Dema020296.1
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- -
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000324.1:145711-146964[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-12 3.6e-09 36.6 0.0 3 41 252 290 250 294 0.92 2 3 0.016 31 4.8 0.0 27 38 323 334 319 338 0.89 3 3 4.6e-15 9e-12 44.9 0.0 2 44 360 402 359 403 0.93
Sequence Information
- Coding Sequence
- ATGGGCCATGCGGCCACCATTATGGGAATTCAGTGCTCCCTGCTAAATGACGACAAATCGTGTGAAGTTATTCTGGCAACCCAAGATGGGTCAAGTGAACGTGCTCATCTCTTTGTCCTCTGCACATGCAGCGATTTGATGCGGGATCTGTTAAAGGATTTACCACCAGGCCAGCAGGCAACCATAATTCTACCCGACATTCGAGGCGACCTGTTGGAAAGTATACTCTCGTTTATATACGTAGGCGAAACAAGCCTCCCCTCAGATTCCCTAACTGAATTTATGGAGGCGTTGAATGTACTCGGCATAAAGGCGCCAATAAGGTTCAAGTGCATTCCCAATTGCgatttgcaaattgaaaattctgaATTTTTCGATGAAGAATATGAAATTGGGGAACAAGAACCAGATGATGAGAATGAAGATGATACggaaattaattgcaaaaataaagtaGAGGAACAAGAAATGCTATTGCTTGAAGATGAATATGTGGTAAGCGATCCCTTAACCAGTTCGGCAGTTTGCACAGATGCTGAAATGGATGAACCTGAACCTGAACCTGAACGTGAGGATGATGGTGATGACGACGATGGCGCTGTGTTTGATGTAATGGATGTGAAAGTGAACTCGAAACcgaagccaaaagcaaaaccacGCAGCGAGGCTTCTGCAAAGATAAAACGCCCAGCCGACAAGCAGCCACGAAAACATAGTGATTCCCACTTTATCGAGGGTAAAGATGGCATCACTGACGCACTGGAACTGGCCGCTGATGCCGTGATCCGACTCAAGTTTAGTCTACAAAAGGCTGCTGATCGCTATGACATATCGAAAACAGTTTTATGGCGTCGCGTTCGCAATTATCCGGAATACATACGCACTAATCGAAAGAATCCCATGCTTTCGGAGGCGTACAAACGTCTTAAGAAGGGACATtctttaaaaagtatttgcaCTGACCTAAATATACCAATGTCTACTCTCCACCGCCACAAGATGCGTCTGGCATCCGAGGGGCAGTTGCCTAAATATGGGAACGACCGTCGTCGTGATACCACACCAAAAGATGAACTAAACGACAAGCTTTTAAAAGCGATGCACGCTTGTATTTACGATGGCATGACAGTGAATCATGCGGCCAATCTATTTGAGTTACCCAAGAGCACGCTTTGGCGTCACTTGCAACGGAATACTGATAAAAAGCCGACCAAAGGGAAAAAAGCTCAAAAACAGAATTCCGAAGAAGAATAA
- Protein Sequence
- MGHAATIMGIQCSLLNDDKSCEVILATQDGSSERAHLFVLCTCSDLMRDLLKDLPPGQQATIILPDIRGDLLESILSFIYVGETSLPSDSLTEFMEALNVLGIKAPIRFKCIPNCDLQIENSEFFDEEYEIGEQEPDDENEDDTEINCKNKVEEQEMLLLEDEYVVSDPLTSSAVCTDAEMDEPEPEPEREDDGDDDDGAVFDVMDVKVNSKPKPKAKPRSEASAKIKRPADKQPRKHSDSHFIEGKDGITDALELAADAVIRLKFSLQKAADRYDISKTVLWRRVRNYPEYIRTNRKNPMLSEAYKRLKKGHSLKSICTDLNIPMSTLHRHKMRLASEGQLPKYGNDRRRDTTPKDELNDKLLKAMHACIYDGMTVNHAANLFELPKSTLWRHLQRNTDKKPTKGKKAQKQNSEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00501159;
- 90% Identity
- iTF_00501159;
- 80% Identity
- iTF_00501159;