Basic Information

Insect: Drosophila colorata
Gene Symbol: -
Assembly: GCA_035041545.1
Location: JAWNLD010000490.1:19415642-19421322[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1e-07 7e-06 26.2 1.8 2 23 146 167 146 167 0.97

2 9 3e-07 2e-05 24.8 1.5 1 23 173 195 173 195 0.98

3 9 1.3e-07 8.2e-06 25.9 1.1 1 23 201 223 201 223 0.98

4 9 7.7e-07 5e-05 23.5 0.7 1 23 229 253 229 254 0.95

5 9 0.00012 0.0077 16.6 3.0 1 23 259 281 259 281 0.97

6 9 0.00042 0.027 14.9 3.3 1 23 287 310 287 310 0.98

7 9 0.00018 0.012 16.0 2.7 1 23 316 338 316 338 0.99

8 9 4.3e-06 0.00028 21.1 0.8 1 23 343 365 343 365 0.98

9 9 0.0059 0.38 11.3 0.3 3 23 373 396 371 396 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1e-07	7e-06	26.2	1.8	2	23	146	167	146	167	0.97
2	9	3e-07	2e-05	24.8	1.5	1	23	173	195	173	195	0.98
3	9	1.3e-07	8.2e-06	25.9	1.1	1	23	201	223	201	223	0.98
4	9	7.7e-07	5e-05	23.5	0.7	1	23	229	253	229	254	0.95
5	9	0.00012	0.0077	16.6	3.0	1	23	259	281	259	281	0.97
6	9	0.00042	0.027	14.9	3.3	1	23	287	310	287	310	0.98
7	9	0.00018	0.012	16.0	2.7	1	23	316	338	316	338	0.99
8	9	4.3e-06	0.00028	21.1	0.8	1	23	343	365	343	365	0.98
9	9	0.0059	0.38	11.3	0.3	3	23	373	396	371	396	0.94

Sequence Information

Coding Sequence: ATGGACACCATTTGTAGGCTGTGCTTTCAGACAGCAACGTTATTCCAAGTGCCCGGCTATAGCATACCCACGTGCGTGCGCTGCTCGGAGCAGTTGACAAACAACTCGAACTTCCATCAAGCCGTGCGCGTGCAAGACGGCGCAGCAGCTTCTGTGGCGGCCGCCGCAgtagccgctgctgctgctgcatcgaCGGCGtccggcgacggcgacgcggTGGCGGCCCAGCTGACGAACGGCAGCGCTGTGGCCGCtgtgctgcagttgcagcaacagcagcagcagcagcaacaacagcagcagcagcaacaacaacagcagcagcaacaacaacaacagcagcaacaacaacaattgcaatcaTCAAGTTCTTCCGAGAATCTACAATCGCAGGACGATTCTGAAGATGTGGATCTGATATTCAACGAGGAGGGCTCCTGCCCGCTGTGCAACAAGACCTTCTCGCGCAAATCCTCGCTCATGACGCACATACGAAATCACTCGGCTGAGCGCAAGTTTGTGTGCAGCTACTGCCACAAAGGCTTCACGCAGGCCGCCAATTTGCGCAATCACGAgcgcatacacacaaatgatcggccATATCAGTGCGTGGACTGCGGCAAGACCTTCACCCAAAtcacaaatttaaacaatcaTCGACGTCTGCACACCGGCGAGCGGCCCTTTGTATGCAATGAGCCCGAATGCGGGCGCAGCTTCGCCCAGGTGACCAATTTGAATAATCACATGAAGTCGCATCACAAGGTGCAGCAGTATTGCTGCAATGTGTGCAGCAAGAAGTTCACGCAGGTCACCTCACTGAATCAGCATCTGCAGGCACATGCCGGCGTCACCGGCTACTATTGCCCGCGCTGTCCGGAGAAGAACTTCAAGCTGCAGTCCCAGCTGCACACGCACATGAAGACGCACGGATTGGCCTTTCCCTACGAGTGCAGCAAGTGCGACGAGAAGTTTCTGCAGCAGTCGCATCTTGATCAGCATCTGAAGATGCACGATGAGTTCAAATTCAAGTGCGATATATGCCCCAGCAGCTTTAACCAGGAGTCGTTGCTCAAGAAACACGTGCAGCGCCATGTCGAGGGTCGCTATCTGAACTGCCCGGTGGCCAATTGTGCCGAATCGTTTGCGGTGCGACAGCATCTATCCAAACATTTGCTCACCAACCACTCACATCACGAGCTGCCGCCGCCGAAACGATCCAAAAAGACGATCACGCTGCAGTCGCCGCAACAGCCGCTGGCAATGATCGGACAGCCCCTCTCGCTGCAGCACACGACGGGGCAGCGTGGCAGACCGcccaaaaacaagaacaagacCTCACTGGCAGCCACGGCCATCAAGATTGAGATCAATGAGCCGTTGCACAGCCAGCACATCatcagcagcgccagcggcctCTCCATACAGCAGCAGATCAATCAACAtatgcagcagcaggcgcagcagcaacaacagcaacagcatctgcATCTGCCCATGGGACAGGCGGTCAAGGCGCGCTTTATACCCACTAAATAG
Protein Sequence: MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNSNFHQAVRVQDGAAASVAAAAVAAAAAASTASGDGDAVAAQLTNGSAVAAVLQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQSSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCSYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVCSKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGLAFPYECSKCDEKFLQQSHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLNCPVANCAESFAVRQHLSKHLLTNHSHHELPPPKRSKKTITLQSPQQPLAMIGQPLSLQHTTGQRGRPPKNKNKTSLAATAIKIEINEPLHSQHIISSASGLSIQQQINQHMQQQAQQQQQQQHLHLPMGQAVKARFIPTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00533229;
90% Identity: iTF_00572743;
80% Identity: -