Basic Information

Insect: Drosophila cracens
Gene Symbol: -
Assembly: GCA_035042505.1
Location: JAWNLF010000946.1:1477099-1479734[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.1 2.1e+02 2.7 2.6 2 23 333 355 332 355 0.95

2 10 7.3 4.9e+02 1.5 1.2 2 23 374 396 373 397 0.80

3 10 0.0057 0.39 11.3 0.5 3 23 413 434 411 434 0.94

4 10 0.0078 0.53 10.8 0.1 6 21 480 495 475 496 0.88

5 10 0.29 20 5.9 2.7 3 23 505 526 503 526 0.94

6 10 8.3e-06 0.00056 20.2 1.7 1 23 532 554 532 554 0.98

7 10 0.0043 0.29 11.7 0.5 1 23 559 582 559 582 0.96

8 10 0.12 8 7.1 0.6 2 23 590 612 589 612 0.95

9 10 1 70 4.2 0.5 2 23 619 640 618 640 0.94

10 10 0.0015 0.1 13.1 1.5 1 23 645 668 645 668 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.1	2.1e+02	2.7	2.6	2	23	333	355	332	355	0.95
2	10	7.3	4.9e+02	1.5	1.2	2	23	374	396	373	397	0.80
3	10	0.0057	0.39	11.3	0.5	3	23	413	434	411	434	0.94
4	10	0.0078	0.53	10.8	0.1	6	21	480	495	475	496	0.88
5	10	0.29	20	5.9	2.7	3	23	505	526	503	526	0.94
6	10	8.3e-06	0.00056	20.2	1.7	1	23	532	554	532	554	0.98
7	10	0.0043	0.29	11.7	0.5	1	23	559	582	559	582	0.96
8	10	0.12	8	7.1	0.6	2	23	590	612	589	612	0.95
9	10	1	70	4.2	0.5	2	23	619	640	618	640	0.94
10	10	0.0015	0.1	13.1	1.5	1	23	645	668	645	668	0.97

