Dcol004769.1
Basic Information
- Insect
- Drosophila colorata
- Gene Symbol
- -
- Assembly
- GCA_035041545.1
- Location
- JAWNLD010000233.1:6185998-6191449[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0027 0.18 12.3 0.4 1 23 139 161 139 161 0.98 2 14 0.00014 0.009 16.4 1.3 1 23 389 411 389 411 0.98 3 14 5.7 3.7e+02 1.9 0.4 1 23 417 440 417 440 0.90 4 14 1.1 73 4.1 0.1 1 23 463 486 463 486 0.93 5 14 0.0012 0.079 13.4 1.9 3 23 745 765 744 765 0.92 6 14 0.049 3.2 8.4 1.4 1 23 771 794 771 794 0.98 7 14 0.48 31 5.2 1.6 2 23 831 852 830 853 0.90 8 14 0.0031 0.2 12.1 0.7 1 23 874 897 874 897 0.97 9 14 0.016 1 9.9 0.4 1 23 1130 1153 1130 1153 0.91 10 14 0.0012 0.077 13.4 4.0 1 23 1166 1188 1166 1188 0.98 11 14 0.00016 0.01 16.2 0.1 2 23 1194 1216 1193 1216 0.96 12 14 0.0008 0.051 14.0 2.8 3 23 1224 1247 1222 1247 0.88 13 14 0.067 4.3 7.9 0.1 1 23 1252 1274 1252 1274 0.96 14 14 0.1 6.6 7.4 1.5 1 23 1280 1303 1280 1303 0.95
Sequence Information
- Coding Sequence
- ATGGCGCACAAGCGTGTGAAAACGGAGGTGAATTATAAATTTGCGTGTCGCTGTTGCCTCAAATCCGAGGCCGAGTTCTTCAAGCTGGACTCGCTCATCGAGTGCGGAATGGGCGACGACAACGATGCGGCCGCCATGCAAAAAATACCCCTAATacgtttgctgctgttttgcATGCGTACCGAGAATCTGCCCGAGCTGCCGCAATACATTTGCGTCGAGTGCAGCAAAAGTCTGCaaattgcctatttattcATCCAGAACGGGCTGCGCGCCCACGAGATACTCTGTCGCAAGCTATGCCCCGGCCAGGTGAGGTTCACGACGCGCTCGAACGGCCAGCTGACACAAGAGGGTGAGGACGCGACGCTAAGCAGACACGGGGAGCTGAAGCCAACAAAGGCCGCTCTGCGACACGAATGCAAAGTTTGCGGTGCTATTATCTATAATCGCCTGGAGCTCAAGCAGCACATACGCATGCACACAGAGTCGTCGCGACATCAGTGCAAATTGTGCAATTTCGTCACGCTCAAGCATCGTCAGCTGCCGGAGCATTATCGCAAGGCGCACGGCCTCACAGCGGCCCAAATTGAGCATCAGCTCAAAATACGCCGATCCATGCAGGCggcagcaaatgcaacaacagtaaaatcaacaacagctgtgacagcaacaacgactgCTGCTGCGGACGAAAATCAGGTGAAGGTGTGCACGCTTGAGGATATGGAGCTGCTGATACCCACCGTGCTCACGCCGGAGGACTTTTCGCACCCACAATTGGATGCGGAACAATTGCGTGATATTGAGCAACAATTGGCACACTCGCTGCCCATCCCACAGTCCAGTTCAACGTACGCTGCAGAACCAACGATAGATGCTGGCGGTGGCGCAAATGTGAGCATAGGCGCCGAATTTCTGGTCATGCCCGACGGCTCCTTGCAGCAGGTGAACGATGCCGGTGTCGTGTTCGAGTACATTGACGATAGCAAGAATACGACAACCAATATGTCGCTGCAGAGCCTGTTGGGCGATTCCAAGACAGATTTAACGTATGACGCCATGGATATCGATCTGAGTCATATGGTTGTCGACAATGCGCTGCCGCAGATTAAAGTTAAGCCAAAGTCACGGCCCGCGCCAGCTTCAACGGGCGCCCTGAAGCACAAATGCAAACTGTGCCCCAAAGCATTTCCCACAGTGGCACGCCTGAAATCTCATCAATTAACGCATAGCCATTTGCCTAAATTCTATTGCGATCAGTGCGCTTATTATTCGCTGCGCAGCGCCGATCTCATCCAGCATTATACAACGGAGCACAAGTCCTGCGGCAGCGAGAGTCGAGCAAATCATTTCGATAGGCTGCCCGGCGACAGAAGTCGCGTATATTCCTGCGATATGTGCCTGTTTGAGGCACCGAGCAGCGGTCAGCTGCGTGTCCACTATGGCAGCAAGCATCTTATAGTGCCCAGTGAGGTGCAGCTGCGTCCCACCTGGACGCACGAGTCGAGAGAGCGGGATGGCAATTCGCTAGTCGACGGCACTGGCACCGCACAGCCAGATATTCCGCTGGGcatcaaatATCCGCCAATGATGTCTACGGGAGCAACAACGGAGTCAACGACTGCCATGGAGCAGCCTgggcaggcaacaacaacaaccgttGTAACACCAGGTGGAGAGATTAATGTTGTGGTTGATGCCACCTCGTTGTTCTATGCAGCGGGTGCAGTGGACCAGCTAACAACAGCTGAAggaacaacgacagcaacaacaacggcatcGACAACAAATTCAAACACATTCGGTTTATTCCCAGAGCAAACGTttggcacaacaacaatgtcgCAGGAGCCAAACGGTGTGACCTCTACAACAGCCACATCGAATCCAAATACGAGCATCTTTGGTGACATGCAGGATTTTATTGACAACACCGATGTGGCTGCCATATGCACCATACCCGCCGATGATATGCCTGTGGTCGATGGCGATGATATCGTTATtgataacaataatataagTCTGGACTTCGATGCGGAGAATCTATTCGAAGACTTTGAGGATGTTGAGGTAGGTGAAgaggatgacgatgacgaggaCGATGCCGAAAATGAAGATGAAAATGATAACAATGATGCAGCAGCCGATCAAAATCTATTGCTGACCAGCGACGATGACGATGTGGATGACTTCGATGACGAACAGTCGAAGCATCTACAGAAACCATATTGCATATATTGCAATAAGAAATTTACCAGCCAATACAAGTTTGAGAATCACATGTTTGTACATCGCGGTTTGGCGCCCTATCGCTGTGAACTGTGCACCAATCTGTACAATATGAAACGTCTGCTCATACGGCACTATAAGACGGTGCACAAGCGGATGCCCACTCGGGACATGGTGCAGGCCAAGGGCGATAAGGTATCCGTGGCGCGTACAACCATTGAAAAGATACAAGCCACTAATGACAAAACACCAATGCTAATGTGCGCCAAGTGTCCCTATGAATGCGAACTGGAAAGTGAAATGCGCAAGCATCTGAATGCGCATCACGGCATCAACGATGGCGTATCTGTGCACGCTAACGAGGTGTTCATCATACGCAAACTGCCCTATGAGTGTCCACGGTGCATTCGCTCATTCGCGGCCAAGCGCACGCTGACTCGCCATTTGCAACGCAGCCATTTGGTGGACACGATCATTGAGTTGCAGGCGCCTCAATTGACAACTAGCTCAGCGGCCACCACGACCACGTCGACGGCAACAACCACATTGCCGCTGAACGCCGGTGATGGCAataaaaccacaacaacagcaacaacaacaacactggATGCCAACATGTTGGCGCCGCAAGATGCTGAGACTGTCgacggcgatggcgatggGGATGGGGATGGAAAATGCGAAGAGAACGCGCTAGACAAGGAGACAGGATGCAAAACGGAAAACTTAGAAACATATATCAAAaccgaaacaacaacaagaacaaaaactcAAGAAACaaacgcagcagcaaccaccGAAACAGAAGCTgatccagcaacagcagaaacaacagaagctgcaacaataacaaaaacagatgctgcaccaacaacaacaacagcaataacaacagctgAAAATAcaccaacaacatcagcagcaacaacaaccgcatGCTCTACGCTCTTTCCAACGCCCACGCCATTTGACTTTGATCTTGACTTTATTGGCAATGGCGCAcacgctgccacgcccattaaGAACAATAGCGACAGCTTCCACATTGCATCGAACACCAGTCATCTGCTAAATGGCAGCGATAAGCTGCTGACGGCAGCGTTGGAGCCATCGCCAGTCAAGGATTTACGCACACGCCTGCCGCGAACACCCATCTTCGTGTGCAAGCAATGCAATCAGACCTTCGACGAGCTCGGCAAGCTGTTGCAGCACGAACTGGAGCAACATTCCAGCGGCGTTGTGTCGCCGCGCAGCAGCTACCAGCATCAGTGCACGATCTGCAAAACCACATATCGCACCGTAATGCTACTCAACTATCATATGAAACGGCATGCGCCGGTTAAAATTCCGTGTAAACAGTGCTCCAAGGAGTTTGAGGAGAGTTCGGACTTGGAACAGCATATACAGTCCGAGCATGCCACCAATATGCCCCTCGTATGCGGCGTGGATGGCTGCACGAAGACATTCAACTATAAACATCATCTGAAGCGTCATCAGACCGCCTCCCATACGCCGGTTCAGTACATTTGTCCGGAGTGCGGACGCGATATGCTAACCAGCCTGCAGCTGAGGAATCACATGTCCATTCACAAGGGCACACATTCGTACAAGTGTCCGAAATGTGTGCGTACTTATTTGCGACGCAAACCattccGAAGACATGCGCTACGTGAGCACAAGTGGGAGCTGACCGAGGAGgaaattgataaaatatattgcGTGAATGATACATCGCCGTCAATCACGTTGCGTGGACGAAGATCGGCAAAGGTTGGGCAAGAGCAGTCTGACTAG
- Protein Sequence
- MAHKRVKTEVNYKFACRCCLKSEAEFFKLDSLIECGMGDDNDAAAMQKIPLIRLLLFCMRTENLPELPQYICVECSKSLQIAYLFIQNGLRAHEILCRKLCPGQVRFTTRSNGQLTQEGEDATLSRHGELKPTKAALRHECKVCGAIIYNRLELKQHIRMHTESSRHQCKLCNFVTLKHRQLPEHYRKAHGLTAAQIEHQLKIRRSMQAAANATTVKSTTAVTATTTAAADENQVKVCTLEDMELLIPTVLTPEDFSHPQLDAEQLRDIEQQLAHSLPIPQSSSTYAAEPTIDAGGGANVSIGAEFLVMPDGSLQQVNDAGVVFEYIDDSKNTTTNMSLQSLLGDSKTDLTYDAMDIDLSHMVVDNALPQIKVKPKSRPAPASTGALKHKCKLCPKAFPTVARLKSHQLTHSHLPKFYCDQCAYYSLRSADLIQHYTTEHKSCGSESRANHFDRLPGDRSRVYSCDMCLFEAPSSGQLRVHYGSKHLIVPSEVQLRPTWTHESRERDGNSLVDGTGTAQPDIPLGIKYPPMMSTGATTESTTAMEQPGQATTTTVVTPGGEINVVVDATSLFYAAGAVDQLTTAEGTTTATTTASTTNSNTFGLFPEQTFGTTTMSQEPNGVTSTTATSNPNTSIFGDMQDFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDAENLFEDFEDVEVGEEDDDDEDDAENEDENDNNDAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKVSVARTTIEKIQATNDKTPMLMCAKCPYECELESEMRKHLNAHHGINDGVSVHANEVFIIRKLPYECPRCIRSFAAKRTLTRHLQRSHLVDTIIELQAPQLTTSSAATTTTSTATTTLPLNAGDGNKTTTTATTTTLDANMLAPQDAETVDGDGDGDGDGKCEENALDKETGCKTENLETYIKTETTTRTKTQETNAAATTETEADPATAETTEAATITKTDAAPTTTTAITTAENTPTTSAATTTACSTLFPTPTPFDFDLDFIGNGAHAATPIKNNSDSFHIASNTSHLLNGSDKLLTAALEPSPVKDLRTRLPRTPIFVCKQCNQTFDELGKLLQHELEQHSSGVVSPRSSYQHQCTICKTTYRTVMLLNYHMKRHAPVKIPCKQCSKEFEESSDLEQHIQSEHATNMPLVCGVDGCTKTFNYKHHLKRHQTASHTPVQYICPECGRDMLTSLQLRNHMSIHKGTHSYKCPKCVRTYLRRKPFRRHALREHKWELTEEEIDKIYCVNDTSPSITLRGRRSAKVGQEQSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -