Dbur017735.1
Basic Information
- Insect
- Drosophila burlai
- Gene Symbol
- -
- Assembly
- GCA_008042655.1
- Location
- VNJT01014038.1:8285-11438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 10 7.7e+02 1.0 1.5 3 13 61 71 60 76 0.81 2 13 0.02 1.5 9.5 1.1 1 23 153 176 153 176 0.97 3 13 5.1e-05 0.0039 17.6 5.1 1 23 181 204 181 204 0.94 4 13 4.3e-05 0.0033 17.9 2.1 1 23 209 231 209 231 0.98 5 13 2.2 1.7e+02 3.0 4.5 2 23 238 261 237 261 0.91 6 13 0.00056 0.043 14.4 3.9 3 23 272 293 271 293 0.95 7 13 0.0045 0.34 11.5 0.2 1 23 299 322 299 322 0.95 8 13 0.0064 0.49 11.0 0.1 2 23 333 355 332 355 0.93 9 13 0.00017 0.013 16.0 0.3 1 23 383 405 383 405 0.97 10 13 7.4e-06 0.00057 20.3 4.0 1 23 412 434 412 434 0.97 11 13 0.0002 0.016 15.7 0.1 2 23 441 462 441 462 0.97 12 13 0.00043 0.033 14.7 0.8 1 23 469 491 469 491 0.99 13 13 0.00012 0.0092 16.5 3.7 1 23 497 520 497 520 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGGACCTGTGCGATTTCCATGTTTGTGTGCGACTTCGAAAATGGCAGCAACAACTTCCTGGACCTCTACCATTCCAACTGCTGGCCCACCGAAATTGTTCAAATACGCCAGCAGTTCTTCAACTGGAATCTAAAGATCTCACCTAACGACGGACTGCCCCAGAAGATTTGCAGCGACTGCTTTACCAAGTTCTGCTCCATTAACGCTTTCCGAGTGGCCTGCCAAGAGGCGCAGATTTTTGTGGATGCCCTAGACATCGAGGAAGAGGCGGAAGAGGAAGCGGAAGTGGAGGCGGAGTTAGAAGAGCAACTACCGGTGGAATCTGCATCTCCGGAACTCACCATTACCTATGCCTGCAAGTTTTGTCTGCAGCCGCAGGAGAGCTATCAGCTGCAGCAACACTTACTGGAGCACATCAATGCCAATCACGATCCGGAGCAGCCGTACAACTGTTCGGAGTGCGAGGCGCGATTTCAGGATGCCGCCTCCCGTACTGTGCACCTCAAGAGCTGTCACGTAGAGAAGCAGCACGCATGCGAGGTGTGCGGCAAGAAGTACAGCGATCGTCACAATCTGCGCCACCATGTCGAGAAATATCATTCAGAGACGGACTTCGAGTGCGGCCTGTGCGAGAAGCGTTTCTTCACTCGGAAGAGTCTTAACTACCATATGAAGTGGCATAATCCGGAGCGCCAGTTAAAGTGCCGCCAGAGCGGATGCGATCGTTTATTCATCAGTAAGCGGCACCTTAAGTGCCACGAGGACACGCACACGGGCACCAGTGCCAGGAAGAGCGAGCACTGCGGCTTCTGTGGGAAGACTTTCATACACCTGAAGACCCTTCGCTGGCATATCTACAGGCAGCATGGCGGCGAGAAGCCCTTCAAGTGTGCCAACTGCACGGAGGTTTTCGCATCATATGCGGAGAAACGAATCCACATGTTGGAGCGGCACAGGGAGAATTTGACGGCCATCGAGCGGAGTGAGTGCATGCTGTGCCGCCAGGCCTTCACCAGCGAGAAGGATCTGGTCCTGCATATGTCCGCTGACCACTTGCAGCAAGCCGGAGCTCCGGTGATAGCCAACAACAAGCGTGTGATCCAGCAGAAGCGGGAGCGTCAGTATTCTGGACTCTTCCAGTGCGACAGCTGCACCCAGCGATTCAACATGAAGTCAGCGTTGGAGCGGCATGCTGCAGTTCATTCGGAGAAGGATCGACCGCACGCCTGTCCGCACTGCTCAAAGAGATTCAAGCGCGCCCAAGACATGAAGTGGCACATAAAGACGCATGAGAAGGAGAAGCCCAATGTGTGCGACGTTTGCGGCAAGGCCTTTGCCTTGAAGTATGTGCTAACGCAGCATCGCTTGAGCCATGAGAtCTTGGAGAAGAACTTTAAGTGCAACGTTTGCGGTCGCGCCTATCTGTTTGAGAAGTCGCTGCGGCTCCATCAGCGGGTTCACACCGGAAAAACCTACTACAAATGCGATCTCTGCCAAGAACGATTCGTCACGCACATCAAGCTGAAAACTCACATGCAAAAGACACACGCCTCTCAGCCGAATATAGCTGATCCTCTGGATGATTTGATAAACATTGTGATTTCCTAG
- Protein Sequence
- METCRTCAISMFVCDFENGSNNFLDLYHSNCWPTEIVQIRQQFFNWNLKISPNDGLPQKICSDCFTKFCSINAFRVACQEAQIFVDALDIEEEAEEEAEVEAELEEQLPVESASPELTITYACKFCLQPQESYQLQQHLLEHINANHDPEQPYNCSECEARFQDAASRTVHLKSCHVEKQHACEVCGKKYSDRHNLRHHVEKYHSETDFECGLCEKRFFTRKSLNYHMKWHNPERQLKCRQSGCDRLFISKRHLKCHEDTHTGTSARKSEHCGFCGKTFIHLKTLRWHIYRQHGGEKPFKCANCTEVFASYAEKRIHMLERHRENLTAIERSECMLCRQAFTSEKDLVLHMSADHLQQAGAPVIANNKRVIQQKRERQYSGLFQCDSCTQRFNMKSALERHAAVHSEKDRPHACPHCSKRFKRAQDMKWHIKTHEKEKPNVCDVCGKAFALKYVLTQHRLSHEILEKNFKCNVCGRAYLFEKSLRLHQRVHTGKTYYKCDLCQERFVTHIKLKTHMQKTHASQPNIADPLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00491676;
- 90% Identity
- -
- 80% Identity
- -