Basic Information

Insect: Drosophila carrolli
Gene Symbol: pita
Assembly: GCA_018152295.1
Location: JAECXJ010000170.1:12630069-12632273[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.2e-05 0.0039 17.5 0.1 1 23 227 249 227 249 0.97

2 10 2e-05 0.0015 18.8 1.7 1 23 255 277 255 277 0.94

3 10 4.7e-08 3.6e-06 27.1 2.8 1 23 283 305 283 305 0.99

4 10 0.002 0.15 12.6 0.1 3 23 313 333 311 333 0.95

5 10 9.4e-05 0.0071 16.7 0.3 1 23 339 361 339 361 0.95

6 10 5.6e-06 0.00043 20.6 1.1 1 23 367 389 367 389 0.94

7 10 0.0011 0.081 13.4 4.2 1 23 395 417 395 417 0.98

8 10 0.0001 0.0079 16.6 0.4 1 23 425 447 425 447 0.96

9 10 0.37 28 5.4 0.0 2 23 453 474 452 474 0.95

10 10 0.075 5.7 7.6 2.6 1 23 480 503 480 503 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.2e-05	0.0039	17.5	0.1	1	23	227	249	227	249	0.97
2	10	2e-05	0.0015	18.8	1.7	1	23	255	277	255	277	0.94
3	10	4.7e-08	3.6e-06	27.1	2.8	1	23	283	305	283	305	0.99
4	10	0.002	0.15	12.6	0.1	3	23	313	333	311	333	0.95
5	10	9.4e-05	0.0071	16.7	0.3	1	23	339	361	339	361	0.95
6	10	5.6e-06	0.00043	20.6	1.1	1	23	367	389	367	389	0.94
7	10	0.0011	0.081	13.4	4.2	1	23	395	417	395	417	0.98
8	10	0.0001	0.0079	16.6	0.4	1	23	425	447	425	447	0.96
9	10	0.37	28	5.4	0.0	2	23	453	474	452	474	0.95
10	10	0.075	5.7	7.6	2.6	1	23	480	503	480	503	0.92

