Basic Information

Insect: Drosophila burlai
Gene Symbol: salm
Assembly: GCA_008042655.1
Location: VNJT01010638.1:58015-65227[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.2e-06 0.00017 21.9 1.7 1 23 340 362 340 362 0.98

2 8 3.1e-05 0.0023 18.3 3.5 1 23 368 390 368 390 0.98

3 8 2.1 1.6e+02 3.1 2.5 5 23 627 645 624 645 0.84

4 8 3.2e-08 2.4e-06 27.7 0.2 1 23 651 673 651 673 0.98

5 8 0.00096 0.073 13.6 0.9 1 23 683 705 683 705 0.98

6 8 0.048 3.7 8.3 0.1 2 23 916 938 916 938 0.96

7 8 1e-05 0.00079 19.8 5.0 1 23 1087 1109 1087 1109 0.96

8 8 8.3e-08 6.3e-06 26.4 0.7 1 23 1115 1137 1115 1137 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.2e-06	0.00017	21.9	1.7	1	23	340	362	340	362	0.98
2	8	3.1e-05	0.0023	18.3	3.5	1	23	368	390	368	390	0.98
3	8	2.1	1.6e+02	3.1	2.5	5	23	627	645	624	645	0.84
4	8	3.2e-08	2.4e-06	27.7	0.2	1	23	651	673	651	673	0.98
5	8	0.00096	0.073	13.6	0.9	1	23	683	705	683	705	0.98
6	8	0.048	3.7	8.3	0.1	2	23	916	938	916	938	0.96
7	8	1e-05	0.00079	19.8	5.0	1	23	1087	1109	1087	1109	0.96
8	8	8.3e-08	6.3e-06	26.4	0.7	1	23	1115	1137	1115	1137	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAACCGCATCAATTACCGTGGGACTGGCGGCACCAGGAGCGGCAGCGGGGAGCGGGACAGGGATCGAGAGAGAGATCGGGACAGAGACCGCGACCGGGATCGGGACAGGGACACCCtgctggccaaggagctggaTGCGGACAGCAATAACAATGGCACCGAGGCACCGCAGGTGGAACCGGAAGTGGAAGCAGCTCCCGATTGCTCTGACACGGAACGAgaggcggagcaggagcaggagcgggagcgggagcgggagcaggatcaggagcTGGACAACAGCAACGAGGCCCTCGATCTCTCGGTGATCTCGGCCAGCGGCCGGGGATCGCTGCCGGGCAGTGGTCACGTATCGCTGGAGGCTTTACAACATACCAAAGTGGCGGTGGCCCAGTTCGCGGCCTCAGCGCTGTCCGGAGGCGGGGGAGGCCAGTCCGCCGACCTGGCCATAGTGCAGTCCACCATGTTCAATGTGCAGCGACAGCATCtgatgcagctgcagctcatCCAGCACCTGCAAAGTCAATTGAAAAGGGCCGAGGCCGTGGCCCTGGGCAGGCCGGTGCAgagcgacgaggaggaggatgaagCGGAGACGGAGCCGGAAACGGAGCCCAAAGAGGAGCCCAGCAATGGCCTGAAGGAGGAGGCCCAGGAGCAAGCGGAGGAACAGGAACAAGAGCGTGAACGCGTACCCGAGCTGGAGGAGAGTTCAAAGACTGACAAGGCGACGACTGAGGAGAGAAGAGTGCCGACGGAGTTGGAGGGCTCCGACTACCAGCCACTGATGTGCGACATCAGCTCGAGCTTGGCCTCGAGCATCATCACCAACCACGATCCACCGCCGGCTCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGCCGCACGGAGGAGGTCCTCGACTCCGCCTCCCAGAGCCTGCATGCCGcccagctgcaggaggagTACTCGGAGTACGCCTCCAAGGAGGCCCAGAGCCGGGGTGAGATATTCAAGCATCGCTGCAAGTACTGTGGCAAGATCTTCGGCAGCTACTCCGCCCTCCAGATCCACCTGCGCTCGCACACCGGGGAGCGGCCCTTCCACTGCAACGTCTGCGGCAGCAAGTTCACCACCAAGGGCAACCTGAAGGTCCACTACCAGCGGCACACGCAGATCTTTCCGCCCATGCTGCTGCCCCCGGGAGTTGCGCCCAATGttggacagggacagggacagggtcAGGGACAGAGTCAGGGTCAAGTGCAAGCCGAGCAGTTCCCCATGCGACTGCCCTTTGTACCCCCTGGGATTCCGCCGGGTCAGGAGCAGGTGCCACAGCAGGCAGAAGAGCAGGAGGAGATCAAGTCGGAGACTCCAGCTCAGCAGGCTGAAGACCTCAGCAAGCCAGCGGCGAAGGAAAAGGAGAAAACGCAGGAGAAGGCTCACTCGCCCGTGGCGCGTGCCAAGACCCCCAAAGCGGTGACACCCGAGATGAAGCCCAGACCACCACCCATCCCAGCTGAATCCTCACCCGAAAAACCCGAGAAGGAAGCTGCTCCTCCCAAGCCCGCAACGACTCCCTCTCGCAGGAATGGCTCCGTGCGCAAGCGACAAACCAGCAGCGCTGGAAGTCCGCCGCAGGAGGACAGGGAACGGGATCTCGCCGAGCATCTGCACATAGCCAAGCTGGTGAGACGCTCCTCCTCGAGCCGAGAGTCCCAGCAGCCGGCCGAGTACTCCCTCGCCCAAATGGAGCGCATCATCGACAAGTCCTGGGAGGACCTCATCGAGATTGACAAGACCTCGGAGACCtcgaagctgcagcagctggtggaCAACATCGAGAACAAGCTGACCGATCCCAACCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCCCTGCAGATGCACATCCGCACCCACACCGGCGAGCGACCCTTCCGCTGCAAGATCTGCGGCAGGGCCTTCGCCACCAAGGGTAACCTCAAGGCACACATGAGCATACACAAGATCAAGCCGCCGATGAGGAGCCAATTCAAGTGCCCCGTGTGCCACCAGAAGTTCTCCAACGGCATCATCCTGCAGCAGCACATTCGCATCCACACCATGGACGATGGTGGTCAGGGAGGTGCTAATCCAAATCCCGGCGAAGCTGAGCGGCTGGGCATCGAAGATCAGAACTCGAACAAGTCCATGGGCACCTCCGACACCCTGGACTTCTCCACCACCATTTCGGATCACTCGGGCCAGAGGTCCGAGTCCTCGCAGGGCGGTGACTTTGATGAGTTCATGACCATGGATAGTACCGATGACTCCAGGGATAATTCAAGTGCGGCCACGGCCACGCCTCATCCCTTGGAAAGGGATAGGGAGAGAGATAGGGAGCGGGACCGAGATCGAGACCGCGAGCGAAGGCCACCCCACGATGGCTCCGATGAGAGATCGCACTCCAACCCTGACCTCGCTGGAGGTCGTTCAGAGAGCGGCGACATGCCCGCCATGGATCTGTCCTCCCCCTCGTCCGCCTCTGGTCGCATTTTCGGCGCTGCCATGGTCAATGGTACGGCGGGTGGGGGACCGGGAATGCCCATGCTGGGCATGCCCATGCCCCCAAACCTGCTGCTCATGGCGGCTGCCCGCGAGGAAATGCATGCCctgggccacgcccacgccaaGTTCCCGCTGCTGCCCTTCGGTCCTCTGGGATTTATGGGCCTGCACCCGCCCCCCAATGTGTGCAATCTCTGCTTCAAGATGCTGCCCAGTTTGGCTGCCTTGGAGAGTCATCTGCAGAGCGAACATGCCAAAGAACCGGCCACGGGCCATGCCCACCGCCCACACTGCAACGAGGCTGGAACACCGTACGGTGCCAAGCTCACTCTCAACCCGAATCTGTTTGCAAAGAAGCCGCCTTCGACGGGCGACAAGCTGCCGCCGGAGTCGTCACCCCGCCCGATGTCACACAGCTCGGAAGCAGCCTCCGCAGCCACACCGgtcaaggaggagcagcccGATCAGGATCATCTGGCCCTCGAGGAGGGTGCCTCATCGGCAGGCGAAGGCTCTACGCcaggtgctggtggtggttcTTCTAGCTACCCCCAAGAAGCCGGCGATGCCGAGCAGTCGCTGATGAAGATGCAGCTACATGCCCATCGCTTTCCGGCCAGTCCACTTGACTTTCAGCAGGCTCTGATGTCCGCCGGTCCGCCCAGCTCTAGCCTGGATCCGCCGGTGAACAACAAGCATTTCTGCCACGTCTGCCGGCGGAACTTTAGCTCTAGTTCCGCCCTCCAGATCCACATGAGAACCCACACGGGCGACAAGCCCTTCCAGTGCAATGTCTGCCAGAAGGCCTTCACCACCAAGGGGAATCTCAAGGTACACATGGGCACGCACATGTGGACGAATCCCACTTCGAGGCGAGGACGTCGCATGTCCCTGGAGCTGCCCATGCGTCCTGGCCCAAACCAGGGCGCGGGACATCCAGGATCGAGTGCCGAGCAGGAGTTTATGCAGCGAAGGCCAGAGCTCTTCTTTCCCTACCTGCCGCCCTTTTTCAATGGACTGCCACCAAAGCCTGGTGAACTGAGTCCCGGCGCCTTTCCCAACATCCCTCCGCCGCCGTTTGCCAACGGAGGCAAGTATCCCTATCCACCTGGTCTGCTAGGCTTCCCGGGTTTCCTGGGACAGCATCCCTATGGCATGGataggaggagcagcagcaagtcaCCCACGCCAGAGCCAGCCCAGAGTCCCTCGCTGAGGGAGGACGAAATGGTTGCCGGCAGTATTTGGCATCCGCTGAGCAGGATCAAGGTGGAGGGCAACCGGGGCGAGGACCTGCTCCAAGAGCAGGATGACCAGGCGGAGGCCGAGACAGAGGCCGCCGGGGGCGGAGACTTGGAGGAGTCGGAGTCAAGGGATGGCGAGAAGTAA
Protein Sequence: MCSIFRNRINYRGTGGTRSGSGERDRDRERDRDRDRDRDRDRDTLLAKELDADSNNNGTEAPQVEPEVEAAPDCSDTEREAEQEQEREREREQDQELDNSNEALDLSVISASGRGSLPGSGHVSLEALQHTKVAVAQFAASALSGGGGGQSADLAIVQSTMFNVQRQHLMQLQLIQHLQSQLKRAEAVALGRPVQSDEEEDEAETEPETEPKEEPSNGLKEEAQEQAEEQEQERERVPELEESSKTDKATTEERRVPTELEGSDYQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQLQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVAPNVGQGQGQGQGQSQGQVQAEQFPMRLPFVPPGIPPGQEQVPQQAEEQEEIKSETPAQQAEDLSKPAAKEKEKTQEKAHSPVARAKTPKAVTPEMKPRPPPIPAESSPEKPEKEAAPPKPATTPSRRNGSVRKRQTSSAGSPPQEDRERDLAEHLHIAKLVRRSSSSRESQQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGGQGGANPNPGEAERLGIEDQNSNKSMGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPLERDRERDRERDRDRDRERRPPHDGSDERSHSNPDLAGGRSESGDMPAMDLSSPSSASGRIFGAAMVNGTAGGGPGMPMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKEPATGHAHRPHCNEAGTPYGAKLTLNPNLFAKKPPSTGDKLPPESSPRPMSHSSEAASAATPVKEEQPDQDHLALEEGASSAGEGSTPGAGGGSSSYPQEAGDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPNQGAGHPGSSAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFPNIPPPPFANGGKYPYPPGLLGFPGFLGQHPYGMDRRSSSKSPTPEPAQSPSLREDEMVAGSIWHPLSRIKVEGNRGEDLLQEQDDQAEAETEAAGGGDLEESESRDGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527496;
90% Identity: iTF_00527496;
80% Identity: -