Basic Information

Insect: Drosophila carrolli
Gene Symbol: salm
Assembly: GCA_018152295.1
Location: JAECXJ010000159.1:4262095-4269901[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2e-06 0.00015 22.0 1.7 1 23 333 355 333 355 0.98

2 8 3.2e-06 0.00024 21.4 1.1 1 23 361 383 361 383 0.98

3 8 2 1.5e+02 3.1 2.5 5 23 601 619 598 619 0.84

4 8 3e-08 2.2e-06 27.8 0.2 1 23 625 647 625 647 0.98

5 8 0.00089 0.067 13.7 0.9 1 23 657 679 657 679 0.98

6 8 0.031 2.3 8.8 0.0 2 23 891 913 891 913 0.96

7 8 9.6e-06 0.00073 19.8 5.0 1 23 1058 1080 1058 1080 0.96

8 8 7.7e-08 5.8e-06 26.5 0.7 1 23 1086 1108 1086 1108 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2e-06	0.00015	22.0	1.7	1	23	333	355	333	355	0.98
2	8	3.2e-06	0.00024	21.4	1.1	1	23	361	383	361	383	0.98
3	8	2	1.5e+02	3.1	2.5	5	23	601	619	598	619	0.84
4	8	3e-08	2.2e-06	27.8	0.2	1	23	625	647	625	647	0.98
5	8	0.00089	0.067	13.7	0.9	1	23	657	679	657	679	0.98
6	8	0.031	2.3	8.8	0.0	2	23	891	913	891	913	0.96
7	8	9.6e-06	0.00073	19.8	5.0	1	23	1058	1080	1058	1080	0.96
8	8	7.7e-08	5.8e-06	26.5	0.7	1	23	1086	1108	1086	1108	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAACCGCATCAATTACCGTGGGACTGGCAGCACCAGGAGCGGCAGCGGGGAGCGGGAAAGGGACCGGGATCGGGACAGGGACCGGGATCGGGACAGGGATAGGGAGAGGGAGAGGGATAGAGACGCACTGCTGGCCAAGGAACTGGATGCGGACAGCAACAACAATGGCACCGAGCCGCAAATGGAAACGGAGGCGGTTCCAGAGTCCGACACGGAACGGGAGTTGGCCGAGGAGCACGGCGAGGATCAGGAGCCGGAGAACAGCAACGAGGCCCTGGACCTCTCGCTGATCTCGTCCAGCGGCCGGGGATCGCTGCCGGGCAGTGGTCACGTCTCGCTGGAGGCCCTACAACATACCAAAGTGGCGGTGGCCCAGTTCGCGGCTTCGGCGATGGCCGGTGCAGGTGGCCACCAGTCGCCCGACCTGGCCATGGTGCAGTCCACCATCTTCAATGTGCAGCGGCAGCATCTGATGCAGCTGCAGCTCATCCAGCACCTGCAGAGTCAATTGAAAAGGGCCGAGGCCGCCGCCTTGGGCAGGCCGACCCACAGCGACGAGGAGGAGGACGAGCCAGAGGCCAAGAAGCAGCCAGCGAATGGACTGAAGGAGGAGCAGGAGCAGGAACAGGATCTGGATCAGGAGCAAGACTTGGAGCAGGATCAGGACCGGGATCAGGAGCAGGAGCGGCGGCGCGAGGAGAGTTCAAAGACTGACAAGAGGGGAACTGAGGAGAGAAAGGCGGAGCCGGAGGACTACCAAACCATGATGTGCGACATCAGCTCGAGCCTGGCCTCGAGCATCATCACCAACCACGATCCCCCGCCAGCTCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGCAGAACGGAGGAGGTCCTGGACTCGGCCTCCCAGAGTCTACACGCCGCCCAGATGCAGGAGGAGTACTCGGAGTACGCCTCCAAGGAGGCCCAAAGTCGCGGTGAGATCTTCAAGCACCGCTGCAAGTACTGCGGGAAGATCTTCGGCAGCTACTCGGCCCTCCAGATTCACCTGCGATCCCACACCGGTGAGCGGCCCTTCGTTTGCAACGTTTGCGGCAGCAAGTTCACCACGAAGGGCAATCTGAAGGTCCACTACCAACGGCACACGCAGATCTTTCCGCCCATGCTGCTGCCCCCAGGTGTGGCGCCCAACGTGGGGCATTCGGGGCAGGGTCAAGTCCAGGCCGACCAGTATCCCATTCGCCTGCCCTTCGTGCCTCCAGTGGCACCGGCGGGAGCTCAGGATCAGGTCCAGCACCAAGTGGAGGAGCCGGAGGAAGTGAGGCAGGAGGTTCCAGCCCAGCAGGCCGAGGATCTCAGTAAGCCAGTGGTCAAGGAGAAGGAGAAGGAGAAGTCCCACTCCCCCGTGGAGCGTGTCAAGACGCCCAAGGAGGCTAAGCCAGACGTTCAACAGCCGTCACCGGAGAAGCCCGAAAAGGAGGTCACCAAACCAGTGGTGACCCCGTCACGACGCAACGGTTCTGTTCGTAAGCGACAGACAAGCAGTGCTGGGAGTCCGCCCCAGGAGGACAGGGAACGGGATCTCGCCGAGCACCTGCACATAGCCAAGCTGGTGAGACGCTCCTCCGCCAGCAGAGAATCGCAGCCGGCGGAGTACTCGCTCGCCCAAATGGAGCGCATCATCGACAAGTCGTGGGAGGACCTGATTGAGATCGACAAAACCTCGGAGACATCGAAGCTGCAGCAGCTGGTGGACAACATCGAGAACAAGCTGACCGATCCCAACCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGTCGCAGCTCCCTGCAGATGCACATCCGCACCCACACGGGCGAGCGTCCCTTCCGCTGCAAGATCTGCGGCAGGGCCTTCGCCACGAAGGGGAACCTGAAGGCCCACATGAGCATACACAAGATCAAGCCGCCGATGAGGAGCCAGTTCAAGTGTCCCGTGTGCCACCAGAAGTTCTCCAACGGCATCATCCTGCAGCAGCACATTCGCATCCACACCATGGACGATGGCAGCGGTGGCCAGGGAGCTCCTCCGGGCAATCCTGGCGAGGCCGAGCGGTTGGGCATCGAGGATCAGAACTCGAACAAGTCGATGGGCACTTCGGACACCCTGGACTTCTCCACCACCATTTCGGACCACTCGGGCCAGAGATCCGAGTCGTCGCAAGGCGGGGACTTCGATGAGTTCATGACCATGGACAGCACTGACGACTCACGGGACAACTCCAGTGCGGCCACAGCCACGCCCCATCCGCTGGAGAGGGACAGGGAGAAGGATCGGGAACGGGAACGGGATCGAAGGATTCCCAACGATGGCTCCGACGAGAGATCTCATTCCAATCCCGATCTGGCCGGAGGTCGCAGCGAGAGTGGGGAAATGCCCGCCATGGATCTCTCCTCGCCCTCCTCAGCCTCCGGTCGCATCTTCGGATCTGGACTGGCCAATGGATCTGCCGGTGGAGGATCGGGGGGCGGTGGCCTTCCCATGCTTGGAATGCCCATGCCCCCCAATCTGCTGCTCATGGCAGCCGCCCGCGAGGAAATGCACGCTCTAGGTCACGCTCACGCCAAATTCCCCCTGCTGCCCTTCGGTCCTCTTGGATTCATGGGTCTGCACCCGCCCCCCAATGTGTGCAATCTCTGCTTCAAGATGCTGCCCAGCCTGGCCGCCCTGGAGGCCCATCTGCAGAGCGAACATGCCAAAGAACCGGCGCCGGGCCACGCCCTCCGCCCCCACTGCAGTGACGCTGGATCGCCGTACGGTGCCAAGCTCACTCTCAATCCAAATCTGTTTGCAAAGAAGCCGCCTTCGTCGTCGTCGTCGTCATCGGGTGACAAGTTGCCGGAGGCATCATCCCTGCCCTTTCCCCCCGAAGTTCCCCCGGCGACCTCCATCAAAGAAGACCCCGACCAGGAGCAGTTGGCGGTGGACGAGGGTGGATCGGCTGGAGAAGGATCGGGCAATGGAGCTGGCTCTAGTTATCCACAGGAGGCAGGAGATGCCGAGCAGTCCCTGATGAAGATGCAGCTCCATGCCCATCGTTTTCCGGCCAGTCCGCTCGACTTTCAGCAGGCTCTGATGTCCGCAGGTCCTCCGACCTCCAGCTTGGATCCTCCGGTGAACAACAAGCACTTCTGCCACGTCTGCCGCAGGAACTTCAGCTCGAGTTCCGCCCTCCAGATCCACATGCGCACCCACACGGGCGACAAGCCCTTCCAGTGCAATGTGTGCCAGAAGGCCTTCACCACGAAGGGGAACCTCAAGGTGCATATGGGCACCCACATGTGGACGAACCCCACTTCGCGGCGAGGTCGTCGCATGTCCCTGGAGCTTCCCATGCGACCTGGTCCGAACTCGGGAGCTGGTCATCCGGGATCGAATGCTGAACAGGAGTTCATGCAGCGTCGACCGGAGCTCTTCTTTCCTTACCTGCCGCCCTTCTTCAACGGATTGCCGCCTAAGCCTGGTGAACTGAGTCCCGGCGCCTTTCCCAATATTCCCCCGCCGCCCTTCGCCAACGGCGGGAAGTATCCCTATCCGCCCGGACTCCTGGGATTCCCGGGCTTCCTGGCCCAGCATCCCTACAGCATGGAGCGGCGGAGCAGCAGCAAGTCGCCCACGCCGGAGCCGGCCCAGAGTCCTTCGCTGAGGGAGGACGAGGGGTCCGGCAGCATTTGGCATCCACTGAGTCGCATCAAGGTGGAGAGCAATCCGAACGAGGCCTTGGGCGGCTTCAACGAGCAGGAGGATCAGGCGGAGGCGGATGTGGAGGCCACAGGAGGGGACATCGAGGAGTCGGAGTCCGGAGATGCGGAGAAGTAA
Protein Sequence: MCSIFRNRINYRGTGSTRSGSGERERDRDRDRDRDRDRDRERERDRDALLAKELDADSNNNGTEPQMETEAVPESDTERELAEEHGEDQEPENSNEALDLSLISSSGRGSLPGSGHVSLEALQHTKVAVAQFAASAMAGAGGHQSPDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAEAAALGRPTHSDEEEDEPEAKKQPANGLKEEQEQEQDLDQEQDLEQDQDRDQEQERRREESSKTDKRGTEERKAEPEDYQTMMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFVCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVAPNVGHSGQGQVQADQYPIRLPFVPPVAPAGAQDQVQHQVEEPEEVRQEVPAQQAEDLSKPVVKEKEKEKSHSPVERVKTPKEAKPDVQQPSPEKPEKEVTKPVVTPSRRNGSVRKRQTSSAGSPPQEDRERDLAEHLHIAKLVRRSSASRESQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGAPPGNPGEAERLGIEDQNSNKSMGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPLERDREKDRERERDRRIPNDGSDERSHSNPDLAGGRSESGEMPAMDLSSPSSASGRIFGSGLANGSAGGGSGGGGLPMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALEAHLQSEHAKEPAPGHALRPHCSDAGSPYGAKLTLNPNLFAKKPPSSSSSSSGDKLPEASSLPFPPEVPPATSIKEDPDQEQLAVDEGGSAGEGSGNGAGSSYPQEAGDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPNSGAGHPGSNAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFPNIPPPPFANGGKYPYPPGLLGFPGFLAQHPYSMERRSSSKSPTPEPAQSPSLREDEGSGSIWHPLSRIKVESNPNEALGGFNEQEDQAEADVEATGGDIEESESGDAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527496;
90% Identity: iTF_00512161;
80% Identity: -