Deng003949.1
Basic Information
- Insect
- Drosophila engyochracea
- Gene Symbol
- ken1
- Assembly
- GCA_035042385.1
- Location
- JAWNLK010000099.1:13868762-13871152[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.067 4.2 7.9 5.9 3 23 253 273 251 273 0.96 2 12 0.00065 0.041 14.2 0.5 1 23 279 304 279 304 0.94 3 12 0.0019 0.12 12.8 1.2 1 23 311 336 311 336 0.93 4 12 0.00094 0.059 13.7 4.0 1 23 346 368 346 368 0.97 5 12 0.0019 0.12 12.8 2.2 1 23 375 397 375 397 0.97 6 12 0.0072 0.46 10.9 0.5 1 23 403 425 403 425 0.97 7 12 0.053 3.3 8.2 2.6 1 23 431 454 431 454 0.97 8 12 0.019 1.2 9.6 4.1 1 23 460 482 460 482 0.95 9 12 0.0093 0.59 10.6 2.3 2 23 489 510 488 510 0.96 10 12 0.00018 0.012 16.0 0.8 1 23 599 622 599 622 0.95 11 12 0.00037 0.024 15.0 0.8 1 23 628 650 628 650 0.95 12 12 9.9e-06 0.00063 20.0 2.3 1 23 656 678 656 678 0.98
Sequence Information
- Coding Sequence
- atgaatgaggGGAGTGAATACTCCATTCACTCAATATGCCGAATCTGCTTAAATCACCTTCGAAATGATCCGGCGTACGACCTGTTTCTCGTTCCGGGTCTGGCCaaaaaactgtgtgtgtgtacttcaCTCTCAGTGGAACAGCACGATGGCTTCCCGAAAAACCTTTGCACCAATTGCTACACCAAGCTGAACGACTTGCACGGATTCCAAAAACTGTGCGTGGACTCTGTACAAAAGTTTCAGGAAATGGTGGCTAGCAATTATTTTACACCTGTTATTGCCGATATTAATCAAATTGACAATGTCGACATACTGCACGTTCCAGCGCACGATGGGGATATGGAAGAGGATCGCATCAACTTTGATCCGCTGCTAAATACGAAAATTGAGATAATTGAGAATGAAGAGGAGGTTTTCAAAATGCTGGAAGATGTCGACAAAGAAGCGGAGGAAGTAGAAAAAGAGAAGGAGTCATCTAGTGATACTGAAcacgataatgatgatgatgttgactTTGAAGCGAATAGCAGTGAATCTGACGACGCTATGCCCCTGTCGCGTTTACGAAGCACTACCCGAGCATCAAAGACAAAGGCTAAGAAGAGCACTCAGGATGATTTTGACGATGACTCTTCCAGCTCAGATTCggatgacgatgacaatgatgatgatgatgacgacgataaGCCCAGAACGAAACCAAAACGCAAACGCATTCCGGCTGCTGAGAGACACTTGCATCGCCTCATCGATTGTCACATTTGCCACCAGAAATTCAAGAAGGCAATTCGCTACGAGGAGCACATGAAGCATCACAACGATCTATTGCCATTCCAGTGCACTGTGGAAACCTGCAGGAAGGGTTTCACTACTGCTGGTGGTCTGCGCCTTCATATGGACCACGCCCATTCAGAATTCTCTGAAGTGCACGCCTGCACGTTTGAGGGATGTGACAAGACCTTCCCTCGATCTGTCTTACTCACGTTCCATATGAAAAAGGTGCACAAAGTGGCCAAGGCTGACACCCGTAATCATCCGTGCACGGAATGTGAAAAAGTCTTCCGTTGTCCAACGGCGCTTAAGAAACACATGTATAAGCACACTGGGGAAGAGCTGCCTTTTGCATGCGAGATCTGTGGCAAACGGTTCCACATCCATAGTGTGCTTAGAGACCATCTCTTGCGCCATGCCGGTGTAAAGAATCATGTGTGCCCCTACTGCGGCGTCGGTAAAACCACTCGCCAGGAATGGAACAAACACATACTGACCCACACCAAGGAGAAACAGTTCCAGTGTCGCCAGTGCGATCATGCTTCCCACAACAAACAGGCTTTGTCCAATCACGTCAAGGTGGTTCATATGAAGATCAAGAACTTTGCGTGCCAGTATTGTGGCAAGACCTTTGGCAAATCGCATGCGTGCAAGATCCATGAGAGACTTCACACGGGCGAAAACTGCTGCGAGTGCAAGATTTGTGGCAAGATCTTCCTTTTCGAGAAAAGATTAACCAAGCATTTGCAGATCCATGAGAAACGTGAAACAGCTCCGCCTGCAACCGTTGTTAAGCCGCAAGAGGAGGGAGATGCTCAAAACACGCAGAATGTGAACCAGGACTTGACTGAGCCAGTGGATGTTAAGCCCGTGCCAATAATTCCTCCTAAACCGAAAAATTCGCATCGAGTTGAGCGTGTTGATATATCGCAGCTAGCAGGCACTTCTGTCAATCCAATATCATCAGTATCGGTGCCATCCTGGGCGCCACAAGTGAACTTCACAAAGAAGGAAGGCCAGCACATTTGTCCAGGATGTGGTCGTGGCTTCAACCACATCGGCAATATGAAACTTCACTACAAGATAATACACGAAAAGGTGAAGGACTTTGCCTGTCGCTATTGTCCAAAGCGCTTCGCCAAAGCGCAGTACCTTCGCAATCATGAATATATCCATACGGGCGAGAAGCCGTTCGAATGTAAGATTTGTGGCAAGCATTTCCGTCAGGAGCAGGTATTGAAGACGCATTTGAAGGTGCATGATAAGCCGCCGAAGCCTcccaaagccaaaaagccCCCAAAGCCATCTGTTAGCAAAGCAAAGGGATTGAAGGTTGAgctgaacaaaaaacaaccaaagATTTTTGATGAGTTCCAGGATCCCGCTGCGGAACGTGCCGCCGCAACTGCTGCATTGCTAGCACAACAGATGGAGGAGAATGAAGCAAAGCGCAAGGCAGAGGAGGAGACGCGCAAGATTCAAGAGGCTGCATGCGAGCAGCTCAACAGACTTCAAAAGCAGGTGCAGAGTGAGAAGGGCTCCTATGACAGCTACTATGGACAAAAAGCGGAGGCTGATGGTACTAACCTGGATGCTCTCAAATTAGATCATGTGTAA
- Protein Sequence
- MNEGSEYSIHSICRICLNHLRNDPAYDLFLVPGLAKKLCVCTSLSVEQHDGFPKNLCTNCYTKLNDLHGFQKLCVDSVQKFQEMVASNYFTPVIADINQIDNVDILHVPAHDGDMEEDRINFDPLLNTKIEIIENEEEVFKMLEDVDKEAEEVEKEKESSSDTEHDNDDDVDFEANSSESDDAMPLSRLRSTTRASKTKAKKSTQDDFDDDSSSSDSDDDDNDDDDDDDKPRTKPKRKRIPAAERHLHRLIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCTVETCRKGFTTAGGLRLHMDHAHSEFSEVHACTFEGCDKTFPRSVLLTFHMKKVHKVAKADTRNHPCTECEKVFRCPTALKKHMYKHTGEELPFACEICGKRFHIHSVLRDHLLRHAGVKNHVCPYCGVGKTTRQEWNKHILTHTKEKQFQCRQCDHASHNKQALSNHVKVVHMKIKNFACQYCGKTFGKSHACKIHERLHTGENCCECKICGKIFLFEKRLTKHLQIHEKRETAPPATVVKPQEEGDAQNTQNVNQDLTEPVDVKPVPIIPPKPKNSHRVERVDISQLAGTSVNPISSVSVPSWAPQVNFTKKEGQHICPGCGRGFNHIGNMKLHYKIIHEKVKDFACRYCPKRFAKAQYLRNHEYIHTGEKPFECKICGKHFRQEQVLKTHLKVHDKPPKPPKAKKPPKPSVSKAKGLKVELNKKQPKIFDEFQDPAAERAAATAALLAQQMEENEAKRKAEEETRKIQEAACEQLNRLQKQVQSEKGSYDSYYGQKAEADGTNLDALKLDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610124;
- 90% Identity
- iTF_00508555;
- 80% Identity
- -