Sequence Information

Coding Sequence: ATGGCGGTATACGCCGGTGATGGAATGCCTGGGCTTATCTGCCTGGAATGCCGTCTGCTGTTTGAGCACTGCTACCGCTTCAAGCAGATGTGCAAGCGGGCGGAGACCCTGCTCCGGCAATATCCTTTGACCGGAAACTGGCCCTCGCCGCTGGAGAAGCCGCGTGCTCCCATGATGACGGTTGTACCCAAGAAGGTGGTAGTGATTCCAGCACCAGCAACCGAGACACCCGAGGCCCCTAAAAAGCTCCTTAACACCATGGCCAAGTCGAGCCAGGTGGTCATCGAGAATGTCCAGGTGATGGAGACCAGTTTGGTGAATCCGGTTACAGTTACCGCACCGGTGAACCGCCGATCTCATGCCTACGAGTTGAAGGTGGAGAACAACCAGGAGATTAACATGGACGATGTGCAGAACATGCTGGAGGACATGGCCCACGAACTTGAAAAGGAGTTTGAGAAAACAGCTCCCAAAAAACCCAAGCTGTTGAACAAGTCATCGATTAGGATACTAAACAAAGGACCATCTGCTCCGGTGGAGCCGCGTATTTCCACGCCCCAAGTCAAAAGGGATGAGAGTGGCAACGTGGCTGTAGTGACCGAAGTTCTGGATGCCGACATTAAACTAGATGATCAGGATGATCCAACAAAGAACGCCGAAAAGGTGGCTACCCACGTATTTCCGTGTCCCGATTGCGAGCGGTCATTTCCGCTTCAGCAGCTGCTAGAGATACATCAGCTCAATCATACGCGTTCGCGCAGTTTCCAGTGTCCCCAGTGCGAGAAAAGCTTCTTCTCGAAATACGACCTGGCCAAGCACAACTTTGTCCACACCGGTGAGCGGCCATTTAAGTGTACCATCTGCGGTAAGGCCTTTACCAGGAAGGCTCTGCTCCACCGCCACGAGCGCACCCACACGGAAATCCCCAAGATCATCTGCGTGTACTGCGAGAAGCCCTTCATATCGCGCCAGGAAATGGAGAAACACGCCGAGCGACATTTAAAGAAGCGTCCATTCCAGTGCGGCGTTTGCACAAAGTCGTTTGCCTTCAAGCAAGGATTGGAACGCCATGAGGTTATACACTCCTCCAACCTTCCCTTTCCCTGCCAACACTGCTCGAGGAGCTTTTCTACCGCCTCCAAGCTGGCTCGTCATCTCGTGGCCCACGCTGGGAAAAGAGCCTATCCCTGCAAGTACTGCCCAAAGTCGTATTTGTTGTCCCACCACCTCTCCCGGCATGTGCGCATGCACCTGCAGACTACGGACGCCATGTTCGTGTGCAGCGAATGCAAGAAGTCGTTTAACAACTACATCAGCCTGTTGGAGCACGCGAGCGTCCACGCTCATACGACCCTGAAGTGTCCAATGTGTCGGGAGCAGATCGACGATATTGACAGCGTCGAAGCCCATATGGAACAGCACAAGGGGAGTGAGCGTTTCGCTTGCGAGTTCTGCGATCACATCTTCTTGACACAGAACTGCCTGCAGAAACACATCGAGGACGATCATGTGTTGGAGATGGAGCCGTACCAAAACGATGAAGAAGGCGAAGAAAGGGAAGATAATATCGAACAAGACGAAGAAATGGAGGACGTAAAGCAGGAGGAATTTGAGGCAGAGTATTTAGAAGACGACCATCTTGATGACGACCACCTCGATGATAGCGACGAGTCCTTCACGCCACCTACTAAGCAGCGAAAGGGACCTGCACCTAAAGTAATCCAGCGCGAGTCCTCGCGCCGAACTCGCGGCCTAGGTACTCAAAAAGTCTCACCAAAGGAAGTCGTTGTGAAGAAGGAAATAAAGTCGCCACCCAAACAGGCACGCTCACTTGTAAGGAATCGCAAATCCGCAATATAA
Protein Sequence: MAVYAGDGMPGLICLECRLLFEHCYRFKQMCKRAETLLRQYPLTGNWPSPLEKPRAPMMTVVPKKVVVIPAPATETPEAPKKLLNTMAKSSQVVIENVQVMETSLVNPVTVTAPVNRRSHAYELKVENNQEINMDDVQNMLEDMAHELEKEFEKTAPKKPKLLNKSSIRILNKGPSAPVEPRISTPQVKRDESGNVAVVTEVLDADIKLDDQDDPTKNAEKVATHVFPCPDCERSFPLQQLLEIHQLNHTRSRSFQCPQCEKSFFSKYDLAKHNFVHTGERPFKCTICGKAFTRKALLHRHERTHTEIPKIICVYCEKPFISRQEMEKHAERHLKKRPFQCGVCTKSFAFKQGLERHEVIHSSNLPFPCQHCSRSFSTASKLARHLVAHAGKRAYPCKYCPKSYLLSHHLSRHVRMHLQTTDAMFVCSECKKSFNNYISLLEHASVHAHTTLKCPMCREQIDDIDSVEAHMEQHKGSERFACEFCDHIFLTQNCLQKHIEDDHVLEMEPYQNDEEGEEREDNIEQDEEMEDVKQEEFEAEYLEDDHLDDDHLDDSDESFTPPTKQRKGPAPKVIQRESSRRTRGLGTQKVSPKEVVVKKEIKSPPKQARSLVRNRKSAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00512171;
90% Identity: iTF_00512171;
80% Identity: -