Basic Information

Insect: Drosophila bocqueti
Gene Symbol: -
Assembly: GCA_018151655.1
Location: JAECXF010000004.1:2246124-2248065[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0021 0.16 12.5 8.2 1 21 325 345 325 347 0.96

2 8 1.1e-05 0.00081 19.7 2.5 1 23 353 375 353 375 0.98

3 8 5.6e-06 0.00043 20.5 3.0 1 23 381 403 381 403 0.98

4 8 9.5e-05 0.0072 16.7 0.7 1 23 409 431 409 431 0.98

5 8 1.3e-05 0.00095 19.5 0.5 1 23 437 459 437 459 0.97

6 8 1.4e-05 0.0011 19.3 0.2 1 23 465 487 465 487 0.98

7 8 1.4e-07 1e-05 25.6 0.8 1 23 493 515 493 515 0.98

8 8 1.7e-06 0.00013 22.2 1.2 1 23 521 543 521 543 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0021	0.16	12.5	8.2	1	21	325	345	325	347	0.96
2	8	1.1e-05	0.00081	19.7	2.5	1	23	353	375	353	375	0.98
3	8	5.6e-06	0.00043	20.5	3.0	1	23	381	403	381	403	0.98
4	8	9.5e-05	0.0072	16.7	0.7	1	23	409	431	409	431	0.98
5	8	1.3e-05	0.00095	19.5	0.5	1	23	437	459	437	459	0.97
6	8	1.4e-05	0.0011	19.3	0.2	1	23	465	487	465	487	0.98
7	8	1.4e-07	1e-05	25.6	0.8	1	23	493	515	493	515	0.98
8	8	1.7e-06	0.00013	22.2	1.2	1	23	521	543	521	543	0.99

Sequence Information

Coding Sequence: ATGATGTGCGGCAAGTCAGGCGGAGGCGGAGGCGCCAGTGCGTTGGTGGTGCTCAACTGCAGGACGTGCACCCGTGCCTGCAAGCAGCACAAGCCGCTGCAGGAGGAGATCGAGCTGGGCGCCGAGGGCAGCACCACTCTGGCCCGAATGCTCCTTTACTGTTCCGGCCTCTCCTTCGAGCCGCAGGACGGCGCCGCCATGCCCCAGCACATCTGCCTCAATTGCCTGCAGCTCCTAGAGCAGGCGTTCAACTTTAAGCGCATGGTGATTGACTCGGACGAGCTGCTGCGCATTGGCCTGGACGAGGCCCATGGAACCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGAAGCCAACGAGGAGTACGTGATGATTGAGATGCTGAACGAGGAGGAGCAGGAGCCAGGCACTATCACGGAGCAAGATGCCGAAACGGAGCACGACCATGCTCGACGCGGTAAGCTGGAAATGGTGGAGATTGCTAGCGGCGTGGCGGAAGAGTTTGTCATCGAGGAAGTGGCCGAGCAGGATGATGTGGAGGAGGTGATGCCGGATGAGGAGGAGGGGCAGCAGCAGCACCAACAGCAGCAGCAGCACGGGGAGGAAGAGCATCATCACATCACCATGGAGGGCGTTCATGAGTTCCAGCCTGCCGAAGTGGAATATGTGACAATTAAGAATGAATACGAGACGCTAGTTACGGAGGAGGATGAGATCGAAGTCATGGACAATATGGGTGCCCATGGCGAGATCATTGAGGGACAGATGATTGTGATACCCGTGGAGGGAGCCATAGACGAGGTCATCACCGAGGAGGCACTCGAAATGGAAGAGGATGAGCGTGAAGAGCATTTGCTGGCTGACACAGACGATCTATGCACCGAGGAGGACTTCCTGGAGGAGTCTTTGGACTCCTCCACGCAAATACCCACCACGGGCGAGACGCTGCCTTACGTGTGCCACATTTGCCGCAAACCGTTCCGCCAGCAGTGCCGCCTCAACCAGCACATGCGCTGCCATGTCGCTGAGAAGCACTTCGAGTGCGAGGAGTGTGGCAAGCGGCTGAAGCATCTGCGCAACTACAAGGAGCACATGCTGACGCACACCAACGTCAAGCCGCATCAGTGCAACATCTGTGACCGCTTCTATCGCACCACCTCCAGCCTGGCGGCGCACAAGCGTACGCATTCCGAGGAGAAGCGCTACAGTTGCGACGAATGCGGTCGGGGATATGGAGCCCTGGATCATCTGCGGCGCCACAAGCTAACGCACACCGGCGAGCGTCCCTATGCCTGTGATCAGTGCGACAAGGCGTACTACGATTCGTCCTCGCTGCGACAGCATAAAATCAGTCACACCGGCGAGAAGGCCTTCACCTGCGAAATCTGCGGCGTTGGCCTGTCGCAAAAGTCCGGCTACAAGAAGCACATGCTGGTGCACTCTGGCGCAAAGCCACACAAATGTCCCATCTGCGGCAGGGCCTTCACATTCACCAGCAACCTCAATGCCCATGTGCGGCTGCATTCGGGCGAAAAGCCCTTCAAGTGTGACATCTGCACCAAGGCCTTTCCCACCAAGAAGCGTCTCAATAGTCATCTGCGAGTGCACAACAAGGAGGCGCCCGTGACGGCTGCTGTCTCGCCGCAAACCATGGATAATCGTAGAAAAGCTGTGGCAGATCTACGATCTATCCGTGGAGGAGGAGGAGGAGCATCAGCAGCCACTCTTCATTTACCCGATGTACCTGAAGTAGTGCCCACGATATCCACATCCAAAGTGGTTGTGGTGCTCTGA
Protein Sequence: MMCGKSGGGGGASALVVLNCRTCTRACKQHKPLQEEIELGAEGSTTLARMLLYCSGLSFEPQDGAAMPQHICLNCLQLLEQAFNFKRMVIDSDELLRIGLDEAHGTTXXXXXXXXXXXXXXXGEANEEYVMIEMLNEEEQEPGTITEQDAETEHDHARRGKLEMVEIASGVAEEFVIEEVAEQDDVEEVMPDEEEGQQQHQQQQQHGEEEHHHITMEGVHEFQPAEVEYVTIKNEYETLVTEEDEIEVMDNMGAHGEIIEGQMIVIPVEGAIDEVITEEALEMEEDEREEHLLADTDDLCTEEDFLEESLDSSTQIPTTGETLPYVCHICRKPFRQQCRLNQHMRCHVAEKHFECEECGKRLKHLRNYKEHMLTHTNVKPHQCNICDRFYRTTSSLAAHKRTHSEEKRYSCDECGRGYGALDHLRRHKLTHTGERPYACDQCDKAYYDSSSLRQHKISHTGEKAFTCEICGVGLSQKSGYKKHMLVHSGAKPHKCPICGRAFTFTSNLNAHVRLHSGEKPFKCDICTKAFPTKKRLNSHLRVHNKEAPVTAAVSPQTMDNRRKAVADLRSIRGGGGGASAATLHLPDVPEVVPTISTSKVVVVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00524554;
90% Identity: iTF_00492377;
80% Identity: -