Basic Information

Gene Symbol
hang
Assembly
GCA_008042655.1
Location
VNJT01009339.1:71963-81760[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.22 16 6.2 1.0 3 23 444 465 443 465 0.93
2 15 0.7 53 4.6 3.1 3 22 573 592 571 592 0.89
3 15 0.00046 0.035 14.6 3.3 1 22 711 732 711 734 0.90
4 15 0.04 3 8.5 0.1 2 21 746 765 745 766 0.93
5 15 0.00054 0.041 14.4 0.2 2 23 902 924 901 924 0.95
6 15 0.0015 0.12 13.0 0.1 1 23 932 955 932 955 0.96
7 15 1.7e-05 0.0013 19.1 0.1 2 23 1017 1038 1017 1038 0.97
8 15 0.00022 0.017 15.6 2.9 2 23 1120 1142 1119 1142 0.97
9 15 0.017 1.3 9.7 0.2 2 23 1151 1173 1150 1173 0.95
10 15 0.0017 0.13 12.9 0.1 1 23 1186 1209 1186 1209 0.97
11 15 9.7e-05 0.0074 16.8 1.1 1 23 1278 1300 1278 1300 0.99
12 15 0.0015 0.11 13.0 0.9 1 23 1308 1331 1308 1331 0.96
13 15 0.21 16 6.3 0.4 2 19 1339 1356 1339 1357 0.93
14 15 2.5e-05 0.0019 18.6 1.4 3 23 1445 1465 1444 1465 0.98
15 15 0.0039 0.3 11.7 0.1 1 23 1500 1522 1500 1522 0.97

Sequence Information

Coding Sequence
atgggaatgggaatgggccagggccagggccagggcctGGGCATGGGAAGCGGGAAGAGGCCAGCGGGAACGGACGGCAGGCAGCGGGAACGGGACGGAGACCCTGGCCGGGCTCAAAATTCGAGTGGTTTCACCTTGGGCACCAGATTACCTGGCCTGGGTCTGTTGGGATGTCAATATTTCTGCATTGGCTTTAGCTTCTTTGGCATCTCCTTGTACATCATCTTCTTCTTCGCTTGGCCATGGCCACGGCTGGGCTCCTCCTGCGACCCGCATCGAATTTCATCCATCAGCCTCCAGTCTCGCTTCTCCATTTTGTGGCACTCTTGGATCACCTCACAGGATCGACTGTCGCTGCATATATGCCACGCCTGCATCAGCTACCTGAACTCGTGGCAGAGCTTCAAGAACCGCTGCCTCAGCTCACAGACAAAGCAGCGCCAGTGGCTggacaccagcaacaacaacaagagcaagCTCTTCAACTACCTGGACCTGAACAGTGCCGAGAACGGTGGAGGAGCCTCCTCcgatcaccagcagcagcagcattcgcAGCAATCGGAAAATGAACTCGACTCGGCGGCAGAGAAGGcgacgacagcagcagcgaccACAACGGCCGCCAACATATTGGATGGCATACCCTCGCTGAAGAAACGCAAATCCCTAACAGTCTATCCGAAATTGTACTTGCCACTGGATATAGCAGTGCCGCCACTGCCACCGattgctgcttctgctcctcctgctcctccgcctgccCCTGCTGCCGTTCCTGCTGCTGAACAGCCGCTGCTTTCGGGATTCTCCTCCGGTCTAACCGGAATTGTTGCTggtggtgtgggtgtgggtggtgGAATGGAGAGCTTGTCGTTGTCGCTGCCACTTGATTTCAGCcaaagctgcagcagcggtcACGTCCAACAGTCGTCGTCGGGTTTGCTGCCCTTGAACCCagtcacagccacagccacggCTACGGCAACGTCCACAGCGACGTCCACGTCCAATCCTCCGGGCTCTGGCTCTGCATCAGCATCTGTGTCcacggctgctgctccgctgctCATGCCGCCGCTGCCAGCGTTGCCCATCAAAGATGAGCCCATTGACACGGACGATGACTACCAGATGAAGATGATAGACGAGTCCGACGACATGGTCGATCCCACAATGTTCCTAGAGCGCTCCGAGCACGAGGGCGATATGCCGTTGATGGCCTCGGACTATGACTACACCGCCCAGCATTctctggccgccgccgccggactGCCACCGAATGCGGTGGCCAATGTGGCCGCCGCCGGGGACTCCAAGGTGGCCAGCTGCCGGGCCTGCAGCCTGCAGTTCTCCACCCGAGCCAATGCCCGTCGGCATGAGCGCAATTTGCACCCGAACCTCTTCCAGCTCTCCACGGACTCGCTGCACAACACGACGGTGACGAAGCCAACGCCCGCCTTGGCCGCCGCATTGGAAATGCAgcgagcggcagcagcggctgcgaCCGCAGAGGCGACGCGTGCTGTGGGCGCTGCTGGGGGAAATATAACGCCACAGAAATACCGTCAGGTGGTGATGAATGCGTTCATCAAATGCGAGGGCGGCGGCTATGACTATGAGAATCCGGAGCAGTATCGCCCGCTGCTCGGCCACGACAAGGTGGAGTTCATCGAGCAGAACGAGGAGTTCCTCGAGCAGTACCAGACGATgacctgccgctgctgcagcaagTACTTCAGCACGTACAAGAACTTCATGGCGCACGTGCGCAAGAAGTATCCGCTGCTGCCGCGCAACCTGTGCTTCAACTGCCTCAAGATGAACGACTCCAAGGCGCTGTTCATCTCGCATCTCAAGAAGCGCAACTGCATCAATCTCTACCGCGTTTTGAATGCGCTGCGCGGCAAGGCAACAGTGCTTCCCCTCgcggatggggatggggatgtggATGGAGATCAGGCACAGGATGATGGAGCCACCACAGTTGTTGCGGTGGCAGATGCCGCCGGTGCAGGCACAATGGCCAGTCCCACGGTTACCATTAGCGGAGGGGAGACCACCACCGGCGGCGGCACTCCCAGCGGCGGTGAGAAGCTGCGCGCCAAGGAGCTCCTCGTGAACAAGCTTTACGAATGCAAGCTCTGCCCCAAGGGCTTCCGCACCAAGCACGAGTTCCGCACCCACGTCTACGACAAACATGCGGATGTGCAGCGCAAGGACAACAACTCGATTCAGTGCAGCTTCTGCGGCATGGACTTTGCCGATCCGGTGGACAGGCGTCGCCACTACAACAACATGGACTGCATTGTGCGGCTGCGCTGCATGACGTGCGATGCCAAGCTGGAGACGCACCAGCGCTTCCTCGATCACGTCTACCAGGATCATTTGGGAGGCgtgggcggtggcggtggcggtgccAGCAGTGATAATGCCTCCACAACGGGCAGCGGCCTGGCCAGAAGCAACAGCATGGAGCATTCGCCGGGCAAGAGGAGTCTGCTGGGTGCCCTCGGGATTGGCGTTGGTGGCTCATCGGCGGAAGAGTCACGCAGCAGCAGTGTGGCGCCCACGCTGACATCCACGCCCAAGCCACAAGCGGCCACAACAACAGCGGGAGGAGCCGCTCCCAGTTCAACAACAACGAATCAACGTGCTGCTGATGCCGCACCCAAATCCCAGTACTTTTCGCGAATGCCCCAGGTGTGTCCCATTTGCGGACAGCAatacaacaactacaacaacgtGCTGCGCCACATGGAATCGAAGCATCCGAACAAGCTGCCCGAGACATATAAATGCGTGCGCTGCGGCCTGGGATATCCGCGAATCTCCTACCTGCGGGAGCACATGATCAATGTGCATGGCGTGGACAAGAATCGTCACTCGGGCGGCTTCGAGTACATTGTGAACGCGGATGCCGTGAAGCTGGCGGATGGCAGCACGCCGAATGTGTACACGGGTCGCTACGACTATGTGATGAAGGATCTGATGTCGATAACAAATGGTGGGACCCTCGACGaagacgaggaggaggcggcagcAGGCAGCtgCCCCATTTGCAATGCCGTCTTTAGCAACAACATTGGCCTCTCCAATCACATGCGCTCCCATTACACAGCCGCCAGTGTGGTGACCGCAGCTCTGGCGGCCGCCAATCGCATGACACCCAAATCACTGACCATAACAGCCACGCCAGCGGTAGCGGTAGCGGCAGCCGAGGCAAGTCCAGAGGCATCATCTAACCCGGCGCCAAGCAATGTTGTGCCGCCGGCAATGGCCAATCAAACGCCCCAGGAGCAGGCCGTATTTCGTAGGAGCTTGGATCAGGCGGCCGACCGTCGCTTCCGGCGAATGCGTTGCCGGATTTGCCAGCGGCGCTTCAGCTCAAAGAAATCGTATCGCTACCACATGCTGACGGACCATCAGGTGCAGAATGTGCAGTTCATCAAGTGCAAGCTGTGCAACGCGGAGTTCGCCTACGAGAAGGGTCTGAAGGTGCATCTGTTCAAGGTGCATGGGCGGGCGATCAAGGACGAGATGATCATCAAGCAGTTTGAGTGCGAGGTCTGTTCGATTGTCTACAGctcggagctggagctgcagcagcacaagcGGAGTGTCCACAAGTTGACCTCTGCATCGGCCTCAGCCTCTgcttctgcctctgcctcggcATCCGCCTCCACTTCCTCGAAGATGGAGGATGACGTTTTGATGGAAGAGGATGGAGGGAAGCCAGCAGTTGCAGGCGCAGATCAACAAGCCGGCGATCTGTCCACCGCatcgtcggcggcggcgggacTGGGAGTGGGTGCGCCGCTGTACTGGTACCAGTGCAAGTACTGCCCCTCGAACTTCAACACCAACAAGAAGCTGGCCATCCACATAAACTCGCACGACGAGTTTGACTCGAATGACTACTCGTGCAAGGATTGTGGCAACGTCTACAGCGGACGCAAGAGTCTATGGGTGCATCGCTACAAGAAGCATCCACAGGTGCCAGACCCGGCCGAGTGCTCGCTGTGCCGCAAGGTCTTCTTCGATCGCCAGATGCTGGACAATCACACGCCCACCTGCAACCGCAAGCCCATCACCTCGACAGgtgcccaccagcagcaggattcctcgctgcagcagcagcaggcggcccTGCAACGCGCTGTTTTCCGTCACAAGACGggtgacgatgacgacgaggaggGGGATGAGCAGCtgggccagcagctgcagctggaggagggcGATAGCAATGGGGCAGCAGCTGTGGCAGCTTCTGTCGTCCaggctactgctgctgctccactgAAGATCCGCATACCGGAGGTGGCCTGCACTATTTGCGGGGCGCGATTCACCGATCAGGAGCACTTTAGCAAGCACATCCAGAAGCATGAACAGGAGCTGTATGTGGACAATCCGCTGGCAGCGATGTTTGACGATGGGCCGGCGGATGCTGGGCAGTTCCAGGTGGAGCGGCAGAATGAGAATGGGGAATATGCGTGCGATTTGTGTGCGAAGACGTTCCCCCAGGTGATTGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCGTTTTTCGGCTTGtgcagcgaggaggaggatga
Protein Sequence
MGMGMGQGQGQGLGMGSGKRPAGTDGRQRERDGDPGRAQNSSGFTLGTRLPGLGLLGCQYFCIGFSFFGISLYIIFFFAWPWPRLGSSCDPHRISSISLQSRFSILWHSWITSQDRLSLHICHACISYLNSWQSFKNRCLSSQTKQRQWLDTSNNNKSKLFNYLDLNSAENGGGASSDHQQQQHSQQSENELDSAAEKATTAAATTTAANILDGIPSLKKRKSLTVYPKLYLPLDIAVPPLPPIAASAPPAPPPAPAAVPAAEQPLLSGFSSGLTGIVAGGVGVGGGMESLSLSLPLDFSQSCSSGHVQQSSSGLLPLNPVTATATATATSTATSTSNPPGSGSASASVSTAAAPLLMPPLPALPIKDEPIDTDDDYQMKMIDESDDMVDPTMFLERSEHEGDMPLMASDYDYTAQHSLAAAAGLPPNAVANVAAAGDSKVASCRACSLQFSTRANARRHERNLHPNLFQLSTDSLHNTTVTKPTPALAAALEMQRAAAAAATAEATRAVGAAGGNITPQKYRQVVMNAFIKCEGGGYDYENPEQYRPLLGHDKVEFIEQNEEFLEQYQTMTCRCCSKYFSTYKNFMAHVRKKYPLLPRNLCFNCLKMNDSKALFISHLKKRNCINLYRVLNALRGKATVLPLADGDGDVDGDQAQDDGATTVVAVADAAGAGTMASPTVTISGGETTTGGGTPSGGEKLRAKELLVNKLYECKLCPKGFRTKHEFRTHVYDKHADVQRKDNNSIQCSFCGMDFADPVDRRRHYNNMDCIVRLRCMTCDAKLETHQRFLDHVYQDHLGGVGGGGGGASSDNASTTGSGLARSNSMEHSPGKRSLLGALGIGVGGSSAEESRSSSVAPTLTSTPKPQAATTTAGGAAPSSTTTNQRAADAAPKSQYFSRMPQVCPICGQQYNNYNNVLRHMESKHPNKLPETYKCVRCGLGYPRISYLREHMINVHGVDKNRHSGGFEYIVNADAVKLADGSTPNVYTGRYDYVMKDLMSITNGGTLDEDEEEAAAGSCPICNAVFSNNIGLSNHMRSHYTAASVVTAALAAANRMTPKSLTITATPAVAVAAAEASPEASSNPAPSNVVPPAMANQTPQEQAVFRRSLDQAADRRFRRMRCRICQRRFSSKKSYRYHMLTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGRAIKDEMIIKQFECEVCSIVYSSELELQQHKRSVHKLTSASASASASASASASASTSSKMEDDVLMEEDGGKPAVAGADQQAGDLSTASSAAAGLGVGAPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQVPDPAECSLCRKVFFDRQMLDNHTPTCNRKPITSTGAHQQQDSSLQQQQAALQRAVFRHKTGDDDDEEGDEQLGQQLQLEEGDSNGAAAVAASVVQATAAAPLKIRIPEVACTICGARFTDQEHFSKHIQKHEQELYVDNPLAAMFDDGPADAGQFQVERQNENGEYACDLCAKTFPQVIALKVHRKWHFRGDSKQVSVFRLVQRGGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-