Dbuz007413.1
Basic Information
- Insect
- Drosophila buzzatii
- Gene Symbol
- L
- Assembly
- GCA_035045845.1
- Location
- JAWNOS010000244.1:11392907-11404302[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1e-05 0.00081 19.9 2.9 1 23 155 177 155 177 0.98 2 17 0.36 28 5.6 6.2 1 23 183 205 183 205 0.97 3 17 1.7e-07 1.3e-05 25.5 3.2 1 23 211 233 211 233 0.99 4 17 1.3e-05 0.00099 19.6 0.4 1 23 239 261 239 261 0.99 5 17 0.014 1.1 10.1 0.2 2 23 340 364 339 364 0.93 6 17 0.00031 0.024 15.3 0.2 2 23 385 407 384 407 0.96 7 17 0.063 4.9 8.0 0.7 1 23 478 500 478 500 0.97 8 17 0.074 5.8 7.8 0.3 2 23 508 529 507 529 0.91 9 17 0.029 2.3 9.1 1.7 3 23 540 562 537 562 0.86 10 17 3.4 2.7e+02 2.6 1.0 2 23 598 620 597 620 0.95 11 17 0.0026 0.2 12.4 1.1 1 23 664 687 664 687 0.97 12 17 0.0066 0.51 11.1 1.6 2 23 861 883 860 883 0.96 13 17 0.12 9.2 7.2 0.1 1 23 889 911 889 911 0.92 14 17 0.56 44 5.0 0.4 2 23 919 940 918 940 0.93 15 17 0.32 25 5.8 1.3 1 23 1041 1063 1041 1063 0.94 16 17 0.0083 0.65 10.8 0.0 1 23 1073 1095 1073 1095 0.96 17 17 0.00023 0.018 15.7 1.2 1 23 1100 1122 1100 1122 0.97
Sequence Information
- Coding Sequence
- ATGATGGCTTTAAAGATGCTGTATCGCGGTCCCAGTTCGCGTTTAgagaatttaattgaaaagatTCAAGCGACCAAGGAGATAACTAATAACGATATGTACAGCACGCACACTTCATCGAGCTACTCGCCCAGCATCTCGGATGGCACTTTGACGCCCAActcgcagctgcagcagccgcagcagtcgcagcaggaggcgggcgaGGAGGTGGCCAAGGCGAATGGTGCTGCTGCACAGCAAacggagctggagcaggagctgaGCAAGCCAAAGCGACAGCCACAgttgcatcatcatcatcatcattttcaTCATCAGCAGGCGCTGAAAATAGCAAACAAGCTGCGCAAAATCAATAAGGATGCAAAGCTGGCTGCAGGACAAGGACAAGGACATGGCACAGCCGCCAAGTTTGATAAGTTGACAGGGGAGGGGATTAAAAGTCGAGGCGACGGCTCATATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGACTCGGCTACTTGAAGCATCACGTGCAGAGCCATGCCGAGCATTTGCCTTTCAAGTGCGAATACTGCGCGAAGCTCTTCAAGCACAAACGCTCACGAGATCGTCATAAGAAGCTGCATACCAATGAGAGGAACTACAAGTGTCCGCATTGCGAGGCGGCTTTCTCCAGAAGCGATCATTTGAAGATTCACATGAAGACGCACGACATCCAGAAGCCCTTCCAGTGCAGCATGTGCAATCGTGGCTACAACACGGCCGCCGCTCTCACCTCGCACATGCAGAAGCATAAGAAGAATGCCGCCATTCTGGCAGCTGGCGGCAATCCCAATGCGCTCAACTATAGTCCACGCTCCACGGGCTCTGCCTCGATATCGAGCAATGGCAGCTTGCATAAGCGTCGCTATGCCTTGGCTCTGGCCTCCGACAGCAGTCCCAGTCGAATGGAGTTTCCCAAGCGAGCGCGTGGCCAGCTGACGACCACGCCCACGGCCACAACaatagccacgcccacgccgcTGCTGCGCTGCAGCTACTGCCCGAAGGCGACGGAGTTCAGCAGTCTCGAGCAGCTGAACGCGCATCTGCAGAGCACACACGAGCAGCAGCCGGAACAGCAGCCAAAGGACTCCGAGGCTCAGACGAATGGCTTTCAGTTGAGCTGCGAATATTGCACGATGAAATTCGTGAACATCGCTGCGCTCTTCCAGCACATGAGAGTGACGCACTTGGATCGCTTGAGCAGTCCTAATTCCTATTACGAGCACTTTAATCGGCTCGGCTCGCCGCAGTCGAAGCTCATCAAATCGGATCTGGCGCCAGCGGAGAAGCCCGAGCAGGAGCTGCCCACAGATCTGAGCAGCAACAAGCGACGTCCGCTGACCTCGCccacccagcagcagcagcagtcggcGCCGCCGCCTCCGCCTCCTGGCATCTTCTTCTGCAATCAGTGCAACGCCGGCCTGCCGGACTTTGAGAGTTTTCGCAATCATCTGAAGAGTCACATAGCCGAGGGCATGCAGCTAATCTGTCCACACTGCGGCCTCAGTCTGCCCGAGCAGTGCGAATATGAACGCCATGTGGTTGCCCACTTTCTGATCAGCAGCTCGGAGTtcaattgctgcagcagcagctgcggcaaGTCCTATGCCAAGGCCGAGGAGCTGCATCAGCATCTGCTGGCCGAGCACGTGCAGACGATGCTGAAGTGTGTGCTCTGCTCGGAGCTCTGCGAGAATCGCATGTCGATGCAGCTGCACCTGGCCTGTGCGCACAGCCAGGAATCGAAGCTGCTGAGGTGCAGCGCCTGCCTGGAGCTCTTTCGCAACGATGCCGACTTCCATGTGCATGTGAAGACACGCCATCAGCTGGGCAATCAGGGTCTGGCCGGCAATCCACCAGCGCCAGCTAATCCGCTGCAGTGCATGTTCTGTCGCGCCGTCTGCTCGTCGGAGCTGGAGATGCATTTCCATTTGGCGGCGCATGCGCGACAATTTCGCTGCCCCAGCTGCCCGGAGACGTTCCATGTGGAGTTCCTGCTGGACAGGCATATGCAGAGCCAGCATGGCGGCATCAAGGACAAGGAATCGCCTGTGCCCGTGCCAGGTAGCATGGGTAGCTTGTATGTGAATGCGTTGCTGCCACCCTTGGCTgcggccgcagcagccgccgcagcagcaacaaatgccaacaacaacaacaacaataacaacaacaatattgaCTATAATGTCGCCTTCAAGGGCCTCTTTGGAGGCAACAATCCGCCGAGCAAGTTCTACAACAGTCCACTCCAAGTGGACACCAAGCAGACACCGCATCCAGCACTGATGTATGGCCTGAGCCAACGCTACTTGATGGAAATGTACGCGGCCAAGGCCAATTCGCCAGCGAATGCCAGCAGCGGCACAGTGGAGCTGGCCACGCCGCAGGCCGTGGCAGcgagcggcggcggcagcaacagcagcagcagcaacaacaacagctacagctgcgGCATGTGCGAGCGCCAGGATCTGCGCAGCGAGGCCGAGCTGCATTCACATCGCAAGCTCGCCCACAATCTGAAGACGGGCGTCAGTCTGCGCTGTGCCTACTGCTCGGGCAACTACAAGAGCCGGGCTGAGCTGGAGCAGCACATGAAGAGCTGCCACAACTCGAGCGGCAAGCACAAGTGTCTCATCTGCGACGAGATCTTTCCCTCGCCCGCCATTCTGGCCGAGCACAAGCTGCAGCACTCCAAGGTGGGCCAGTCGGGCAAGTGTGCCCACTGTggccagcagctggagcaTGTGGCCGCCTTTCGTGCCCACCTGGGCGAGCATGGCAACGATGGCAATCTGCCGATGGCCTGCATCTGCTGCCGCCAGACTCTGCACTCGGAATTCGAGCTGAGTTTGCATGCCAAGTTCCATACCAAATCGCCCGGTTGCAATAGCCTGCAGGAGCCCGTCTGCGCGCTGTGCCTGGAGCCGCTGCCTGGCGCCGGCGAAACTGCAAAGCTGTGCGACAAATGTTGCCGCAAGCACAATCTGAATGGCAAGCGCAAGGAGCAAGTGCAGCCAGCGGCCAtcgctgctccagctgcagctgcagctgcaattgcagccaGCGCCTATCTGGAGCATCGCTGCAATCTCTGCAAAATGATCTTGCCACACGCGCAGAAGCTGCAGGAGCATCTCGTCGAGCACACTTTCGCCGGCACCGAGCAGCGTGGCTACAATTGCTACATCTGCTCGGCTGTCTTCACGGCGCCCGCTGGCCTGCTCGCCCACATGGCGGAGCACGGCACGCGTCCATACGATTGCAACTTGTGCCCGGAGAAATTCTACTTTCGCGCCGAGCTGGAGCATCATCAGCGCGCGCACGAGCTGCGCGCTCAGCCAGCCCCGGCACGTCATCCCAAGCAGGAGGCGCACAGCTCGACGGAAAGCTCCCCGGTGACGCTCAGTCCCAGCCATGTCAAGCAGGAGCTATACGAACCGGAGCCAGCCAATTCGCCCAACGCCGCTGACCCAcccgtgcagcagcagcagcaggaggaggaggaataTATTGAGGTGGAGCAAATGCCGCAGGAGACGCAGCGAGCTGGCGAGCAGCTGAGCACCGAGCgttccagcagcagcgcctAA
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSQLQQPQQSQQEAGEEVAKANGAAAQQTELEQELSKPKRQPQLHHHHHHFHHQQALKIANKLRKINKDAKLAAGQGQGHGTAAKFDKLTGEGIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRMEFPKRARGQLTTTPTATTIATPTPLLRCSYCPKATEFSSLEQLNAHLQSTHEQQPEQQPKDSEAQTNGFQLSCEYCTMKFVNIAALFQHMRVTHLDRLSSPNSYYEHFNRLGSPQSKLIKSDLAPAEKPEQELPTDLSSNKRRPLTSPTQQQQQSAPPPPPPGIFFCNQCNAGLPDFESFRNHLKSHIAEGMQLICPHCGLSLPEQCEYERHVVAHFLISSSEFNCCSSSCGKSYAKAEELHQHLLAEHVQTMLKCVLCSELCENRMSMQLHLACAHSQESKLLRCSACLELFRNDADFHVHVKTRHQLGNQGLAGNPPAPANPLQCMFCRAVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGIKDKESPVPVPGSMGSLYVNALLPPLAAAAAAAAAATNANNNNNNNNNNIDYNVAFKGLFGGNNPPSKFYNSPLQVDTKQTPHPALMYGLSQRYLMEMYAAKANSPANASSGTVELATPQAVAASGGGSNSSSSNNNSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNYKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLGEHGNDGNLPMACICCRQTLHSEFELSLHAKFHTKSPGCNSLQEPVCALCLEPLPGAGETAKLCDKCCRKHNLNGKRKEQVQPAAIAAPAAAAAAIAASAYLEHRCNLCKMILPHAQKLQEHLVEHTFAGTEQRGYNCYICSAVFTAPAGLLAHMAEHGTRPYDCNLCPEKFYFRAELEHHQRAHELRAQPAPARHPKQEAHSSTESSPVTLSPSHVKQELYEPEPANSPNAADPPVQQQQQEEEEYIEVEQMPQETQRAGEQLSTERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00502755;
- 80% Identity
- -