Basic Information

Insect: Drosophila colorata
Gene Symbol: kipf
Assembly: GCA_035041545.1
Location: JAWNLD010000013.1:2009933-2011639[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.5e-05 0.0016 18.7 2.8 1 23 255 277 255 277 0.98

2 11 0.00065 0.042 14.3 0.5 1 23 283 305 283 305 0.98

3 11 1.3e-05 0.00083 19.6 1.3 1 23 311 333 311 333 0.98

4 11 1.3e-06 8.4e-05 22.8 4.8 1 23 339 361 339 361 0.99

5 11 2.3e-05 0.0015 18.9 0.9 1 20 367 386 367 389 0.95

6 11 9.6e-06 0.00062 20.0 1.2 1 20 395 414 395 417 0.95

7 11 3.1e-07 2e-05 24.7 0.9 1 23 423 445 423 445 0.99

8 11 1.9e-06 0.00012 22.2 2.8 2 23 452 473 451 473 0.98

9 11 1.8e-05 0.0012 19.1 0.2 1 23 479 501 479 501 0.98

10 11 6.6e-08 4.3e-06 26.8 0.3 1 23 507 529 507 529 0.96

11 11 3.4e-06 0.00022 21.5 3.1 1 23 535 557 535 557 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.5e-05	0.0016	18.7	2.8	1	23	255	277	255	277	0.98
2	11	0.00065	0.042	14.3	0.5	1	23	283	305	283	305	0.98
3	11	1.3e-05	0.00083	19.6	1.3	1	23	311	333	311	333	0.98
4	11	1.3e-06	8.4e-05	22.8	4.8	1	23	339	361	339	361	0.99
5	11	2.3e-05	0.0015	18.9	0.9	1	20	367	386	367	389	0.95
6	11	9.6e-06	0.00062	20.0	1.2	1	20	395	414	395	417	0.95
7	11	3.1e-07	2e-05	24.7	0.9	1	23	423	445	423	445	0.99
8	11	1.9e-06	0.00012	22.2	2.8	2	23	452	473	451	473	0.98
9	11	1.8e-05	0.0012	19.1	0.2	1	23	479	501	479	501	0.98
10	11	6.6e-08	4.3e-06	26.8	0.3	1	23	507	529	507	529	0.96
11	11	3.4e-06	0.00022	21.5	3.1	1	23	535	557	535	557	0.98

Sequence Information

Coding Sequence: ATGGAAGAATTTTGCTGCATTTGCACTATTAGCTCCTGCAGCCTGGTGGACATATTTGCCGGCCAACCCAGTCTGGCGGAGATGTTGAACGCGTGCGCCGCCTGCCAAATAAATCGCACGGATGCACTGCCTCAGCGCATGTGTCTGTCCTGCGCGCTGGCCGCCCAAGACGCGTACAGACTGAAGCGCGACGGCCTTTGGTCAGCTGAGATGGGGCCGAAGCTGGAAGCAGTGTGCCGGGTGTGTGGGAGCAGCTCCAATACGCTAGTGGACATAGTGGCCAAGCGGCAGCAGGCGTTGGGGGAACCTAGCCTGGCAGAAATGCTGAACGAGTGCGTCGGCCATCAAGCCAAAAACGGCCAAAAAGCAAATGATCCGCCAATGATTTGCCTGTCCTGCGTGCTGGCCGTGCAGAACGCATTCAGATTCAAGCGACGCTGCGAGCAGCGTCATCAGCAACTGCTTGGCGAAGATGACATCAAGACTGAGGGCACGGAATGCGAAGAGGAGTACGTTCTGCCGGATGGGAATATAAACGAAAGCGGGCAGCGACCGGACTATTATGTGAAGACAGAAATCGAGGAAACGCCACAAAAGTTCGTGCCCGAGGAGAGGCACATCAAGCTGGAGCAGGAGGAAGAGGCAACCGTTTCAGGCGAATCTGACACCgacagcagctacagcagcagcagcagcagcagcagcagtagcagcagcaccTCACAGCAACGTCAACCGAGCCCTAATCCCAGCCAGAAACAACATGTCTGCGACACGTGCGGCAAGGCCTATGCCCGAATTGGACACCTGCATGTACACCAGCGCATGCACTCCGGCGAGCGTCCGTACAAGTGTCTCGAGTGCCCGAACGCATTCACCAGCCGCAAGGTTCTAAAGGATCACAGTCGCATTCATACGGGCGAGCGTCCGTATCATTGTGCCCAGTGTCCAAAGGCATTCGGTCGGAATGGATCGCTGCTGAAGCACATGTTCACGCACACGGGTGAGCGGCCATTCAAGTGCGTGCACTGTCCGAAGGCGTTCTGCCAGAGCGGCCATCTAAGGATCCACATACGCATCCACACCGGAGAGCTGCCGTACAAGTGTACGCATTGTCCGCGCGCGTTCGCCCGCAAGGAATACCTGCGTGATCATGTGCCCCTGCACACCGGCGAAAGTCCCTACAAGTGTCCGCACTGCCCCAAGCTATTTGCCCGCAGGAAGAATCTGAAGATCCATCTGCCGCTGCACACGGGCCAACATGCGTATCAATGTCCACACTGTGCGAAAACCTTTACCGGCAGCTCCAGTCTTCAGATACACGTACGCGTGCACACCGGCGAGCGACCCAACCAGTGTCCGCACTGCCCGAAGGCCTTCAATCAGCGCGTCTGCCTGCAGAATCACATTCGGGTGCACACCGGCGAACGGCCCTTCAAGTGCGCCCAGTGCCCGAAGACGTTCGCCAGCAATGGCGGCCTCTACAATCACGGCCGGGTGCATACGGGCGAACGTCCGTTCCAGTGTCCCCAGTGTCCAAAGAGCTTTCCGCGCAGCGAGAATCTGCGCAAGCACATCGGACTCCACTCCGCGGATCGGCAGTACAAGTGCAACCACTGTCCAAAGGACTTTGCCCGCCGCGAGAGCCTGGCCAGGCATCATCTGATTCATGCGCAAAGCAAAAAGAGCCAGGCGCAAAcagaataa
Protein Sequence: MEEFCCICTISSCSLVDIFAGQPSLAEMLNACAACQINRTDALPQRMCLSCALAAQDAYRLKRDGLWSAEMGPKLEAVCRVCGSSSNTLVDIVAKRQQALGEPSLAEMLNECVGHQAKNGQKANDPPMICLSCVLAVQNAFRFKRRCEQRHQQLLGEDDIKTEGTECEEEYVLPDGNINESGQRPDYYVKTEIEETPQKFVPEERHIKLEQEEEATVSGESDTDSSYSSSSSSSSSSSSTSQQRQPSPNPSQKQHVCDTCGKAYARIGHLHVHQRMHSGERPYKCLECPNAFTSRKVLKDHSRIHTGERPYHCAQCPKAFGRNGSLLKHMFTHTGERPFKCVHCPKAFCQSGHLRIHIRIHTGELPYKCTHCPRAFARKEYLRDHVPLHTGESPYKCPHCPKLFARRKNLKIHLPLHTGQHAYQCPHCAKTFTGSSSLQIHVRVHTGERPNQCPHCPKAFNQRVCLQNHIRVHTGERPFKCAQCPKTFASNGGLYNHGRVHTGERPFQCPQCPKSFPRSENLRKHIGLHSADRQYKCNHCPKDFARRESLARHHLIHAQSKKSQAQTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -