Dema000042.1
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- RGM1
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000002.1:134073-150303[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4 2.9e+02 2.6 2.2 3 22 285 304 283 307 0.90 2 13 9.5 8.3e+02 1.2 3.5 1 23 530 553 530 553 0.94 3 13 0.18 15 6.6 0.1 1 21 558 578 558 582 0.91 4 13 0.0011 0.097 13.5 0.6 2 23 625 647 624 647 0.95 5 13 1.5 1.3e+02 3.7 0.9 3 21 654 672 654 673 0.93 6 13 0.073 6.4 7.8 1.3 2 23 693 714 692 714 0.93 7 13 0.00035 0.031 15.1 3.2 2 23 727 747 726 747 0.97 8 13 2.2e-05 0.0019 18.9 4.8 1 23 753 776 753 776 0.96 9 13 1.5e-05 0.0013 19.4 1.8 1 23 797 819 797 819 0.98 10 13 1.5 1.3e+02 3.7 3.5 1 23 827 851 827 851 0.96 11 13 0.078 6.9 7.7 4.6 1 23 856 880 856 880 0.97 12 13 0.006 0.53 11.2 2.6 1 23 888 910 888 910 0.98 13 13 0.00098 0.086 13.7 4.7 1 21 916 936 916 941 0.93
Sequence Information
- Coding Sequence
- ATGAATATGAGCGATCTGGACGATACTCACCTGTGCATAAAATGTAATAGAACAATTCTGGGACTTAACAAATACATTGAACACCGCAAACGCAACTGTTTATCTCTAGAGAAGGTAACAATTATTCCGTCAGCCACTACCACTAGTCATTGCACTGCTCTAACGTCAACAACGTCTGCACCGACTATCAGTCGTAACAATCTGGATCATACATTTGACAGTTTTCATTTCGTGGAACCAGAGACACCAACCAGTTTCCTTCGGAAATCAACTGAAATTCACGGCGTAAAGACATCTAAGACATTGACTGAGGCTTATGATCTTCCATATGAGTTAGAAGCTGATGTGTTCTTTTCATCTCTGCAGTTGCAGAGTGTTTCTACTGGTGGTAAGACTGTGTCAGGCCGTACGGACATTGCAAGATCTAAGGATGATGAATGGCATGTCCCCCGTGGAGATCCTCTACTGAAGGCAATAAGGGAACATGACGATGCGGTATTCAAACCTCTTAAGTTTGAACATGATTCCCCAGAAGCAAGTGAGGACGACGAAGAAGACGACGAACCCGATGAATTTGACGAAGAAGTTGAAGAAGATTATGAAAGACGACAATCGCCACCTACAGTTCCATCTACACATACTGGAGGTAAATGGAAGCCAGAGCATCGGCCGCAATTAAGGCATCCTCACATGGAACGCATCTCACCTAACTGGGATGACCCTGCAGATGAAACGTATGCTCATCCACCGGCTGAATATACTAAAGGAAAATGGATACCTGGTAGCAAGCAGCTGGAATATCGTGAAAACATTGATCTGACTAAGCTTCAACAATCCGAGGACAGCTATTGGTGCAATATATGTTGTCGAAGATTGAAGAGTCGTACAAATTACGAGCAGCATGTCCAAAGTGCCTTCCACTTAAAAAGGGCTGAAACAGAATGTCAACTTGAACAGGCAACATTTGGTTCGGAGCTCACAGTTAGTAGAAAATTTTCTATGGAACTGCAACAAACAATGTCATATAGAGAACGGCCAAAAAAACAGCGTCGTGGTAGTCGTTTTCGTTGTGATCTCTGCCTTCACAGTATGCCACGCCATTTGATCGGCAAGCACCTTATTTCACACTATCACTATCGACGACTTCAACAGCAAACACACTCGCGTCGTCAGATTTCGATACAAAATATACTTAACCACATGATCAGTATTGTAAAACAGTCGCCTTTCCAGTGCGTGCCCTGTCGCTTTTATGCCAACACAGAAGCAACTTTTCTAAGCCATTGGCAATCCGTTAACCACTGCAAACTTACGAGTCGTCTGGGAGGAACTTTCTGGTGTGACTATTGTCAGTTTGAGTGTGATTCAAATGAAGCAATGTGGGAGCACTTTTTGCAATCTACTCATAAGGATGTGATTTTGGCTCTCAATCGCTCAGTGCCTGTGTACATAGCTCAAAGAAGACATATTCAGTGTTCTTGCTGCAATATGCGGTTTCTCTACAACATACAAATGCGCCATCACTTTGCGTCTGAACATCCAGGACACTCACCCACAGGAAGTGCTGCCGATGACTATCAGTGCCGTTTTCGTTGTCAATTTTGTCAATCTCCCCATCGCTCCCGAGTGGCTTTGCAGCGACACGAAAAATACAAGCATCAAGTTATGAGATACTACTGCGCTATTTGTCGTTTAGAATTTGAAACGCCAATAGAAGCTCGGCGACATCGTAGTCTTATGCAGCATAGGATGAGAACTAAaccaaataaatcaattttacagCCAGAGCAATCTATCGAACAAATTTTAAGCAAAGTTCTAGAAGACCATTATCCCAATCCTTCTACTGAAAAGAGATGTAGTATACCTAAAAAGTGCAGTTACTGTTCAGAAAGTTTTGAGACGGCGCAGCTCCTTGCCCAACATCGGGCAAGTTTTCATTCTTCTGAGAATCATGGTTGCCTTAGTTGTGGATGCAATTTCCAATCTGCTCAAGCGTTAGGAAGGCATACGCGTAGCTGCCAACCAGTACCCTCAACATCCAATACacactcacaaaaaaaaactgattcaTGGCCTTGTGATAAATGCAGTTTCAGTTCGAAGTTTAAATCTGATCTTATCTATCATCAATTTTTCCACACCAAAGAAAAGACAATCCACAAAAATGAGCTACTCCAATGTCCACTATGCACAAAGCAATTCCGCAAACATTCGCTCAGGGCGCATTTACGTAATCATACAGGCGAGAAGACCTTTCAATGTAACGAGtgttttaaaaagtttgctCGGCGTCACAATCTCAAGAATCACTTGACTAGCATGCATagtcaattaaaaacaaaagaggatGATCCAGTTAAAGTATCAAAAAATGTAGGAAAGGAGTACCAATGCGAAACCTGTGAAAAGGTATTCGCCAAGAAATACTCCCTGAAATTACACAAGATGAGTCATACTAAAAAACTCAAGCGGAACTTTCATTGCCATTTCAAGGACTGCACGTATTCTGGTTTAACGCAGGAAAATCTGAAAATCCATTTAATTTCACACTCGCAGGAGAGTCACAAGTGTAGCAACGAAAATTGCAGCTATGTGGGAAAGAGTCAGCTGCATTTGAGAAGGCATCTCAAGTCCCATGCAATGCAGCAGATTCATTGGTTTTCCTGCGATCAATGCGATTTTAAGGCCCGTCTCAAGGGTCATCTTACCAGACATTTACTTCGTCACTCGGGAGTAAAGTCCCACAAATGTCCCTACTGCGATTTCCATTGCAGTACCGTTGACAATTTGCGAAAGCATATTATTAAAACGGGCAAGCATCccggaaaatttatttacgaGTGTGCCAAATGTATAAGTGAGCAACCAAAgccaatttttaaaagtaacaGCCATAAGGAATACCAGAAACATTTGACACAGCATTTAAATGATTGA
- Protein Sequence
- MNMSDLDDTHLCIKCNRTILGLNKYIEHRKRNCLSLEKVTIIPSATTTSHCTALTSTTSAPTISRNNLDHTFDSFHFVEPETPTSFLRKSTEIHGVKTSKTLTEAYDLPYELEADVFFSSLQLQSVSTGGKTVSGRTDIARSKDDEWHVPRGDPLLKAIREHDDAVFKPLKFEHDSPEASEDDEEDDEPDEFDEEVEEDYERRQSPPTVPSTHTGGKWKPEHRPQLRHPHMERISPNWDDPADETYAHPPAEYTKGKWIPGSKQLEYRENIDLTKLQQSEDSYWCNICCRRLKSRTNYEQHVQSAFHLKRAETECQLEQATFGSELTVSRKFSMELQQTMSYRERPKKQRRGSRFRCDLCLHSMPRHLIGKHLISHYHYRRLQQQTHSRRQISIQNILNHMISIVKQSPFQCVPCRFYANTEATFLSHWQSVNHCKLTSRLGGTFWCDYCQFECDSNEAMWEHFLQSTHKDVILALNRSVPVYIAQRRHIQCSCCNMRFLYNIQMRHHFASEHPGHSPTGSAADDYQCRFRCQFCQSPHRSRVALQRHEKYKHQVMRYYCAICRLEFETPIEARRHRSLMQHRMRTKPNKSILQPEQSIEQILSKVLEDHYPNPSTEKRCSIPKKCSYCSESFETAQLLAQHRASFHSSENHGCLSCGCNFQSAQALGRHTRSCQPVPSTSNTHSQKKTDSWPCDKCSFSSKFKSDLIYHQFFHTKEKTIHKNELLQCPLCTKQFRKHSLRAHLRNHTGEKTFQCNECFKKFARRHNLKNHLTSMHSQLKTKEDDPVKVSKNVGKEYQCETCEKVFAKKYSLKLHKMSHTKKLKRNFHCHFKDCTYSGLTQENLKIHLISHSQESHKCSNENCSYVGKSQLHLRRHLKSHAMQQIHWFSCDQCDFKARLKGHLTRHLLRHSGVKSHKCPYCDFHCSTVDNLRKHIIKTGKHPGKFIYECAKCISEQPKPIFKSNSHKEYQKHLTQHLND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -