Basic Information

Insect: Drosophila borealis
Gene Symbol: salm
Assembly: GCA_035045885.1
Location: JAWNOR010000137.1:5038690-5045570[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.4e-06 0.0002 22.0 1.7 1 23 342 364 342 364 0.98

2 8 3.4e-05 0.0028 18.3 3.5 1 23 370 392 370 392 0.98

3 8 2.4 1.9e+02 3.1 2.5 5 23 635 653 632 653 0.84

4 8 3.5e-08 2.9e-06 27.7 0.2 1 23 659 681 659 681 0.98

5 8 0.0011 0.087 13.6 0.9 1 23 691 713 691 713 0.98

6 8 0.018 1.5 9.8 0.1 2 23 918 940 918 940 0.95

7 8 1.2e-05 0.00094 19.8 5.0 1 23 1071 1093 1071 1093 0.96

8 8 9.2e-08 7.5e-06 26.4 0.7 1 23 1099 1121 1099 1121 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.4e-06	0.0002	22.0	1.7	1	23	342	364	342	364	0.98
2	8	3.4e-05	0.0028	18.3	3.5	1	23	370	392	370	392	0.98
3	8	2.4	1.9e+02	3.1	2.5	5	23	635	653	632	653	0.84
4	8	3.5e-08	2.9e-06	27.7	0.2	1	23	659	681	659	681	0.98
5	8	0.0011	0.087	13.6	0.9	1	23	691	713	691	713	0.98
6	8	0.018	1.5	9.8	0.1	2	23	918	940	918	940	0.95
7	8	1.2e-05	0.00094	19.8	5.0	1	23	1071	1093	1071	1093	0.96
8	8	9.2e-08	7.5e-06	26.4	0.7	1	23	1099	1121	1099	1121	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAATCGCATCAATTACCGAAGCACAGGTACGCGCAGTGGCTCTTCTAATGGTGGCAGCTCGGTAGGTGCGGACTCTACAGGCGACAGCAGTCTGCTGGCCAAGGAGCTGAATGCGGACAGCAATAACAACGGCAGCGCAGCTGACGAAATGCCGGAGCCTGATTCGGCGTTACAGCTAGAATCGGAGACATCGTTGCCCTGCGCTGACCAGCCGGAGAACAGTAATGAGGCGCTGGACTTATCGGTTATCTCCGGCAGTCGCTTGCCAACAAGCGGGCACGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTGGCACAGTTTGCAGCCACTGCGCTGGCGGGCACGACTGATCCAAACGATTTGGCCATGGTGCAATCGACGATCTTCAATGTACAGCGGCAGCATctgatgcagctgcagctcatcCAGCACCTACAGAGTCAATTGAAAAGGGCGGGTGGCGTAGTAGCTGCGCTGAGTAGACCGGGTCAAAGTTATGCCGAACCTGAAGACgaagaagaggaggaggaggaggaggagccgCCGCCTCTGCCGCCGCTAAATCCTTCCAAAGAGCAGCCGAAACTAAATGGCGACGAAGCAGAGATTGATCATGAAAGGCTGGAGGAGAGTTCAAAGACTGATGAACAGGAAATGTCAATGGAATTAGAGGCAATATCCAATGAGTGCAATAGGGAACGAGAGGTGCTCCTGACCAAAATGGAACGCGAGCGTGAAATTGAGGTTGAGGCCGAGCGCGAGCTGGAGAGTGAATATAAGCCGATAATGTGCGACATCAGCTCTAGTCTGGCATCCAGTATCATCACCAATCACGACCCACCGCCGGCGCCCAATGAGCCCAACTGCCTGGAGATGCTGCAACGCCGTACAGAGGAGGTACTGGACTCGGCGTCGCAGAGCTTGCACGCCGCCCAAATGCAGGAGGAATATTCTGAATACGCCTCCAAGGAAGCACAGAGTCGCGGTGAGATCTTCAAGCATCGTTGCAAGTATTGTGGCAAGATCTTCGGCAGTTACTCGGCCCTGCAAATACACCTGCGATCCCACACCGGAGAGAGACCCTTCCATTGCAACGTCTGTGGCAGCAAGTTTACCACCAAGGGCAACTTAAAGGTGCACTATCAACGCCACACGCAAATCTTTCCTCCCATGCTTCTACCGCCAGTGGTCAATGGGGGGCCACCGCCGGCAACGCCCGAGCAGTTTGCCGCTCTGCCACCTATTCGTTTACCCTTTGTGACGCCAGCGCCCCTGGCACCGCCTCCGCCGCCTAGCGTAGGTCCACCCAGCGGGGATCACACACcgttggagcagcagcagcaggagccgcAGTCGTTGGCAATGTCGGGGCATCTACAGCAGGCCGAGGATCTAAGCAAACCGGCCAGAGAGATGTCGCACTCTCCCATGCAACCCGCGCAGACATCCAAGTCCCAGCCCGAACGGAGCAGAAATCAAAGTGCAACGGCGGAATCTGTCCAGCCGCCGGTAGTTTTCACCGAGAAACAGGAAAAGGACAAAACGAAGGACAGTCCAAAGCCAACGACGCCGCCGACGACGGCGAATCGTCGAAACGGCAGCGTACGTAAACGTCAGACGAGCAATGCGGGAAGTCCGCCAGGTGATGACCGCGAACATCCCGAGCATCTACAGATTGCCAAGCTAGTGCGTCGCTCTTCGGCCAGTCGCGATGGGACTGTCGCACTGCCGGGCGAGTACTCATTGGCTCAGATGGAGCGCATCATTGACAAGTCGTGGGAGGATCTCATTGAGATAGATAAGACATCGGAGACGTCGAAGCTACAGCAGCTGGTCGACAACATCGAGAACAAGCTGACCGATCCGAATCAGTGCATTTTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCACTGCAGATGCATATACGCACTCACACTGGAGAGCGTCCTTTTCGCTGCAAGATCTGCGGACGCGCATTCGCCACCAAGGGCAACCTGAAGGCGCACATGAGCATACACAAGATAAAGCCACCCATGCGCAGTCAGTTCAAGTGCCCAGTATGCCACCAAAAGTTCTCCAACGGCATCATCCTGCAGCAGCACATACGCATCCACACCATGGACGACGGAAGCGGCAATCAGGGACATGGTCAGGGTCAGAGTCAGAGCATGGGGCTTGGTGACGCTGACCGTTTGGGTATTGAGGATCAGAACTCAAACAAGTCACTGGGCACCTCAGACACTTTGGACTTCTCAACCACCATTTCGGATCACTCCGGCCAGCGGTCGGAGTCTTCGCAAGGAGGCGATTTTGACGAGTTCATGACCATGGACAGCACTGATGATTCGCGCGACAATTCAAGTGCAGCCACGGCGACACTTCTTGACAGAGATAGACGGACTGGCCACGATGACGAGCGCTCCAGATCGGATTTGGAAGGTGGTGGACGTGAGAGCACCAGCGGCGAGATGCCAGCAATGGACCTTTCATCGCCCTCATCGTCGTCGgcggcaacagcggcagcggcgcgGCTCTTTGGAGTCGGTAACAGTACAACAGCTGTTGGTACTGGAGCCCTACCGATGCTTGGCATGCCCATGCCTCCGAATCTGTTACTGATGGCGGCGGCGCGCGATGAGATGCACGCGCTAGGGCAAACGCATGCCAAGTTTCCGTTGCTGCCCTTCGGACCGCTCGGATTAATGGGTCTGCAGCCGCCCCCAAATGTGTGCAATTTGTGCTTCAAGATGCTGCCCAACCAGGCTGCCCTGGAAAGTCATCTACAGAACGAACATGCCAAAGAAATGACGGTTCCTTCCGGCCGAGCCCACTGCAACGAAACTATATCACCATATGGGGCAAAGctCACTCTCAATCCAAATCTTTTTGCGAAGAAGCCGAAGCAATCGCAGGAGATGGCGCCAGCGGAGCCAGTCACGCCATCGGCGGCACCCATTAAAGAGGAGCCCGACTCCGATCGGCTGCAAGTCGACGAGGGTGGCGATAACGGTACAAATACAGCCGGTACCAACTATCAGCACGAGGCAGCCGCCGATGCGGAGCAGTCTCTGATGAAGATGCAGTTGCATGCTCATCGCTTTCCAGCTAGTCCGCTCGACTTTCAGCAGGCACTTATGTCGGCCGGCCCGCCTAGCTCTAGCCTCGATCCGCCGGTTAACAACAAGCACTTCTGCCATGTCTGCCGACGCAATTTCAGTTCTAGCTCAGCGCTGCAGATTCACATGCGCACTCATACCGGGGACAAGCCCTTTCAGTGCAATGTCTGTCAAAAGGCCTTTACCACTAAGGGTAACCTTAAGGTTCATATGGGCACGCATATGTGGACGAATCCTACATCGCGTCGGGGCCGCCGTATGTCCCTAGAGTTACCGATGCGCCCTGGACCTGCACCGGGCGCTGCACATGGAGCGCCTTCTGCTGAACAGGAGTTCATGCAGCGCCGACCGGAACTCTTTTTTCCCTATCTGCCACCCTTCTTCAACGGAATTCCACCCAAGcccGGTGAATTAAGTCCTGGCGCGTTTACCAACATACCTCCACCGCACTTTGCAAATGGAGCCAAGTATCCATATCCGCCAGGTCTGCTGAGTTTTCCAAACTTCTTAGGTGGCGTTGGTCTTCATCACCAGTATGCCCATGGAGTGGAGCGCAGTAACAGCAAGTCACCAACGTCGGAACCGGCGCAGAGCCCTGCATCCCGCGAGGATGACGGAGTTTTAGGTAACACCATCTGGCATCCGCTGAGCAGTATCAAGAtggaaaacaatcaaaatgaGGGCATTGGCAATCAGAGCGAAAAGGAGCAGGAGGATAATGAAGGCGTGGATGTTGACGCCGAGCCTGAGGCAGGAGCCGAGGAGTCGGAATTTCAAGGCGGTGAGAAATAG
Protein Sequence: MCSIFRNRINYRSTGTRSGSSNGGSSVGADSTGDSSLLAKELNADSNNNGSAADEMPEPDSALQLESETSLPCADQPENSNEALDLSVISGSRLPTSGHVALEALQHTKVAVAQFAATALAGTTDPNDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRPGQSYAEPEDEEEEEEEEEPPPLPPLNPSKEQPKLNGDEAEIDHERLEESSKTDEQEMSMELEAISNECNREREVLLTKMEREREIEVEAERELESEYKPIMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPVVNGGPPPATPEQFAALPPIRLPFVTPAPLAPPPPPSVGPPSGDHTPLEQQQQEPQSLAMSGHLQQAEDLSKPAREMSHSPMQPAQTSKSQPERSRNQSATAESVQPPVVFTEKQEKDKTKDSPKPTTPPTTANRRNGSVRKRQTSNAGSPPGDDREHPEHLQIAKLVRRSSASRDGTVALPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGNQGHGQGQSQSMGLGDADRLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATLLDRDRRTGHDDERSRSDLEGGGRESTSGEMPAMDLSSPSSSSAATAAAARLFGVGNSTTAVGTGALPMLGMPMPPNLLLMAAARDEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPNQAALESHLQNEHAKEMTVPSGRAHCNETISPYGAKLTLNPNLFAKKPKQSQEMAPAEPVTPSAAPIKEEPDSDRLQVDEGGDNGTNTAGTNYQHEAAADAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPAPGAAHGAPSAEQEFMQRRPELFFPYLPPFFNGIPPKPGELSPGAFTNIPPPHFANGAKYPYPPGLLSFPNFLGGVGLHHQYAHGVERSNSKSPTSEPAQSPASREDDGVLGNTIWHPLSSIKMENNQNEGIGNQSEKEQEDNEGVDVDAEPEAGAEESEFQGGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00475377;
90% Identity: iTF_00617065;
80% Identity: -