Dbus005913.1
Basic Information
- Insect
- Drosophila busckii
- Gene Symbol
- -
- Assembly
- GCA_011750605.1
- Location
- NW:98542-101709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00024 0.014 15.3 7.7 1 23 166 189 166 189 0.96 2 15 0.00042 0.025 14.5 2.3 1 23 247 270 247 270 0.96 3 15 0.021 1.3 9.1 1.3 1 23 323 346 323 346 0.91 4 15 0.012 0.72 9.9 0.2 2 23 395 416 394 416 0.96 5 15 0.017 1 9.5 0.3 1 23 559 581 559 581 0.95 6 15 0.0002 0.012 15.5 2.6 1 23 588 610 588 611 0.95 7 15 0.00062 0.037 14.0 1.0 2 23 619 640 618 640 0.95 8 15 0.00087 0.052 13.5 0.1 3 23 668 690 666 690 0.89 9 15 0.012 0.71 10.0 3.1 1 23 728 751 728 751 0.96 10 15 0.27 16 5.7 0.6 1 22 758 779 758 779 0.96 11 15 0.0013 0.08 12.9 1.2 1 23 788 811 788 811 0.97 12 15 4e-05 0.0024 17.7 0.5 1 23 829 852 829 852 0.96 13 15 0.0014 0.081 12.9 0.2 1 23 862 884 862 884 0.96 14 15 8.6e-06 0.00052 19.8 1.7 1 23 890 912 890 912 0.99 15 15 2.2e-05 0.0013 18.5 1.6 1 23 918 940 918 940 0.98
Sequence Information
- Coding Sequence
- ATGACCAGAACATGTAGAATATGTGGTGGACATGATGGACGTTATTGGATTGAGACACCAGTGGATAAATTCGCAAAAAAGACATTCAGTCAAATACTGTTTGAGCTTGCCAGAATTGAAATTGCTGCTGAACAAGCGGATAAGTTGCCGCCTTGGATATGCAACAGCTGTGTTCAGAAATTGGAGGAGTTATATGATTTCGTGCAGCAGGCACGTCAAACACATGAACTTTTGCTTAATGGGGtccaagcacacacaaaacataTGGAAACAGCCACCTTGGAATGCTTGCGGGAAACGCCCATACAACTATTAGATATCGAAGGCATAACTATAAAGACAGAAGAACCATCAGAACCCGTGATTTCTGAAGCTGTGCCAAGCTTCAGTGTGGATCCCCTGGTTAGAAAATCTATTGTCTATATCACTAGTGATGAAGATGATAATTTACCATTAAAACAACGCAAAACTTCCCAGTCAGTTTTGGGAAATCACCATCAATGtaagaaatgcaaaaagtcGTTTAAACACGTAAGGAATCTCTTCaggcataaacaaattattcatGGACCAGAGCAGACCAATATACAAAGTACCTCAGCCGAAGAAACACAAAGGAAACTTCGCGTGAACCTTTTGAGTAGCCGAGATAGTTCCGAGTAttacacaatttatatatttgtgaatcttaataattatgaatttatttttagtacaGATTATGCAGAAGAGAATTATTACAAGTGTGATGAATGCGATAAGTCCTACAAGTATATAATACTTTTGATCAAACACAAGCATAAGGTTCACGGAGTTTACAATCTCCCAGTCAGTCATGCCTCAAGAAAGTCTGCTGAGCGAGCTCACTTTAGACCTATAACCACAGATTCTCTAGTACATAGTATAATAAAGGAAGTAACCATATCGGATGAAGATGATCCTGACAGTTGCGGTGCAGGCAACTACTACGAATGTGACCAATGCGACAATTCGTATAAATACATTGTAAGTCTTATAAAGCACAAACATGATGAacacattaaatgcaaagatATAGAGGAAATCAAGGACGAAGCCACCTCTTCTAGATACACAGATCTATTAACAAGGACACCGCGCATAAGTCGACGTATAAAGACCTTTGACTTAAATCGATGCAAGCCCAATGGATCCAAGGAGATTCAATGCATGATCTGTCTGCGTCGCTTTATTAAAATGGGTGAACTGCGCGATCATCTAAAAGCCCATCCGAAGAACTTTACATTCGACACTCATGGCGAGCCCATTGAACGCATTTCGGAGGGCTTCTTCAAAACCGCTGTAGAAACAACAGCTGCAGGGCTTAAGAAACGTATACTAAATGATCTCAAGGCAGGAATATACGTCCGTTACTATTCTATTACAAACGAGGCGAACTACGAAATGAATCTGGATAGCTCTGACACGGATAGTGATGGTGAAGGAGACGTTGTCGAGCGACGTAGTTATGCTTGTGAACTGTGCAATTCATCAATCGCAGTTTGGCCCCGAAAATATCAGCTACATGAACATCATCGACAGCAACACACTTGGCTGTCAGCTCCGCATGTTTGTCAGCGTTGTGACTCACGTTTTCTCAGCGTCCAGCTACTGGACCACCATATCCACAAGCTATGCCAAAACACGCTCAAGCGTTTCATGTGCGACAAGTGTCCACAGCGCTTTTTTTGGCGTCCCAATCTACGCGCTCACCTTATCGACCACAAGAACAAGCAAGATAATTATCCGTGTAATCAGTGCTCGCGAAGCTTTCAAGATAAGAGCGCAGTAACAAAGCACAAGCTAATGCATCATGACAGCAccaacaagctgctgccttGCCGTTGGTGCACACGTACATTTTATCGACCTGCTCTTTTGCATAAACATGTAGAGCGGCATGGCTTCAGTGGCGAGGATATACCCCTGGCAGAAACACTGCTTGCAGATGCGGCCAAGTCAGCAGGACCGAAGACCATCATTTGCAAACTTTGTGACATGCAGTTTATCAGCATTGCGGATCTGCGGCGTCATATGTCTATGCAGGGCCATAGTCTGCTCGCCCAAAACTATATGATAGGCACCGAGGAAGGATTCGAGCTACAACTGGATGAAACTGATGATAGTGATGATGAAACCACCACCGGTTTCACTTGCAACTCCTACAGATGTGATCTCTGCCAATTGACATTTCAACATCGCCGTGACATGAACGAGCATCAGTATTCATTGCATAGCTTCCACAAGCTCCCTTATTCATGTCCCCATTGCATTTTCAGGTCTGTCGATAAGaaCATGTTAGAGTATCATTTGCGAACACAATGTGCAAATGTGGAGAAGAAATTCAAATGCTCTCGCTGTGGCTACAAATTTATGTGGCAAGAGAATCTGGAGCTGCATATGAGCAAACAGCATGACAAGTCATCCAACTTGACGTGTATGCCGACTAAGCGCAGGCGATTTAGATACCAATGTCCGCATTGCTGGCGCTCGTTTGTTGTGCAGCCCAGCCTTGACAAGCACGTACGTGACATGCATGTCGCTAAAAAGAATCCTGGAAAGAAGTATTTATGTTCACTTTGCGGTCTGGAGTCAATCACACccaataagcttaaaatacatatgcaaCGGCATAATGGCGAGAAACCATTTAAATGTGACCTTTGTGATATGTCATTTACCGTTTATTACGAGTTAAAAGTTCATCGTCGCAAACACACAGGCGAGAGACCATATCAGTGCACATTCTGTGCGAAGGACTTCACCAGACCCGACAAGTTAAAACGACATGTTTACATGCATAGCGTTAAGCGTTAA
- Protein Sequence
- MTRTCRICGGHDGRYWIETPVDKFAKKTFSQILFELARIEIAAEQADKLPPWICNSCVQKLEELYDFVQQARQTHELLLNGVQAHTKHMETATLECLRETPIQLLDIEGITIKTEEPSEPVISEAVPSFSVDPLVRKSIVYITSDEDDNLPLKQRKTSQSVLGNHHQCKKCKKSFKHVRNLFRHKQIIHGPEQTNIQSTSAEETQRKLRVNLLSSRDSSEYYTIYIFVNLNNYEFIFSTDYAEENYYKCDECDKSYKYIILLIKHKHKVHGVYNLPVSHASRKSAERAHFRPITTDSLVHSIIKEVTISDEDDPDSCGAGNYYECDQCDNSYKYIVSLIKHKHDEHIKCKDIEEIKDEATSSRYTDLLTRTPRISRRIKTFDLNRCKPNGSKEIQCMICLRRFIKMGELRDHLKAHPKNFTFDTHGEPIERISEGFFKTAVETTAAGLKKRILNDLKAGIYVRYYSITNEANYEMNLDSSDTDSDGEGDVVERRSYACELCNSSIAVWPRKYQLHEHHRQQHTWLSAPHVCQRCDSRFLSVQLLDHHIHKLCQNTLKRFMCDKCPQRFFWRPNLRAHLIDHKNKQDNYPCNQCSRSFQDKSAVTKHKLMHHDSTNKLLPCRWCTRTFYRPALLHKHVERHGFSGEDIPLAETLLADAAKSAGPKTIICKLCDMQFISIADLRRHMSMQGHSLLAQNYMIGTEEGFELQLDETDDSDDETTTGFTCNSYRCDLCQLTFQHRRDMNEHQYSLHSFHKLPYSCPHCIFRSVDKNMLEYHLRTQCANVEKKFKCSRCGYKFMWQENLELHMSKQHDKSSNLTCMPTKRRRFRYQCPHCWRSFVVQPSLDKHVRDMHVAKKNPGKKYLCSLCGLESITPNKLKIHMQRHNGEKPFKCDLCDMSFTVYYELKVHRRKHTGERPYQCTFCAKDFTRPDKLKRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -