Basic Information

Insect: Drosophila dives
Gene Symbol: sna
Assembly: GCA_035042365.1
Location: JAWNLJ010000414.1:673244-674440[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 8.8e-05 0.0062 16.9 2.6 1 23 253 275 253 275 0.97

2 5 7.7e-06 0.00054 20.2 0.6 1 23 288 310 288 310 0.98

3 5 2.1e-08 1.5e-06 28.3 0.4 1 23 314 336 314 336 0.97

4 5 1.6e-09 1.1e-07 31.8 0.3 1 23 342 364 342 364 0.99

5 5 9.9e-06 0.0007 19.9 1.3 1 20 370 389 370 391 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	8.8e-05	0.0062	16.9	2.6	1	23	253	275	253	275	0.97
2	5	7.7e-06	0.00054	20.2	0.6	1	23	288	310	288	310	0.98
3	5	2.1e-08	1.5e-06	28.3	0.4	1	23	314	336	314	336	0.97
4	5	1.6e-09	1.1e-07	31.8	0.3	1	23	342	364	342	364	0.99
5	5	9.9e-06	0.0007	19.9	1.3	1	20	370	389	370	391	0.93

Sequence Information

Coding Sequence: ATGGCCGCCAACTATAAAAGCTGTCCGCTGAAGAAGCGCCCATTTGTGTTCGTGGAGGAGCTGCCGCAAACGGAGGCCTTGGCTTTGATCAAGAGCTCACAGTTTGCCGCAGCTGCCGTGCAGCCACTGGAGGAGCAGCCACAGGATTTGTCGCTCAAGCGCAAAGCCAGCGATTTGAAATTTGAGGATTATGAGCTGCCCGCCAAGCGTGAATACGTTCTTAATCTCTCGAAGACACCACGTCGTGCCCAGTCACCGCTTAGCTCGGCGCTGCTCTCGCCTCCGGCGGAGTCCAGCTGCCAGGATTACCAACCCACCGATATACACATGCGCGGTTTGACAGCTGCCACCGCCGGCTACACCACGAATCCGTATCAATCCGCTTTCGTGCTCGCCGCTGGCTGCAATCCGATCTCCGCTTTGTGGAGCAGCTATCAGCCTCATTTAAATAGCGCTGCTGCGTTCCCATCGCCAGCCAGTTCAATGGCCTCGCCGCACTCGGTGTACAGCTATCAGCAGATGACGCCACCATCGAGTCCCGGCTCGGATGCCAGCTCCGAGCCGGAGGATCTCTCTGTGCGCAACGACATTCCGCTGCCGGCACTGTTCCATCTCTTCGACGAgacacgcagcagcagcaacagcagcatctgctccagcaacagcaacatcgcTCCATTCTCATACGCCGCCGCCTCCAACATCTCTGgatcaagcagcagcaacgccgTCAGCGCCTCCGCCAAGAACTATCGGTACAAGTGCGACAACTGCCAGAAGATGTACTCCACCTCGATGGGATTGTCCAAGCATCGCCAGTTCCACTGTCCCGCTGCCGAGTGCAACCAGGAGAAGAAGCCGCATTCCTGCGAGGAGTGTGGCAAACTCTACACCACAATCGGAGCACTCAAGATGCACATCCGCACCCATACGCTGCCCTGCAAGTGCCCCATCTGCGGCAAGGCCTTCTCCCGTCCCTGGCTGCTCCAGGGTCACATTCGCACCCACACCGGCGAGAAGCCCTTCCAGTGCCCCGACTGCCCGCGCTCCTTTGCCGATCGCTCCAATCTGCGAGCCCACCAGCAGACCCACGTGGATGTGAAGAAGTACGCCTGCCAAGTGTGCCACAAATCCTTCTCGCGCATGTCCCTGCTGAACAAGCACACCAGCTCCAATTGTACCCTTACAATTGTCTAA
Protein Sequence: MAANYKSCPLKKRPFVFVEELPQTEALALIKSSQFAAAAVQPLEEQPQDLSLKRKASDLKFEDYELPAKREYVLNLSKTPRRAQSPLSSALLSPPAESSCQDYQPTDIHMRGLTAATAGYTTNPYQSAFVLAAGCNPISALWSSYQPHLNSAAAFPSPASSMASPHSVYSYQQMTPPSSPGSDASSEPEDLSVRNDIPLPALFHLFDETRSSSNSSICSSNSNIAPFSYAAASNISGSSSSNAVSASAKNYRYKCDNCQKMYSTSMGLSKHRQFHCPAAECNQEKKPHSCEECGKLYTTIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHTSSNCTLTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00502699;
90% Identity: iTF_00528241;
80% Identity: -