Basic Information

Insect: Drosophila bocki
Gene Symbol: -
Assembly: GCA_008042715.1
Location: VNJY01003362.1:29303-32110[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00022 0.016 15.5 2.0 1 23 215 237 215 237 0.98

2 8 3.6e-05 0.0026 18.0 1.4 1 23 269 291 269 291 0.97

3 8 0.051 3.7 8.1 0.4 1 19 299 316 299 322 0.81

4 8 0.00068 0.049 14.0 0.0 3 23 329 350 328 350 0.96

5 8 7e-05 0.0051 17.1 3.5 1 23 356 378 356 378 0.97

6 8 0.0047 0.34 11.3 0.2 1 23 385 408 385 408 0.95

7 8 9e-05 0.0065 16.7 2.2 2 20 415 433 414 436 0.91

8 8 0.023 1.7 9.1 9.1 1 23 442 465 442 465 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00022	0.016	15.5	2.0	1	23	215	237	215	237	0.98
2	8	3.6e-05	0.0026	18.0	1.4	1	23	269	291	269	291	0.97
3	8	0.051	3.7	8.1	0.4	1	19	299	316	299	322	0.81
4	8	0.00068	0.049	14.0	0.0	3	23	329	350	328	350	0.96
5	8	7e-05	0.0051	17.1	3.5	1	23	356	378	356	378	0.97
6	8	0.0047	0.34	11.3	0.2	1	23	385	408	385	408	0.95
7	8	9e-05	0.0065	16.7	2.2	2	20	415	433	414	436	0.91
8	8	0.023	1.7	9.1	9.1	1	23	442	465	442	465	0.96

Sequence Information

Coding Sequence: ATGCATTGTCCGCAATTAACGCTGCAGTCGCAGGATCAGGCGGGAGCGTCTTTGAAGCCATCGCACCACTTGCCCATGTCCATGTCATTGGAACACAGGGATGCGAAGGGCAGCCAGGTTATTGGCAATGCCAATGTGATCATGCCAAGCGGCAGCTCCGGTCACGCCAGCGAGATTCAGCTGCACCAGCAGCAAAACCACTACAACTCAAGCAATAATCCCCTAAGCATGATGGGTGGAATGatgcaccaacagcagcagcagcagcatgtgAGCatgcaacaccaacaacagcatcagcagcatcagatGATGCCGGGGCAGGGGTTTCCACAGCATGGAACCTCCATGATGGTCAACCGTCAAATGCCCGCTCTGGCTGCTTTGTCCAATCTGGGCGACACTCCTCCTATCGGCAGCCAGTTAAACTCCTCCCTGGAGCTGGACGACAACGACCTGTCGGGCGACGAGGATGACGACGACCTGGAGCATGATCTGGACGAGCTGGAAGCGGCCAAGCAGCAGCTGATTGATGGCGGCAGCAGTAGTAGCACCTCCCTGCAGGCGCCGCCATCGCAACACGGCAGCGGCAGTGGAGGCAGCGGAGGGCAGACGCCCGGCAGCAAGAAGAACAAGCCCAGCTACAATTGCCTGCTGTGTCCCAAGTCGTATCGCAAGAGGAAATCCCTGCTTGACCACTACAAGATGCATCCTGGTTTCTGTCACGATTGCGGACAGCCCAACGGAAATACGTTAGAGGAAGTAATCCTCCACAACAGGACGATGCATGTAAAGGAGTTTCCTTTCGTGTGCGAGACTTGCGGAGAGTCGTACTCGCGAAAGCAGCAGTTCCACGCCCACGTGGAGTCGCACAACAAGAAGGAAATCAAAAcATTTCCCTGCGGAGAATGCGGGTTGAAATTTCCGCAGAAGAAGCTACAGCAGCACTTCGAGGAGACGGGCCACAAGGCCGACGGGGCCATTTGCGAGGTGTGCGGCGAGGAGTTCCAGTCGAAGAACGCCCTATACCAGCACATCATTCGCGTTCACAAGCGCGACAACTTTTTCGAGTGCCACATTTGCCATAACCGCTTCACGCTAAAGGCGAACCTGGAGCGTCACGTGCAGCTGCACACCGAGGTTAAACGGCCCTACGTGTGCGACCTGTGCGGCTCGTCCTACTACACATATCCCGCGCTCAAGGAGCACTATAGCAATGCCCATGTCGATGTCTCCGAGTGCAAATGTACGCTGTGCGGCAAGCGCTTCGGATCGGCCAAGTCGCTCCAAAGGCACCTGCCATCGCACTCGGAGGAGCGTCCGCACTGTTGCAACTATTGCGATCAGACCTTCAAGTGGAAAACGCATCTAGTGCGCCACAAGCAGACGACGCACGGAAACGAGCCGCCGCCTCCTAAGAAGGGAAAGCAGCGCTTCCCCAAGGCAAACGAAGAAGCAGAAATGGCTTCCCTGCCGGATATGCCTGGACCGCCGCCTGTAAAGGCCAGCAAAAAGGCGGTGACGAGTAAGGCGAAAGCGCAAGCGGCAGTTGCCGCGGGAGGAACCTCCCAGttgcagcatcagcagaagGGCGTTGCAGCCACACCgacgccaccgccgccggtgTCTACGACACCGGGATGCATGCAACAAGATCAGTTTAATGCGGCCATggtcagcagcaacagctcgCAGTCCTCCACGGCGTCCACATCGCAGCATTCGGTGTCGACGACAAGTGGAGCTCAAGGATAA
Protein Sequence: MHCPQLTLQSQDQAGASLKPSHHLPMSMSLEHRDAKGSQVIGNANVIMPSGSSGHASEIQLHQQQNHYNSSNNPLSMMGGMMHQQQQQQHVSMQHQQQHQQHQMMPGQGFPQHGTSMMVNRQMPALAALSNLGDTPPIGSQLNSSLELDDNDLSGDEDDDDLEHDLDELEAAKQQLIDGGSSSSTSLQAPPSQHGSGSGGSGGQTPGSKKNKPSYNCLLCPKSYRKRKSLLDHYKMHPGFCHDCGQPNGNTLEEVILHNRTMHVKEFPFVCETCGESYSRKQQFHAHVESHNKKEIKTFPCGECGLKFPQKKLQQHFEETGHKADGAICEVCGEEFQSKNALYQHIIRVHKRDNFFECHICHNRFTLKANLERHVQLHTEVKRPYVCDLCGSSYYTYPALKEHYSNAHVDVSECKCTLCGKRFGSAKSLQRHLPSHSEERPHCCNYCDQTFKWKTHLVRHKQTTHGNEPPPPKKGKQRFPKANEEAEMASLPDMPGPPPVKASKKAVTSKAKAQAAVAAGGTSQLQHQQKGVAATPTPPPPVSTTPGCMQQDQFNAAMVSSNSSQSSTASTSQHSVSTTSGAQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -