAGCATCTGATGCAGCTGCAGCTCATCCAGCATCTACAGAGTCAATTGAAACGAGCCGGAGGCATCCTTTCGCAGCAGCATGTTGAGCGAGATGAGGAAGAAGACACACGGAATGAAGAGCAAGAGGATAACGAACAGGAGGAGAATCACCAGCCAGAGGAAACTCCCAAAATCAACGGCTTGGCATTAGACGAGAAAGATAATACGGAGAGGTTAATTGATAAAGATGGCGAGGAGAGTTCAAAGACTGATAAGGCAGATGTAGATGGAGGAGTAATAGGAAAAGGAACAGGTACAGGCGAGCAGGACAACAGCCAAGTGATTGCCCCTCTAATGTGCGACATTAGTTCTAGTCTAGCGTCGAGTATAATAACTAATCATGATCCTCCCCCGGCACCAAATGAACCCAATTGCCTGGAAATGTTGCAACGTCGCACCGAAGAGGTTTTGGATTCTGCTTCGCAAAGTCTACATGCTGCCCAAATGCAAGAGGAGTACTCAGAATATGCCTCGAAAGAGGCTCAGAGCCGAGGCGAGATATTCAAACATCGTTGCAAATATTGCGGAAAAATCTTTGGCAGCTACTCAGCCCTGCAGATCCACTTGCGATCACACACAGGAGAGCGTCCCTTTCATTGCAACGTTTGTGGCAGTAAATTCACCACCAAGGGCAATCTAAAGGTTCATTATCAGCGGCATACTCAGATTTTTCCACCCATGCTTATGCCGCCAGTAGTGGTTAATGGAGTAGGTCCAGGAGGCACATCACAGGGATTGCCCCCACCGCCTCCTCCATCTGTGGAACACCTAAGTATGCGTCTGCCCTTTGTTCCACCTATGCCTCCTCCCGACAAGGAAAAAGAAAAGGATAAGATCGAGTCAGAGAAAGAGCAAGAAATGGAAGAAATGCACGGAATTGAGGAGCCAATGCAGCAGGCTGAGGATTTGAGTAAACCATTTCGAGAGAAAGAAAAATCCATTTCCCCCGTTGAGCTTGTAGTGAAGTCGCCCAAATGCCATACAAAAAAGGCGGAAAGTGCTGAAGAAAAGACAGAATTGATACCCAAGTCACCATCTCTTAGCCGACGAAATGGCAGTAGCCTTCGCAAACGGCACTCCACTCCAAATACTCCGCCCGGAGGTGGCGATCTTCACCCATCTCTTCAAATTGGCGATTTGGATCTTCATATGGCCGCCGCTGCAAAGATAGTGCGACGATCTAGCCGTGAGGCGCCAGCTGAGTACTCTATAGCCCAAATGGAACGCATTATTGACAAATCCTGGGAGGATCTAATTGAGATTGATAAAACCTCAGAGACCTCTAAACTGCAACAGTTGGTGGACAACATTGAGAATAAGTTAACCGATCCCAATCAGTGCATTTTTTGCCAGAAGGTTATGTCCTGCCGTAGTTCCCTGCAAATGCATATCCGCACCCACACAGGCGAAAGACCATTCCGTTGCAAAATCTGCGGACGAGCTTTTGCCACCAAGGGTAATCTAAAAGCTCATATGAGCATTCACAAGATCAAACCACCAATGAGAAGTCAATTCAAGTGCCCCGTATGCCATCAAAAGTTTTCAAATGGCATCATATTGCAACAACACATAAGAATCCATACTTTAGATGATGGTGGGATAGCAGGAGGAGCAGGACTTGTTCCTGGACAAAACGATATGTCAGCTTTGGCAATGGAAGATCAAAATTCCCAAAAGTCATTGGGAACTTCAGATACTTTGGACTTCTCAACCACCATTTCGGATCATTCGGGGCAGCGATCAGAATCATCGCAAGGAGGTGATTTTGATGAATTTATGACCATGGACAGTACGGACGATTCGCGAGATAATTCAAGCGTTGCCACTGCCACCCCTCTGCCTCTCGATAAAGAAAAAGAGAGACGCGGTGAGCCTACCGATGAGCAGTCTAATTCCGATCTGGTCACTAATGAAATGCCCGCCATGGATCTATCTTCACCACGTCTGTTTGGTGTGGCTAACGGAAGTGGAGGAACCTCAGCTGGTGCTGGAACAGGAGGAGGTGGTGGAGCTATGCTTGGCCTGCCCATGCCACCAAATCTTCTGCTCATGGCCGCTGCTCGCGAGGAAATGCATGCCAAATTCCCGTTGCTGCCATTCGGCCCTCTTGGATTTATGGGTCTGCATCCGCCTCCAAATGTGTGCAATTTATGCTTCAAAATGTTGCCCAATTTGGCAGCATTGGAGAATCATCTGCAGAGTGAACATGCCAAAGAAATTTCATCAGGAATGGGAACAGTAAACGGAACGGGAACAAATCGTTCAGTCGGTAACGAATCATCTGGATCACCCTATCAGGGGGCCAAGCTTACTCTCAATCCAAATCTGTTTGCCAAAAAGCCGCTTCCAACTCCAAATAACGAGAAATTGTCAGAATCGGCTAAGTTGCGAGAGGATACTCCCACACCCACCCCAGTTAAGGAGGAGCTCGAACAGGATCCAATTCAAAGCGATGAAGGTGGTTGTGATGGAGGAGGAGCTGGCTCCGGATCAGGATCTAGCTACAATCAGGAAGCAGCTGATGCCGAACAATCCTTAATGAAAATGCAATTGCATGCCCATCGCTTTCCAGCAAGTCCCTTAGATTTTCAGCAGGCCCTCATGTCTGCTGGTCCACCCACTTCTAGCCTCGATCCTCCTGTGAATAATAAGCACTTTTGTCATGTTTGTCGGCGTAACTTTAGTTCTAGTTCAGCTCTGCAGATTCACATGAGGACCCACACCGGTGATAAGCCCTTTCAATGCAATGTCTGCCAAAAAGCATTCACAACCAAGGGAAATCTTAAGGTACATATGGGCACTCACATGTGGACGAATCCCACCTCAAGGCGTGGTCGACGCATGTCCTTGGAGTTGCCTATGCGTGGAGGCCCTGGCGGACCTTGTGGGCCCGGTAATGCAGCACAGGCGGTTGAACAAGAGTTTATGCAGCGACGCCCTGAGATTTTCTTTCCCTACCTGCCGCCTTTTTTTAATGGACTGCCTCCAAAGCCTGGTGAACTAAGCCCAGGAGCCTTTGCCAATATACCGCCACCTCATTTCCCAAATGGTTCTAAATACCCCTATCCACCTGGTCTGCTGGCTTTTCCTGGCTTCCTAGGAGCAGCTGGCGGTCAGCAACCATATAATTTGGAGCGACGCAGCAGCAGCAATCGCATCAAATCGGAGAATAATCAAAATGATAATACAGAACGGGATAGCAGCAATGTGGATGATGAAAATCTGATCAACCGGCAAGAAGATGTTGAAGAATCAGAGTCGCACGACGAAGTAGTTGGTGAGAAGTAG
Protein Sequence: MCSIFRNRINYRGPKSGGGSGTGSGSVSASGGGGGADGDSLLAKELDADSNNNASVQQSTTPDDDELEMDSAEMAEASASASEEPMDNSNEALDLSVISGNRLASSGHVALEALQHTKVAVAQFAATTHANDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGILSQQHVERDEEEDTRNEEQEDNEQEENHQPEETPKINGLALDEKDNTERLIDKDGEESSKTDKADVDGGVIGKGTGTGEQDNSQVIAPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPVVVNGVGPGGTSQGLPPPPPPSVEHLSMRLPFVPPMPPPDKEKEKDKIESEKEQEMEEMHGIEEPMQQAEDLSKPFREKEKSISPVELVVKSPKCHTKKAESAEEKTELIPKSPSLSRRNGSSLRKRHSTPNTPPGGGDLHPSLQIGDLDLHMAAAAKIVRRSSREAPAEYSIAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTLDDGGIAGGAGLVPGQNDMSALAMEDQNSQKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSVATATPLPLDKEKERRGEPTDEQSNSDLVTNEMPAMDLSSPRLFGVANGSGGTSAGAGTGGGGGAMLGLPMPPNLLLMAAAREEMHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPNLAALENHLQSEHAKEISSGMGTVNGTGTNRSVGNESSGSPYQGAKLTLNPNLFAKKPLPTPNNEKLSESAKLREDTPTPTPVKEELEQDPIQSDEGGCDGGGAGSGSGSSYNQEAADAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRGGPGGPCGPGNAAQAVEQEFMQRRPEIFFPYLPPFFNGLPPKPGELSPGAFANIPPPHFPNGSKYPYPPGLLAFPGFLGAAGGQQPYNLERRSSSNRIKSENNQNDNTERDSSNVDDENLINRQEDVEESESHDEVVGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00523870;
90% Identity: iTF_00523870;
80% Identity: -