Basic Information

Gene Symbol
-
Assembly
GCA_035041545.1
Location
JAWNLD010000077.1:2185411-2219599[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.013 0.84 10.2 1.8 1 23 1105 1127 1105 1128 0.95
2 8 0.5 32 5.2 1.0 1 23 1133 1156 1133 1156 0.96
3 8 0.00071 0.046 14.1 0.4 1 23 1388 1411 1388 1411 0.95
4 8 0.0028 0.18 12.3 0.8 2 23 1420 1441 1419 1441 0.97
5 8 0.044 2.9 8.5 0.3 1 23 1448 1471 1448 1471 0.96
6 8 1.7e-05 0.0011 19.2 1.4 1 23 1477 1499 1477 1499 0.97
7 8 3e-05 0.002 18.5 0.4 1 23 1504 1526 1504 1526 0.99
8 8 0.0021 0.13 12.7 3.4 1 23 1532 1554 1532 1554 0.99

Sequence Information

Coding Sequence
ATGAGTGCCAACAAGCGACGAcgtagcaacagcaacaagaaggATGTGCAAAGCGGAGGAGGAATGCAAGCAGTTGACGACGACGTCGCTGCGCTGCTCGAAATGCCGCGTGtgtgtcgttgttgttgcaaagGTGACCTGGAATTGCAGCGCCTGTTCGAGGCCGATGAAGAGGCAACCAAACAGACGACACTGCAACAAATACGCCGACGCAAAACAATAGCAACCAGAGAAATAGCAAAATccgcacaacagcaacaacaacagcgcaaaAGTGATAATCCCGTGGAATATGCGCTCAGCGGCGCGCACAGCAGCATGGACACTGTGCGCGAGGAAATGCTCGTATGGATGCTCAATATCTCCCGCAACGATGGCCTGCCCCAGGAGATTTGCCGGCAGTGCAAGGCGCAGTTCATCATGGTGGCCAAGTTCCGGCGGCGTTGCGTGCGCGTTCAGCAGCGTCTGCTGGACTATGCGCAGAGCATAGCCGCGAGAAAGCCACAGCCGGAGGCGGaggaggagcaacagcagcccagTGGGGACTATCAGCATCTGCCGGAGCGCAAGCGTCAACCGGAAACGGAGCCAAAACAAGCCAAGACTGAACCAGCCGACCAGTTGCCGACGCCTCCAAAATTGCGTCGACTGCAGCTGCGTGTGCGCAACATGCGCATCGCCTCCTTGCCAGCCTGCCGGACCGCGATTGAGCCAGAGTTGGAGAATGCGTCGGCGAGCTCGGAGCAGCGTCCGGCGACGCGCAGCGTCTCGCAGCAGGACGAGCTGAGGGAGCGGACGCCGCAGCGGAACGCCTGCCGGCGAATACATGTGCCCTGGAAGACGAAGGCGGCACGCAAACAGCTCTCCGAAACGTGGTCCAACTGCTCGACGGCCTCCGACTGTCGCACggacgagcagcagctgccgcaggcGCCAACACCAGCGCCCAGCtcggaggcggaggcggaaGCGGAATCGAGCGCCGGTCAAACGTCGCCGGAGCAGCTCAGCGATTTATCCGTGAATCCCTcagcagcagcagcagctgcgtgcGCCAAACTCGAGTTTCCGCCAAAGCGAGCTGCCGGCAAAAAACAGCTCGTGGCGCTGCGACGTCTGCGTGCCAGCTCCGTGCCGCTCCAGCGGGCGAAGCGGGAGCAGCAGAGAGGCAACTCACCAAAGGAGGAGCAGCTGAACAACAGCTCCTCgaatgaaccagatgagcagGTGGCGTCCGCAGTGGAGCCAAGTGAACGTAAAGAAGAGCTAGAACTCAGCAGCAACGAGCAGGCACAGCACGCGGAGCAAGTGCAGCTCCAATCTCCGCCAGAATCAATTGAAAGTCAGGCGAAGCTGGCAAAAATGGAAGCCCAAATGGAAAGCATATCAATAGAAGAAGCAATAAACGGGACaaagcaggagcaggagcaggagcaggtgcaggagctggagcACGAGCTGGCCACCACAAATGGAACAGCAGATTCCACGGTGCACAGCGACGAGCTAATCTCGGCCAGGCAATCGCTGACGCCCGAAGTGCCGCCAGCTGAATGCGAAGTGGaggtggtgggcgtggcaaacgaagagcagcagcagcagctgactGAAGAGCTAGCCAACGAGCTGTCGGAGGACTCCAAGTCCGAGCTTATAGTCAGCATACCCTTGGATGTGCTcggcgagcagctgcagcgcaagCTCTGCGTTAGCGAGGAGCTCGAAGCACAGCCCGAAACGCCGCTAGAGGATCAGGCCAAGGAGCCGGCGCAGGCGGACGATGTCAACAACAATGCGAATGGCGAGAATTTTTGCCAGAGTGCCGCAGCAGTTAGCTTCAATGCTGCTGTGGCACTCGCGACCCAACCAATTGAAGCAGAACCGAATGGAGGCGTTGCCCATGTCGACGACGACATGGACTCGCTGGAGCGGCTGGCCGCGATGCAGTCGCCCCAGCGTGAACGAGGCGACGAAGTGCAGCCGCTGCGGGCGCCGGTCAATACCAGCTCCATGGACTTCCTGGCCGAGTTTGAGAAGCATTGCGAGAAGACGCTCAAACTGaagacgacaacgacaacgacgcgGCCGCAAATCGAAATGGAAACGGGAATGGCAACGGAAATGCCAACGGAAAtggaaacggaaacggaactggaactggccgaggccaagcagcagctgcaggtggAAATGAACGATGTGGAGAGCACGCTCCACGGCATACTCAACGAGATGCAGGACGAGCATCTCTACACGCCCATCGATGAGTTTCTGACGCCCGCCGACTACGAGCCGCCCGCGGAGGGGCCGCATCAGCAGCCGGAGGAGCCGGCGAAGGAGGGGAATCTCTTTGACAGCAGCAACTTTAGCAATGAGCTGATCGGCTTCCAGAACGATATGCCCTGCTTTGAGAACATTGAGGCGACGCCCGAGTCCAGGGAGAGTCTGCATCTGGAGCTGACGCAGCTGCTCAACGAGCTGCAGccggcgcagcagctgcaacaacaacaacaacaacaacagccacagcagcaacaattgccgCCGGAATCTGTCAGCTATGAGGCACTGTATCCGGCCGCGCTTCCGCCCGTCGCCTCGCTGAGCAGCAACAAGCTGCAGCTGATACAGATGCAGCCGCCGGAGACGCTGTGGCAGGCGCAGCCAACGGCCCAGcagacaacaacgacaacaacaacacagctgCAATGGTCGGCGGTGGGCGGTCTGGAGGCGATCAAAACGACGACAGCGACACCGCTGGACAATATGGAGGGCAGCGCGACGACCACGTACTACATCAATGCCAGCGATCTCTATCCGCCAACGGGCGAGGGCTACACGCTGCTcgacagcaacgacaactatctgcagcagcagcagcaacagttgcagcagcagcagcagcagtcacagcagcagcaacaattgcagcagcagcagcagcagcccattATGATACTCATACAGCAGCCGGAGATGCAGCAGCCGGTGGCATCCGCCAGCAATCCGCAGCAGGCGCCGCTGCACATCAGCTACAGCAACGAGCTGCAGgcttatcagcagcagcagcaacactcacagctgcagcagcagcaacaacagcagctacagcaacagcagcaacatcagcaacaacagcaacaacaacaagtaccAAGTTCAGTATTAGCCGctgtgccgccgccgccgccgcccagccGTGGCCGTCCGCCCATGCTCAAGTGCCGCTTCTGCCAGAACGGGCCGCGCTTCTCGAGCAGCCTCGAGTACAGTCGCCACATCATCGAGCTGCATCCGGCCATTGCGCCCTTCAACTGCCCGCACTGTCCGCTGGCGTTCGCCGGGCGCAGCAAGCGCAGCCAGCACATCCTCAGCCATCACATGGTGCAGCAGTTCCACTGTGGCCAGTGCTCCCAAATGCTGCCCTCGCAGCGGGCGCTCGACTTGCATCTGCAGAGGTTCCACATGCCGCTACCCACGGAGACGGCGGCGGGGACGACGGGCGTTCGCCTGGAAGAGGTTCAACTGcaaatggccaacaacaacaacagcagcgagcagcccaaacagcagcagctgcagcagcagcagcaacagatgCTGCATCATCTAACATCTCCACATATGCCGGCTTTGGAGTTGCAAACAAGCCCGTCCCAGCCACGCAGAACGCGCATTCTCTGCTGCCCGGACTGCGAGGACTGCCCTGCGGCCAGTGGACACCAGCATGCCAgcgggcagcagcaacagccgccgccgccgccgtacGAGGAGCTCAGCCAATTGCAGGCGCCGCCAACGGTGCTGACGCCGCCGTCGACAATTGcgtcgctgccgtcgccgcagccgccgccgccgctgcacATAACGCTGCCCTCGCCGGAGCAATCGGAGCCGGACTCGACGACGGCAACGTTGCGGCAGTTCCGCAAACGCTGCATGGCCAGCTGCACAATAgctgccacagccgcagccgcagcatcagcagcagcagcaacaacaatagcaacaacaacgacagcaacatcagcaacagctgccgcagcagcagcagcaacaacactgCTAACAGCTGCCTCGCCATCGCCCTCGTCGTCACCGTCCTCCTCGACGATGGAGCCGACCGCCACAGTCCAGCTGGGCAAGCTGCGGAGCAGTCATCCGTGCGTCGTCTGCGAGAAGCGCTTCACGAACATCATTGCGCTGCGAAAGCATCAGCAGCTGGCGCACGATTCGCAGACGACGATGCCGTGGGTGTGCTCGATCTGCAAGCGGGGCTATCGGAAGCGGACGGACATGGACAATCATATGAAGTCGCACGAGCCGAAGGGTCGGCCGTACGAGTGCAACGAGTGCTGGGTGCGTTTTCCCGAATTTAAGCAGCTGGCGATGCACAAGTTCACCGTCCACGAGCTGATCAAGCCGCATACCTGCGATGAGTGTGGTAAACAATTTGGTACGGAGAGCGCCTTGAAGACGCACATTAAGTTTCACGGTGAGCGCGGTTTCGAGTGCGATGAATGCGAAGAGGCATTCGCCTATATCAAAGATTTGCGCAAGCATCGGCGCACCCACAACACCGAACTATTTTACAAATGCGATTATTGTCCGCGCACGTTTCTACATTTTACGAGCTATAACGcgcATATAAATACCCACCTGCCGCTGGGCGTGTTCCTCAACGACAAGATGCCCAGCAGCGTGAGCAGCAAATCCGATAATCCATTGACGCCATTGATGGCAACCAACGAGGACTCCTCGCTGCCATTGACGCCGCTCAGCAATTGCAATGggaacagcggcagcggcagcggcgaggATTGCCCCAGCTCTGTGGAAACGATGGTGGAGAGCAGTGGAGCGTTGGCGCCATCGTTGGATATGATTGCCGATACGCCGTAA
Protein Sequence
MSANKRRRSNSNKKDVQSGGGMQAVDDDVAALLEMPRVCRCCCKGDLELQRLFEADEEATKQTTLQQIRRRKTIATREIAKSAQQQQQQRKSDNPVEYALSGAHSSMDTVREEMLVWMLNISRNDGLPQEICRQCKAQFIMVAKFRRRCVRVQQRLLDYAQSIAARKPQPEAEEEQQQPSGDYQHLPERKRQPETEPKQAKTEPADQLPTPPKLRRLQLRVRNMRIASLPACRTAIEPELENASASSEQRPATRSVSQQDELRERTPQRNACRRIHVPWKTKAARKQLSETWSNCSTASDCRTDEQQLPQAPTPAPSSEAEAEAESSAGQTSPEQLSDLSVNPSAAAAAACAKLEFPPKRAAGKKQLVALRRLRASSVPLQRAKREQQRGNSPKEEQLNNSSSNEPDEQVASAVEPSERKEELELSSNEQAQHAEQVQLQSPPESIESQAKLAKMEAQMESISIEEAINGTKQEQEQEQVQELEHELATTNGTADSTVHSDELISARQSLTPEVPPAECEVEVVGVANEEQQQQLTEELANELSEDSKSELIVSIPLDVLGEQLQRKLCVSEELEAQPETPLEDQAKEPAQADDVNNNANGENFCQSAAAVSFNAAVALATQPIEAEPNGGVAHVDDDMDSLERLAAMQSPQRERGDEVQPLRAPVNTSSMDFLAEFEKHCEKTLKLKTTTTTTRPQIEMETGMATEMPTEMETETELELAEAKQQLQVEMNDVESTLHGILNEMQDEHLYTPIDEFLTPADYEPPAEGPHQQPEEPAKEGNLFDSSNFSNELIGFQNDMPCFENIEATPESRESLHLELTQLLNELQPAQQLQQQQQQQQPQQQQLPPESVSYEALYPAALPPVASLSSNKLQLIQMQPPETLWQAQPTAQQTTTTTTTQLQWSAVGGLEAIKTTTATPLDNMEGSATTTYYINASDLYPPTGEGYTLLDSNDNYLQQQQQQLQQQQQQSQQQQQLQQQQQQPIMILIQQPEMQQPVASASNPQQAPLHISYSNELQAYQQQQQHSQLQQQQQQQLQQQQQHQQQQQQQQVPSSVLAAVPPPPPPSRGRPPMLKCRFCQNGPRFSSSLEYSRHIIELHPAIAPFNCPHCPLAFAGRSKRSQHILSHHMVQQFHCGQCSQMLPSQRALDLHLQRFHMPLPTETAAGTTGVRLEEVQLQMANNNNSSEQPKQQQLQQQQQQMLHHLTSPHMPALELQTSPSQPRRTRILCCPDCEDCPAASGHQHASGQQQQPPPPPYEELSQLQAPPTVLTPPSTIASLPSPQPPPPLHITLPSPEQSEPDSTTATLRQFRKRCMASCTIAATAAAAASAAAATTIATTTTATSATAAAAAAATTLLTAASPSPSSSPSSSTMEPTATVQLGKLRSSHPCVVCEKRFTNIIALRKHQQLAHDSQTTMPWVCSICKRGYRKRTDMDNHMKSHEPKGRPYECNECWVRFPEFKQLAMHKFTVHELIKPHTCDECGKQFGTESALKTHIKFHGERGFECDECEEAFAYIKDLRKHRRTHNTELFYKCDYCPRTFLHFTSYNAHINTHLPLGVFLNDKMPSSVSSKSDNPLTPLMATNEDSSLPLTPLSNCNGNSGSGSGEDCPSSVETMVESSGALAPSLDMIADTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-