Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.2e-06 0.00011 22.8 4.0 1 23 78 100 78 100 0.97

2 6 1.9e-05 0.0017 19.1 0.8 1 23 106 129 106 129 0.97

3 6 3.7e-05 0.0032 18.2 1.1 1 23 135 158 135 158 0.98

4 6 4e-05 0.0035 18.1 1.0 2 23 165 186 164 186 0.96

5 6 0.0012 0.1 13.5 0.2 1 23 192 214 192 214 0.92

6 6 0.00058 0.051 14.4 0.3 1 22 220 241 220 244 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.2e-06	0.00011	22.8	4.0	1	23	78	100	78	100	0.97
2	6	1.9e-05	0.0017	19.1	0.8	1	23	106	129	106	129	0.97
3	6	3.7e-05	0.0032	18.2	1.1	1	23	135	158	135	158	0.98
4	6	4e-05	0.0035	18.1	1.0	2	23	165	186	164	186	0.96
5	6	0.0012	0.1	13.5	0.2	1	23	192	214	192	214	0.92
6	6	0.00058	0.051	14.4	0.3	1	22	220	241	220	244	0.92

Coding Sequence: ATGCCAAATAATCCGCCAGAGCAGGGCGAAGAATTTCAGCCGGATCAAGAGTACGAATACTACTTAATTGAGGAGTACCAATTGAATCCCGATGATTTGGTGGAAGAAGATTATGACTGTGACTATAAATTGGAGAATGAGGCGCTAGCAGAATCAAAAGCAGTAGATGAAGATGATAAATCACAGATTCAGTTATATACAGTACTGCCGGCAAAAAATCCCCCATCTCTTCATTCGTGCCCACATTGTGACAAATCATTTACGCAAAAACGACGCTTGGCCGAACATTTGCGCATCCACACGGGCGAACGTCCATTCCAATGCCCCCAGTGTCCTGCCCGATTCGCCCAACGGACTAATTGGAGCACTCACATTCGTCATATACACAACAAGGAAGCAGCATATAAGTGTGCCGAATGTGAACGTAGCTTTTTCCGGCGTCGTCTGCTCGATCAGCATGTAAAGACAGTCCATCAGCAGCTGCGCGATATTCATTGCGAATTGTGCCAAGCCACCTTTAGTAATCCTGTTAACTATAAGAAGCACCTGCTTTCGCATAGCGGAGTCAAGCCCTATGCCTGTGAGATTTGTGGCAAGCAATTTGGTCGTGCCGAAAATCGGGATATACATCGTTTCCTTCATAGTAATAGCAAACCATATGTCTGCACTATCTGCAATGCCGGTTACATGAGAAAGCAACAGCTGCTGCAGCATATCAAGGCCACTCAGCATGTGAATGAGAAAATTGTTAGGCAAAAGCCACAATTTAGTCCTGCCATAGAGCAGCAGAGAAAGAAATTGGATGCGCATACAGTACAAATGGATGAAGTGGTACATGTGCTTAAGACTGATTAG
Protein Sequence: MPNNPPEQGEEFQPDQEYEYYLIEEYQLNPDDLVEEDYDCDYKLENEALAESKAVDEDDKSQIQLYTVLPAKNPPSLHSCPHCDKSFTQKRRLAEHLRIHTGERPFQCPQCPARFAQRTNWSTHIRHIHNKEAAYKCAECERSFFRRRLLDQHVKTVHQQLRDIHCELCQATFSNPVNYKKHLLSHSGVKPYACEICGKQFGRAENRDIHRFLHSNSKPYVCTICNAGYMRKQQLLQHIKATQHVNEKIVRQKPQFSPAIEQQRKKLDAHTVQMDEVVHVLKTD

Sequence clustering based on sequence similarity using MMseqs2