Dbur004862.1
Basic Information
- Insect
- Drosophila burlai
- Gene Symbol
- Bcl11a
- Assembly
- GCA_008042655.1
- Location
- VNJT01017185.1:489-3431[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.01 0.79 10.4 0.1 2 23 26 47 25 47 0.96 2 18 0.0029 0.22 12.1 0.8 1 23 128 151 128 151 0.97 3 18 0.00076 0.058 13.9 1.1 2 22 162 182 161 182 0.94 4 18 0.068 5.2 7.8 4.4 1 23 191 213 191 214 0.94 5 18 0.0015 0.12 13.0 1.5 2 23 234 255 233 255 0.97 6 18 1.5e-05 0.0012 19.3 5.6 1 23 262 284 262 284 0.98 7 18 0.016 1.3 9.8 1.9 1 23 420 443 420 443 0.91 8 18 0.013 1 10.0 0.6 2 22 451 471 450 471 0.93 9 18 0.018 1.3 9.7 3.3 1 23 480 503 480 503 0.93 10 18 1.5e-05 0.0012 19.3 1.5 2 23 523 544 522 544 0.97 11 18 5.4e-05 0.0042 17.5 0.4 1 23 551 573 551 573 0.98 12 18 0.051 3.9 8.2 0.0 2 21 600 619 599 620 0.92 13 18 0.027 2.1 9.1 4.2 1 23 666 689 666 689 0.96 14 18 0.0036 0.27 11.8 0.6 1 23 726 749 726 749 0.97 15 18 0.00025 0.019 15.5 1.4 1 23 774 797 774 797 0.97 16 18 3.2e-06 0.00024 21.4 0.2 2 23 824 845 823 845 0.95 17 18 0.085 6.5 7.5 0.3 9 23 852 866 850 866 0.93 18 18 0.00041 0.032 14.8 0.1 1 21 872 892 872 896 0.91
Sequence Information
- Coding Sequence
- ATGTGGCCGGAGAATCTGCACAGGCACGCCTGCTCTCATCGCCACCAGGAAGCGACGTCTGGCGGACGCCAGATCTCCTGCACCTTGTGCGACGAATTCCTGCCCACATTGGCCCAATTACGGATACACTTGGTTACCCACCAGAGTAACATGAGTGGCATCGATCCGGAGCACAGTTCCACATTCTTTCGGTCGTTCTATCCCAACGGCCTGGACAGCACCCCGGAGGAGCTGGGTGTCCGCATAGCCGAGGACTTCGAGGTGCAGGACTTTGATCGCTACTACAACGCCTGCACAGGCAGTGGCCAAGAGCTGGATCTCTTTGATTCCGAGACGGAGCAGAGCGGGGACGATCGGAATGAGGACGAGAAGCCGACGTGCCACACATGTCTGCTGTGTGGAGTGGTGACGAGCAGACTCACGACCCTGCTGCAGCACCAGAACAGAGCCCATTCGAAAGCGACGACAAAAGATTTGCCTTGTTCCTGCCACGACTGCGGTGCTAGCTTCATAAGTGATgccctgctgcagcagcaccgcCGGCGTATCTGCGCCAAGAAACATTTCCGTCACCACTGCCCGAGCTGCAATCTCCGATTCATCTGGCCGAGCAACTATGAGCTGCATCTGAAGACCCACCACAGCCACTTGGAGGAAGACCAACTCGAGGAGGGTGGTGAGCATCGGGACGCGAAGCTGCAGTGTGACGAGTGCGAAAAGGTCTTCATCTGGCACAAGGATCTGACGCGTCACAAGCGCTTGCACCTGCCGCAGTCGGCGCAGTTCGAGTGTACGCATTGCGACCGGAAGTTCCACCGCAAGGATGGCCTCAAGTCCCACTTGCGGGTCCATGCAGAGGCACAGCTGGTGGAGCAGCCTCTCGCATCCGACAGCAGCGGGGTGCTTGCCCTGCTCTCCCGTCCCCATGGCTGCAAGCAAATCCAATGCATGATCTGTCTCTCACGCCACTCCAAGATCTCTGATCTGCGAACCCACCTGGGCGCCCATCGATACGGCTTAAGCTTTGCCACAGAGACCGATATTTCCAGTATCTCAAAGTCTCTGTATCCGGAAGTGGAAACGGCCCTGGGCACTGATGAACTGGCGGAGAGAATTATGGCGGATATCGACCAAGGAGTGGAGCTGGATCGATTTATTTCCATCACCAATGAGGCTGGGTTGGAGCTCAGCTTGGACAGCAGCGAAACCGACACTGAAtccgaggaagaggaggaggaggtcccGTCCAGTCGGAACTACGCCTGTAATCTCTGTCCCACCGAGGTAAAGAGAAAGCATCTGCTTTTTGCTCACCAAGGGGAATGCCATCAGTGGGAGGAAGCTACGATCGTTTGCTCGCACTGCCAGGCTAGGTTTGTCAGCGAATCCCTGCTAGATCATCACTCCAGGACCTTCTGCGGCAACGTCCAGAAGCGCTTCCAGTGCCGCAAATGCCCGCTTCGCTTCCGCTGGCGTGAGAACCTGAAGCATCACCTTTATTTGTCCCATCAGCAGGCTGAGATGACGGCTGCAGAGGATTCTTCGCAGAATGCGGATGCCGAACTGCAATGTGGCGAGTGCCAGCGAACGTTCAAGATGCAAAAGGATCTCACACGGCACACCATGATGCACGCCCGGGAGGCGACGATCTATCGGTGTCGTTGGTGTGCTCGTCGATTCTACCGCTGGGCCAATCTCCTACAGCATATCGCACGGCACGGCATCCGGGCGAGTGAGTTGCACTATGCTGAGGCTCTCCTGGACGCCTATGGACATCCAGGCGGTCAGAAAACCGTGGAATGCCGGGTATGCAATGTCAGCTTCGCCAGTATCGCCGCCCTGCGTCTGCATCTGGAAACCATGCCGGCAGGGAGCCACCATGAGCTCTCCTCGTTGAAGAACTACTCGATCACCAACCAAATGGGCTTCGAGCTGGAGCTCCAGGACTCGGAAACGGATGAGGATCAGTCAAAGCCGCCCGGTGTGCCTGCCTACTACACGTGCGGCATGTGCCAGTTGAAGTGTGTACGTAAATTCGAGctgcaccagcaccagcaggcCATGCATCGGCTGGAGAAGATTCCCGACGGCTGCGATCAGTGCATCTTCAAGAGCGTCTGTCCCGATCTCATTGCCCATCACAAGAGGACGCAATGCGGTAACCAGGAGAAGCAGTTCACGTGCTCCCGCTGCGGCTACAAGTTCATGTGGGAGGCAAACCTGCTAACGCACATGCAGATGCAGCACGGAAAGACGGACGATCCGGACAGGGAGGAGGGAAGGGAGGCAGAAGCAGAGCCTAAGGCCGGGAGCCCGGTTTTCCAGTGTGCCCTGTGCCCCAGGAAGTACAACCGAAAGGACCGGCTTACAGCACATGTGAAAAAGTTCCATGGGCCCGATGGCAAGGGCCCCGAGGTGGTAAAGGTTCCCCCTACCAGAGCCGCCTCCCCCAAGGAACCGAAACGTTTCCTGTGCGCATTCTGCGGCAAGGCGgtcagctcctcctccaaccTGATCATTCACATGCGACGTCACACGGGCGAAAAGCCTTTCAACTTCACCCAGTCCAACGACCTGACACTCCACATCCGTCGGCACACGGGCGAGCGGCCTTACCAGTGTGGCATCTGCGGGGAACGTTTCATCCAGGGAACGGCGTTGAAAAATCATCGCCTGCAGCAGGGACACTTTGAGGAGGGTCAAAGTTCTGGGGAGCCAGCAAGGCGCACGGTTTTGGAACAGTTTACTGTATGA
- Protein Sequence
- MWPENLHRHACSHRHQEATSGGRQISCTLCDEFLPTLAQLRIHLVTHQSNMSGIDPEHSSTFFRSFYPNGLDSTPEELGVRIAEDFEVQDFDRYYNACTGSGQELDLFDSETEQSGDDRNEDEKPTCHTCLLCGVVTSRLTTLLQHQNRAHSKATTKDLPCSCHDCGASFISDALLQQHRRRICAKKHFRHHCPSCNLRFIWPSNYELHLKTHHSHLEEDQLEEGGEHRDAKLQCDECEKVFIWHKDLTRHKRLHLPQSAQFECTHCDRKFHRKDGLKSHLRVHAEAQLVEQPLASDSSGVLALLSRPHGCKQIQCMICLSRHSKISDLRTHLGAHRYGLSFATETDISSISKSLYPEVETALGTDELAERIMADIDQGVELDRFISITNEAGLELSLDSSETDTESEEEEEEVPSSRNYACNLCPTEVKRKHLLFAHQGECHQWEEATIVCSHCQARFVSESLLDHHSRTFCGNVQKRFQCRKCPLRFRWRENLKHHLYLSHQQAEMTAAEDSSQNADAELQCGECQRTFKMQKDLTRHTMMHAREATIYRCRWCARRFYRWANLLQHIARHGIRASELHYAEALLDAYGHPGGQKTVECRVCNVSFASIAALRLHLETMPAGSHHELSSLKNYSITNQMGFELELQDSETDEDQSKPPGVPAYYTCGMCQLKCVRKFELHQHQQAMHRLEKIPDGCDQCIFKSVCPDLIAHHKRTQCGNQEKQFTCSRCGYKFMWEANLLTHMQMQHGKTDDPDREEGREAEAEPKAGSPVFQCALCPRKYNRKDRLTAHVKKFHGPDGKGPEVVKVPPTRAASPKEPKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFNFTQSNDLTLHIRRHTGERPYQCGICGERFIQGTALKNHRLQQGHFEEGQSSGEPARRTVLEQFTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -