Dema014503.1
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- bab2
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000260.1:1215046-1217190[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-12 1.4e-08 34.7 0.1 1 44 409 452 409 453 0.91 2 2 3.3 6.5e+03 -2.7 0.9 4 20 550 565 550 565 0.86
Sequence Information
- Coding Sequence
- atgggtggtggtggcggtgggcCCACACCCACTCCCGTTGCCAGCAGTGAAGGGCAAACTTATTGCCTTCGTTGGAATAATCATCAGACGAATTTAGTACAGATACTCCATGCACTGCACGAGGTGGGCAGCTATGTGGACTGCACTCTTGTCGTTGATGATGAACAGTTTAAGGCCCATCGTGTTGTATTGGCAGCAAATTCACCATATTTCCAGCATATATTACAGGATGTGCCACAGGATCACTGTAGCATTATATTGCCCGGAGTCAAGGGTTTCGAAATTGCAGCACTTTTACAGTATATGTATACGGGTGAGACGACAGTTACTAAAAGCCAGGAACCGGAAATTCTACGTACGGCCAAAGAGCTGCAGGTGAAGGGTCTCTATGATAATTTAATGaagttcaacaacaacaaacagtcgggagcagcaacaacagcagaggAACGTGTACAGAGTCATTATCATGCTAGTAGCATAGCTCCAACATCTAGTTCCGGAGCCACAGGCAAGCCACAGAATGGCGATAGCTTtggccaccaccaccatcatcatcatcatcagcaacagcagcagcaacagtcgTCCTCCTCCGTGATCTCAACGTCCACGCACATTTCACCCAGCGCCGCCATTTCGAGCAGCTGCTCGCCACCACCTCCCCCATTTGGAGCTTATCAGCAGCCGCCATATACGAATTATCCATCCGGACCAAGCCATCCACATATTCCAGCTGGTGAGACCCCATTGACACCCACACATGCTACATCCCATGCTGCAGCCGGTGAGGCTGGTGGCCAATGGCCACTCTCTCCCtctgctgccgccgctgccaTGTTGAATTCCGTCTATGAGAGTGCAGCCGATATGAATCCTCTCAAGCGCAAAAAACTCTCGGCCATATCCAGCATGTTGCTTAATAGTACTCGTGACACTCCTATTCTTCGTAATGTACTGGCCCAGGCCAATCCGGCGGACTCTtcccaacagcagcaaccaaaTCCTTTGCTCTTGAAGAGTTCTTCCTCATCTTCATTGGCGGAAAAGGCTCCCTCCCATCAGAGCGGTGGTGTGGGAGGTGGAACCGGTAGCCACAGTTTTAATGGCTCAGATTATGGCGGTGATAAGGAACCCCTTTCGCCGCACACAGATCGCTCTTTTGACGAGGAAACTGGTGGTCCTGGTGGCAAAAAACCAGAGTGGAAGCGCTACAAGCAGTATACACGTGCCGATATGATGTGCGCCATTCAGGCGGTGCGTGAGGGCATGAGTGCCTTACAGGCGAGTCGAAAATATGGTCTACCCAGTCGAACTTTGTACGATAAGGTACGAAAATTGAACATTACCACAGGTCGTGGCACTCATCGTACACCTAAACGTAGTCCACCTGGGGTGGAGTCATCGGCCGCCTTTCCCTATTCCgccgctgctgcagctgctgctgcccacAACTATGGCCATGGTCAAGCAGAACTGCTAGATCGCAGTGAGCAGGCCAAAGAGCATGGTtctcatcatcaacatcacgGCATGACACCAACAATATCCCATTCGGCAGCCGCCCTACTGGATCATGCATTCCTTCAGCAGGCCCTGGAGAACCGTGGTGGCGATATGGCTGGACGAGAGGCTTTACATGCCATGGCATTGGCTGCGGCTGCACATGCTGCTGCTAATCGTATGTCCACAAGTCCGCCAGGTTCCGGTTCAAATGGTCATCCGCATGGCGCCCGATCACCCAGTCCCAGCCCAAGTCCACGTCATTATGCCGAGGATCTCGAAATGCATGAGGCAAAGCATGAACGAATGATTAAACGTGAACGGGAGCAGGACGAACGTGAAGATGCCGATGCTGATGATGAAGAGGATCATGATCATGTTGAAGATTTATCGCTGGCACGAAAAGAAAGACCCGAATCGCCATATTCGCCGCCACCGCCAAGGGCTTCGTCTCCCATGGAGGGTGCCAGTGTCATAATGCACTCCTCGAACTCGACGTCAACTAATGGCAAAGAGCATGAGGATTATCCAGTTTCAGCTACatcgccaccaccaccaccattacCAGTGGATTTGGGTCTAGGACTGGGCCTCAAACGGGAACTAATGGGGAGCGATGAAACGCAAGCGCGCACAGACTGA
- Protein Sequence
- MGGGGGGPTPTPVASSEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDEQFKAHRVVLAANSPYFQHILQDVPQDHCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNNNKQSGAATTAEERVQSHYHASSIAPTSSSGATGKPQNGDSFGHHHHHHHHQQQQQQQSSSSVISTSTHISPSAAISSSCSPPPPPFGAYQQPPYTNYPSGPSHPHIPAGETPLTPTHATSHAAAGEAGGQWPLSPSAAAAAMLNSVYESAADMNPLKRKKLSAISSMLLNSTRDTPILRNVLAQANPADSSQQQQPNPLLLKSSSSSSLAEKAPSHQSGGVGGGTGSHSFNGSDYGGDKEPLSPHTDRSFDEETGGPGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGVESSAAFPYSAAAAAAAAHNYGHGQAELLDRSEQAKEHGSHHQHHGMTPTISHSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSTSPPGSGSNGHPHGARSPSPSPSPRHYAEDLEMHEAKHERMIKREREQDEREDADADDEEDHDHVEDLSLARKERPESPYSPPPPRASSPMEGASVIMHSSNSTSTNGKEHEDYPVSATSPPPPPLPVDLGLGLGLKRELMGSDETQARTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00501130;
- 90% Identity
- iTF_00483777;
- 80% Identity
- iTF_00501130;