Sequence Information

Coding Sequence: ATGGCCGCCGCAGCGGATGCTGCAAAATGGAACGCGTTGCTGGCGACAAACAAAGCGAACAATACAAAATGCCGCGCTTGCCTCGCCGTCGGTCGCCAGACGGTCAAACTGGATGCGAAAATACCGGAACTGAAGAAAGTGCGCACGTACGGTCAGGGATTGCGCCAGTGCACGAATATACCGTTAACCACTCGCTCCGCCGGCGGCTACAGGTGGCCCATGCAGATCTGTTTGCGCTGCTGTCGCGCCCTCGAGGTGGCCGTGCATTTTGTGGAACTGACACTGGAATCGAATCGGAAATTGTTTGCTGAATCGCAAATTGTCAAGccaatgacgacgacgacgatgaagGGTGCGTCGGGTGAGCTGAAGCGCAAGGCGAGTGGCAGCAGTGAGATGTTGAATTGGAATCAATTCAGTCAGGAGTTTGAACAATTTGTGGAGAGCTACGATGGGATCACAGCGCCCATTGAGGAGAATGTGCTGTATATGCGGGGTGCCAAAGTGCCACGCCTCGATGCGGACATAGCAACCAACCGGCAGCCACCCGAGGAGGATGATGTCATCTTATTTGATGTAAAGTATGACAGCAATGATCAGGATCAGGAGGATGAGAACGATGGCTCTGATGCGAAGAACAGCGAAACCTTCTATGACACTAGTATTATAAATGAGAACAACCAATCTGTCGCGGCTGGCATTACAAACAGCaccgagaacaacaacaattataatttcaataataagaATGGGGATGTGGAGGGCGATCTCATCCAGCGTGCCCTCTTCATGACGCTCAACGATGatgtcaacaacagcagcagcagcagccaaacaacaacgTACGATTTACAATGCATTGAATCCATCAAAGCcacattattaaaatCTTTGGAGGAAGAGCAGCTGGAAGGCACAACTGTCAACGGCTTGAGGAGCAGTTTGACCAGCAAATCAACGCCCAGTAGGGAGATCAATGTCCAGATACCGCTGCTCAGCTGCAGCATGTGCAAACAGACGCACACGGAGGCCAAACAGATGAGGACACACTATATGCGTGCCCACAGCTGTGATGTGCCCGAGGATGATATCATTGGCCTGACAAAAAATCAAAGCTTTAAGTGTCGTCCATGCAATGATTATGTGACAAACAGTCGCTCGGATATGCAACAGCATCTGATTGAACATCACAAAATCGATGGGGATTTTGAAATGTATTGTTATGTGCAACAGAATTGTCCCGCCTGTGGGCGCATCTTCAAGGATCAGCGCTCAGCACGCACACACtacacacgcatgcacacaccacaacagcaacaacaacaacaacagcagcagcaacaacagcagcagcagcaaccacaacaacaacagcagttgcagcaacaatcTGTCAATGCAGTCGAGCAGCAGCCTCAACAATTTGTCTGCATCGCCTGCGATAAGGTATTCAATTTAAAGGGCAGCCTGCAGGCTCATCAACGTTTCTGCCAGGTGAAGCAGCCGGTGCACTGCACCTTCTGCAAAGAGCAGTTTAGCACCATACGCAAATACGAGTTGcacctgcaacagcagcacgcTGTGCACACGTTGCACGAGTGCGAGATATGCCTGAAGAGTTTCAAGAATAGCGATTCGCTGGCTGTGCATCGCAAGCGGCACTCGGAGCGACATTTTCACTGTGACAAGTGTTCGCTGAACTACATCAATGCCGCCGAGTTGCGGGTGCACTATGAGCGTGCCCATGTCCACGAGGAGCAGGTGGTCACCTGTCGCAGCTGTGACAGCACATTTCAGAATTACGCACTGCTCCGCGAACACGAACAGCGCTCGCATCAAAAACTCAAGATTTGGCGCTGCGACAATTGCAGCTTTGAGGCGAACTCACGTGCTCGACTGCGTCAGCATCAGTACGAGCACATGGACTATCCGTACAAGTGCCAGCACTGTCCCGAGGAGTTTGCTGATCGCGGCAAAATCCGTCAACATTCCAAGAAGGTGCACTCGGTGGAGCTGAGCGATGATCAGCTGGCGGATATGTTTCGGGAACGCATCGGCTACACCAATCGCCATGATGCGTTCAGTAAGTCGAACAACTCACTAGAGATACCCGGTTTTAGTGATGATTGCTTTACGGAGCTGAAGAGTCTGGGCCTGGACTATGATGATATAACAACCGATCTCTTCTCGAATTCCATTAGCACTCTGGACACTCTGCTCGAATTGGTACCCTGA
Protein Sequence: MAAAADAAKWNALLATNKANNTKCRACLAVGRQTVKLDAKIPELKKVRTYGQGLRQCTNIPLTTRSAGGYRWPMQICLRCCRALEVAVHFVELTLESNRKLFAESQIVKPMTTTTMKGASGELKRKASGSSEMLNWNQFSQEFEQFVESYDGITAPIEENVLYMRGAKVPRLDADIATNRQPPEEDDVILFDVKYDSNDQDQEDENDGSDAKNSETFYDTSIINENNQSVAAGITNSTENNNNYNFNNKNGDVEGDLIQRALFMTLNDDVNNSSSSSQTTTYDLQCIESIKATLLKSLEEEQLEGTTVNGLRSSLTSKSTPSREINVQIPLLSCSMCKQTHTEAKQMRTHYMRAHSCDVPEDDIIGLTKNQSFKCRPCNDYVTNSRSDMQQHLIEHHKIDGDFEMYCYVQQNCPACGRIFKDQRSARTHYTRMHTPQQQQQQQQQQQQQQQQQPQQQQQLQQQSVNAVEQQPQQFVCIACDKVFNLKGSLQAHQRFCQVKQPVHCTFCKEQFSTIRKYELHLQQQHAVHTLHECEICLKSFKNSDSLAVHRKRHSERHFHCDKCSLNYINAAELRVHYERAHVHEEQVVTCRSCDSTFQNYALLREHEQRSHQKLKIWRCDNCSFEANSRARLRQHQYEHMDYPYKCQHCPEEFADRGKIRQHSKKVHSVELSDDQLADMFRERIGYTNRHDAFSKSNNSLEIPGFSDDCFTELKSLGLDYDDITTDLFSNSISTLDTLLELVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560615;
90% Identity: iTF_00525464;
80% Identity: -