Dbuz002011.1
Basic Information
- Insect
- Drosophila buzzatii
- Gene Symbol
- ken1
- Assembly
- GCA_035045845.1
- Location
- JAWNOS010000062.1:2538534-2540966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0094 0.74 10.6 2.9 3 23 271 291 269 291 0.96 2 12 0.00087 0.068 13.9 1.4 1 23 297 322 297 322 0.94 3 12 7.9e-05 0.0062 17.1 1.4 2 23 330 354 329 354 0.93 4 12 0.0027 0.21 12.3 4.8 1 23 365 387 365 387 0.97 5 12 0.00022 0.017 15.7 1.9 2 23 395 416 394 416 0.96 6 12 0.00087 0.068 13.9 0.5 1 23 422 444 422 444 0.97 7 12 0.0012 0.095 13.4 5.3 1 23 450 473 450 473 0.97 8 12 0.00063 0.049 14.3 0.9 1 23 479 501 479 501 0.97 9 12 0.01 0.79 10.5 2.3 2 23 508 529 507 529 0.96 10 12 9.9e-07 7.8e-05 23.1 0.5 1 23 618 641 618 641 0.97 11 12 0.062 4.8 8.0 0.8 1 23 647 669 647 669 0.92 12 12 4.9e-07 3.9e-05 24.1 1.7 1 23 675 698 675 698 0.98
Sequence Information
- Coding Sequence
- atgaatgAGGAGAGTGACGATTCCATACATTCGTTATGCCGCATTTGCTTGAATAATTTGCGAAACGATCCGGCATACGACCTGTTTCTTGTACCTGGCTTGGCCAAGAAACTTTGTGTGTGCACTTCACTCTCAGTGGAACAACACGATGGTTTCCCAAGATGCCTTTGCTCCACTTGTCATACTCGGCTGAACGACTTACACGAATTTCAAATGCTTTGCGTGGATTCTGTGCAAAAGTTTCAGGAAATGGTTTCGAGCAACTACTTTGCTGCAGTTGAAGATGTTGACAATATAGTTGTAGTCAATGATGCTAAGGCGGACATAGAGGAGGATCATTTAAGTTTCGATCCACTTCTAAATACAAAAGTAGAGATTGTGGAAACTGATGTTCTTAAAATGCTTGACGATGTGGACAACGAAGTTCAGGAGGCTGAAAACGAGCTGTCTAGTGATGGCGATTTCGAAAATGATGACGATCCGGAATTTGAAGTAAACAGCAATGACTCGAATGATGACCTGCCCCTGTCCCGTTTGAAAACTGTTACTAGAGCATCAAAGGCCAAGAGCAAATTTGTGGTAGAAGATAAAGATAAGGATGAAGATAAAGATAACGATGAAGATAAAGATAATGATgaatataaagataaagataacgATGAAGATAAAGATAACGATGAAGATAATGATAAGGATTTCTCAGACTTCGAATGGGAGATGAATGATGACTTTGATAAAGAAGAACCCAAACCCAAATCTAGAGGAAAACGCGCAACAAAACCGAAAGCAAAACAGGATGATGCAATTGATTGCCACATATGTAATGAAAAGTTCCAGGACACCAAGCTTTATGAGGAACATATGCAGCATCATAACGATATTCTGCCATTCCAATGCACTGTAGAAACTTGTAAGAAGGGATTCAGTACATCAGGTAGATTACGCCTTCACATGGATCATGCTCATTCGGAACTTTCAGAAGTTCACGCCTGTTCTGTAGAGGGATGTGGCATGACATTCCCTCGATCTCGTTTACTTACGCATCATTTGAGAAGGATtcataaaatcataaaatcaTCTCGGGCTAAGGATCATCCTTGTACGGTGTGCGAGAAAGTTTTCCGTTGTTCCACAGCCCTTAAAAAACACATGTACAAGCATACCGGAGAGGAGAAGCCGATTTCCTGCAACATAtgcaacaaacgttttcacATAAACAGCGAACTCAAGGATCATCTCCTACGACATGCCGGTGTAAAAAATCACATTTGTCCGTATTGTGGTGTGGGTAGGACAACTCGTCAGGAGTGGAACAAGCACATATTGACGCACACGAGGGAAAAGCAGTTCAAGTGCGATCATTGCGATCATtcaacacacaacaaacagGCTCTGAAAAATCACATTAATGTTGTGCATTTGAAAATTAAGAATTATGCCTGTCAGTATTGCGGCAAGACATTCGGCAAGTCTTATGCCCGCTATATCCACGAGAGAAGTCACACTGGTGAAAATGTTTGTGAATGTAAGATCTGTGGTAAGATTTTACTTTTTGAAAAGAGCTTGACAAGGCATTTGAAGACTCATGAAAAGCGCGATCAAAGCGAATCAGCGAAAACTGTGAAACGACGGGCAGCTGTTAATGCGAAACAGAAGCAGAGTATGAATGGAGATGTGACAGATACAGTGGTTGCTAAGCCAATAGCGACAGAGCATCCTAAGCAGAAAATCGGAGTCAGGCTAGAGCGGGTTGATATATCCCAGTTGGCCGGTACAGCCGTCAATCCCATTCCAACTGTTTCTGTGGCATCCTGGTCACCCCAAGTCGACTTCTCTATGAAAGAGGGCCGGTACATTTGCCCAGATTGTGGGCGCGTCTTTAACACTAAGGCAAATATGCAGCTTCACCATAAGATAATACACTTGAAGGTGAAAGATTTCGCCTGTCGCTTCTGTCCTAAGCGCTTCTCAAAGGCACAAATCTTACGTCAACATGAATATATTCATACGGGAGAAAAGCCGTATGAATGTACGATATGTGGAAAATTCTTCCGACAATCGTCAGTGCTGAAGACGCATAGAAGAAAAGTACACGAGAACCCGAAGCCTCGCAAAGAGCGCAAACCCAAATATGTTTCTAAAGAAAAAAGGCCGAAGATGAAGCTCAACAAGAAACCTCCCAAGCTTCTTGATGAATATCAAGATGCGTCAGCGGAGCGGGAGGCAGCAAGCGCTGCACTGCTGGCCCAACAGAAACAGGAGTATGAAGCTAAACAAAGGGCAGAGGAGGAGGCGCTCAAGATTCAAGAGGCAGCTTGCGCACAACTTCAGATGCTACAAAAGGAACAACTTATTAACAAGTTACCCAGCGAAAGCTTTCAAGTAAAAAAACCTGCAACAGGCATTAGTGTGGACGACCTCAAAGAAGATTag
- Protein Sequence
- MNEESDDSIHSLCRICLNNLRNDPAYDLFLVPGLAKKLCVCTSLSVEQHDGFPRCLCSTCHTRLNDLHEFQMLCVDSVQKFQEMVSSNYFAAVEDVDNIVVVNDAKADIEEDHLSFDPLLNTKVEIVETDVLKMLDDVDNEVQEAENELSSDGDFENDDDPEFEVNSNDSNDDLPLSRLKTVTRASKAKSKFVVEDKDKDEDKDNDEDKDNDEYKDKDNDEDKDNDEDNDKDFSDFEWEMNDDFDKEEPKPKSRGKRATKPKAKQDDAIDCHICNEKFQDTKLYEEHMQHHNDILPFQCTVETCKKGFSTSGRLRLHMDHAHSELSEVHACSVEGCGMTFPRSRLLTHHLRRIHKIIKSSRAKDHPCTVCEKVFRCSTALKKHMYKHTGEEKPISCNICNKRFHINSELKDHLLRHAGVKNHICPYCGVGRTTRQEWNKHILTHTREKQFKCDHCDHSTHNKQALKNHINVVHLKIKNYACQYCGKTFGKSYARYIHERSHTGENVCECKICGKILLFEKSLTRHLKTHEKRDQSESAKTVKRRAAVNAKQKQSMNGDVTDTVVAKPIATEHPKQKIGVRLERVDISQLAGTAVNPIPTVSVASWSPQVDFSMKEGRYICPDCGRVFNTKANMQLHHKIIHLKVKDFACRFCPKRFSKAQILRQHEYIHTGEKPYECTICGKFFRQSSVLKTHRRKVHENPKPRKERKPKYVSKEKRPKMKLNKKPPKLLDEYQDASAEREAASAALLAQQKQEYEAKQRAEEEALKIQEAACAQLQMLQKEQLINKLPSESFQVKKPATGISVDDLKED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00599788;
- 90% Identity
- -
- 80% Identity
- -