Basic Information

Insect: Drosophila carrolli
Gene Symbol: -
Assembly: GCA_018152295.1
Location: JAECXJ010000170.1:9493475-9495417[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.9 1.5e+02 3.2 1.5 1 20 123 142 123 143 0.90

2 10 0.0027 0.2 12.2 0.6 2 23 184 205 183 205 0.96

3 10 0.00021 0.016 15.7 0.9 1 23 231 252 231 252 0.98

4 10 0.0018 0.13 12.7 0.4 2 23 260 281 259 281 0.96

5 10 8.8e-05 0.0066 16.8 0.6 1 23 306 328 306 328 0.98

6 10 7.2e-08 5.4e-06 26.5 0.9 1 23 334 356 334 356 0.99

7 10 0.00099 0.075 13.5 5.5 1 23 362 384 362 384 0.98

8 10 9.8e-07 7.4e-05 23.0 0.8 1 23 390 412 390 412 0.98

9 10 7.5e-06 0.00057 20.2 0.3 1 23 416 438 416 438 0.99

10 10 0.014 1.1 9.9 0.1 3 23 470 491 469 491 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.9	1.5e+02	3.2	1.5	1	20	123	142	123	143	0.90
2	10	0.0027	0.2	12.2	0.6	2	23	184	205	183	205	0.96
3	10	0.00021	0.016	15.7	0.9	1	23	231	252	231	252	0.98
4	10	0.0018	0.13	12.7	0.4	2	23	260	281	259	281	0.96
5	10	8.8e-05	0.0066	16.8	0.6	1	23	306	328	306	328	0.98
6	10	7.2e-08	5.4e-06	26.5	0.9	1	23	334	356	334	356	0.99
7	10	0.00099	0.075	13.5	5.5	1	23	362	384	362	384	0.98
8	10	9.8e-07	7.4e-05	23.0	0.8	1	23	390	412	390	412	0.98
9	10	7.5e-06	0.00057	20.2	0.3	1	23	416	438	416	438	0.99
10	10	0.014	1.1	9.9	0.1	3	23	470	491	469	491	0.96

Sequence Information

Coding Sequence: ATGTCATCGTTCAACCAGGCCGAGGAGACTAGCACGGACACCCACGTGGAAGATGAATCCTTCTCCGAAGTTGCAGAGCCCCAAGAGCTCCTCTTCTGCGAGAGCTGCGGCAACGTATACGAGGACAGCGAGGCATACGCCAGGGATCACGATAAGCAGACCGGCTCCTGCAGCGGCGTGAACGAAGAAGTGGAGTTCGTAGTGGAGGAAACCCCGGACGACGAGGTCATAACAGATTGCATTTTGGAGGAGGTTGACGACGAGGACATTGTCGAGGCGGATGTGCCGCTCTGGGAGCTGGTGGAGGAAGTTCCAGCCAACATCAAGGTGGAGCAGGACGGTGCGGAGTCCAGCCAATCCGATCGTTACTTTTGCTACGACTGCCACAGCATTTTCGAAAACCGGGGTAGTGCAGAAGAGCACGTTTGTCCGCGGGCAGAGTCAGGAGGTGGTTCCAGCCAGCAAGTCGGTGAGGCCAAAGCACCCGTCCGCCGAAAGTTGCCCGGAGTCAGTACAAGGACAGATCCCAAGAGTACATCATCCGTAATTAGCTGTGGCATCTGCAACACCGTTTTTAGTTCGGACAAGTTCCTCAAGTTTCACATGCGCATCCACGAGACTCGCGTGTCCAAGAGCATTCAGGACGCCCTTCCTGTGGGCGCCCATCAGCAGTACAGCGAACTGGATCAGTTTTACTGCGAAATTTGCAACAAGAGCTTTGATGAGAACCTCTTGACGGTCCACAAACAGATGCACCAGCAAACCACCAGCGAGATTATGTGCAGCATTTGCAACCGCAAGTTCGAGAGTGACGTGACCTATCAGATGCACCTCAAAATCCACGAGAACCCTCGCGACCCCGAACCCTCCAGCAAAACGAAGCAACGACCGAGCGTCGATAAGGAGAAACCTGGCTTTCCATGCCAGTATTGCGAGCGGGTGTTCACCCGTCCCTTCGAGAAAGTCAAGCATGAACGGGTTCACACTGGAGAGAAACCCTACAGCTGTGAAGTCTGCGGAAAGACTTTTCGCGTGTCCTATTCACTGACCCTGCACCTGCGCACGCACACCAATATTCGGCCGTATGTCTGCACGGTGTGCAACAAGCGTTTCAAATCGCATCAAGTGTACTCCCACCACCTGCGCATCCACAGCTCTGAACGGCAATTTTCCTGCGATGTTTGTCCAAAATCCTTTCGCACCTCCGTGCAGCTGTACGCCCACAAGAACACCCACACCAAGCCGTACGAGTGTGTCGTCTGCAACCGTCCCTTCTCCTCTTTGTACGCCGTCAAGAATCACATGCAGACGCACAAAGACGAAAAGAGCAAAGGAAATACAGGCGCAAGTACGACGGCCCTAGACAGCGGACAGCCTGCCAAGAGCCAAGCTGGTGGGAAGTTCTGGTGTAGCGCCTGCGGAGCTGAATATGCGCGTCTTTTTGCCCTGCGCCTGCACATGAAGTCTGCCCACGGCCTGGTGGACGATGCGGCCTTACAGCAAAAGGAACCTCCCTCCACCGCTGAAGAATCGCACGCCACAGAAGCCGAGGACTCCGAGACCGCGGTGCTGATAGCAGCCGCCGAGGCAGACGCTGCTTATATTAACGCTGTAGTAAACGATGTCGACATCGTGGGATCCGTGCCGACTTACGAGGAGTGCGTTGAGTTCGACGTAGATAACTTCCATAGCGAAGAGATCATCACGGATTGGCTTAAGTAG
Protein Sequence: MSSFNQAEETSTDTHVEDESFSEVAEPQELLFCESCGNVYEDSEAYARDHDKQTGSCSGVNEEVEFVVEETPDDEVITDCILEEVDDEDIVEADVPLWELVEEVPANIKVEQDGAESSQSDRYFCYDCHSIFENRGSAEEHVCPRAESGGGSSQQVGEAKAPVRRKLPGVSTRTDPKSTSSVISCGICNTVFSSDKFLKFHMRIHETRVSKSIQDALPVGAHQQYSELDQFYCEICNKSFDENLLTVHKQMHQQTTSEIMCSICNRKFESDVTYQMHLKIHENPRDPEPSSKTKQRPSVDKEKPGFPCQYCERVFTRPFEKVKHERVHTGEKPYSCEVCGKTFRVSYSLTLHLRTHTNIRPYVCTVCNKRFKSHQVYSHHLRIHSSERQFSCDVCPKSFRTSVQLYAHKNTHTKPYECVVCNRPFSSLYAVKNHMQTHKDEKSKGNTGASTTALDSGQPAKSQAGGKFWCSACGAEYARLFALRLHMKSAHGLVDDAALQQKEPPSTAEESHATEAEDSETAVLIAAAEADAAYINAVVNDVDIVGSVPTYEECVEFDVDNFHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00507754;
90% Identity: iTF_00588302;
80% Identity: -