Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.1e-05 0.0019 19.0 0.3 1 23 88 110 88 110 0.98

2 6 1.5e-05 0.0013 19.4 0.1 1 23 116 139 116 139 0.97

3 6 0.0015 0.13 13.1 0.5 1 23 145 168 145 168 0.95

4 6 4.7e-05 0.0041 17.9 2.6 3 23 193 213 191 213 0.95

5 6 5.1e-06 0.00045 20.9 3.4 1 23 219 242 219 242 0.97

6 6 0.0014 0.13 13.2 0.2 1 23 249 271 249 271 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.1e-05	0.0019	19.0	0.3	1	23	88	110	88	110	0.98
2	6	1.5e-05	0.0013	19.4	0.1	1	23	116	139	116	139	0.97
3	6	0.0015	0.13	13.1	0.5	1	23	145	168	145	168	0.95
4	6	4.7e-05	0.0041	17.9	2.6	3	23	193	213	191	213	0.95
5	6	5.1e-06	0.00045	20.9	3.4	1	23	219	242	219	242	0.97
6	6	0.0014	0.13	13.2	0.2	1	23	249	271	249	271	0.98

Coding Sequence: ATGTCTCAAATTGAAACTGGGACCGAAATCTGTGAGCAGAAGGAGAACATCGGATTTGAATTAATTAGTGAGCATTATGTTGAAGGAGCAATCATCGATTTGGCCAGTGTAGCTTTGGGTAATCAAATATATGAAGAGTTTCTAACTGAGCAGAATAAGGAACGTGCCaagcccaaaaaaataaattcaactgACCGTGAATATCTCAAAAAGGAATCCAGACGTcgttacaaacaaaaaattaatgaaaatccTCCTAAATTTATTTGTGATCAATGTGGCATGGTATTTAAGTTATCCGGAGCCCTACTACAGCATAAACGTCGTCATAATGGCATTAAGAATTATGCTTGCCTCGAGTGCCCAATGAGATTCTATGATGCCTATCTTCTGAAAATCCATATACGTGTCATCCATAAGGGTGAGAAACCATATACCTGTAACTATTGCAACGCTGCCTATAAATATCCTTATGAACGACAAATTCATGAAAAGAATGTTCATGGAGCTGCACCACGTCGCATTGTCAATTCAATCAATAACGTCTCCACAAATAAGAGAAATAAACGCCACTTGTGTCAAATTTGTGATAAAAGTTATACTACAAGCAGCTCGCTTCAATTCCATATGAATTTACATACAGGAAAACGACCCTACAAATGTGAATTTTGTGAAGAAACATTTGCCCATCAGGCCAAATTAAGAAAACATCAGCGCCAGAATCACAATAGCCAAAGACCACCATTCGAGTGTCCAATTTGCCTGAAAGGTTTCTTTATGCTTAACGAAATCAAGAAGCATCAACTTGTACACACAGAGGAAAGGCCATTTAAGTAtgaaatgttaattatttaa
Protein Sequence: MSQIETGTEICEQKENIGFELISEHYVEGAIIDLASVALGNQIYEEFLTEQNKERAKPKKINSTDREYLKKESRRRYKQKINENPPKFICDQCGMVFKLSGALLQHKRRHNGIKNYACLECPMRFYDAYLLKIHIRVIHKGEKPYTCNYCNAAYKYPYERQIHEKNVHGAAPRRIVNSINNVSTNKRNKRHLCQICDKSYTTSSSLQFHMNLHTGKRPYKCEFCEETFAHQAKLRKHQRQNHNSQRPPFECPICLKGFFMLNEIKKHQLVHTEERPFKYEMLII

Sequence clustering based on sequence similarity using MMseqs2