Basic Information

Insect: Drosophila bocki
Gene Symbol: -
Assembly: GCA_008042715.1
Location: VNJY01000136.1:12263-14103[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.1 6.6e+02 1.0 0.3 2 22 363 383 362 385 0.76

2 7 7.3e-05 0.0052 17.0 1.9 1 23 392 415 392 415 0.97

3 7 8.4e-06 0.0006 20.0 2.9 1 23 420 442 420 442 0.98

4 7 0.00028 0.02 15.2 0.2 2 23 449 471 449 471 0.90

5 7 8.5e-05 0.0062 16.8 2.0 1 23 477 499 477 499 0.99

6 7 2.2e-05 0.0016 18.7 3.4 3 23 507 527 506 527 0.97

7 7 3.4e-05 0.0024 18.1 0.8 1 23 533 556 533 556 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.1	6.6e+02	1.0	0.3	2	22	363	383	362	385	0.76
2	7	7.3e-05	0.0052	17.0	1.9	1	23	392	415	392	415	0.97
3	7	8.4e-06	0.0006	20.0	2.9	1	23	420	442	420	442	0.98
4	7	0.00028	0.02	15.2	0.2	2	23	449	471	449	471	0.90
5	7	8.5e-05	0.0062	16.8	2.0	1	23	477	499	477	499	0.99
6	7	2.2e-05	0.0016	18.7	3.4	3	23	507	527	506	527	0.97
7	7	3.4e-05	0.0024	18.1	0.8	1	23	533	556	533	556	0.97

Sequence Information

Coding Sequence: ATGGAAACGTGCGGCCTTATTTGCGTGAGCGGGGACTACGAAAAGTTCCTGGTGCGCTGCTCCCAATGCCCCACGGACATGGAGCTGGCCCAGTGGCCAGAGTTCGTCCTGCACTTTCGGAACATGCACACCGCGCCGCTGGAGCAGAAAGTCTTTAAAGAGGAAATACCTGAAAAATGTGACCTGGAATTCCAAGATGAAACATTTGAGGTGGAAGAAGTTATGGTGGATGATGACTCGAGCACGGAGGAATCAAATACAGAAGAAGATATGAATGTAGAAGCACTCGACTCTTCGCCTGATGAGGCGGCAGAGGAGTCAGAGGCCTCCGGTGGCTCAGATCAGGAGGAGGAACTCTCTGAACCTCCTGGTGAGAATGCCGACACAAGCCCTACACCTTCTTATAAGTTCCGTCCCACCTTCTTTCGCCGGGATCCTCGAACGGTTAAATTCATAGAGCTCTACAAGGCACATCCGTGCCTCTGGGATTCCAAACACAATGACTACAAGGAGCCCAGTGCACGCTCCAATGCGTTAAAACAGATGCTTACTTCGTTGGAAACAACTGTGTCAGTTGTTCTCAGCGAGGTTAACTTGAAAATGGCCATCAAAAAGTTGCATACACAATACAACACCGTTCAGAAGCGGGTGCTGgcgaaaaagcaaaagccCCAGTCCCTGGCCTACAATGTGTACACTCTCTGCAGCTTCCTAAAAGACAGCCGCATGCCGGAAGACCGGGAACAGGAAGAAGCTGGCAAAAGCGGAAAGATTCAGCTAGATTTTTCAAAGAAGAACAAGCTTACAACAGAGCTGATACAGATGTACTTAAAGTTTCCACAGCTTTACGATCCCGAGCACAAGGAGTTCTCCAGCATGAGCTCCCGGAAGCAAGCATACGAAATTATGGCGGAGGAGATCTCAGTGCCCAATGAGGAGGACATCAGCAGTGATGACATATTTCGCGCAATCAACTGTCTTCGTCAGTGGTACTACAAAACCATTAAGGTTGCCACTAAAACCGGGGCGGAAACGTTCTATTCGCAGATGTGTCAGTTTCTGCCGCCCAAATTCAAACAGCGGCTCGTCTGCGAGATTTGCCACTCGGTTGTGTCCTCTGATCTAGTACTGCAGACGCACTTCTTTAAGGCGCACAACATCGGCGAGCTGCCGTTCAAGTGCACCCAATGCAGTCGCAGTTTCATTGGCCGAGCAGAGCTATCCAATCACATGCACCGTGTTCATATCGGAAAGACCCACAAATGTAGCCACTGCGAGCGAACTTTTGCCGTGATCTCGGATCTACAACTTCACATTCGTACCCATACGGGCCACAAGCCCAATGTGTGTGAGCAATGCGGCAAGGCCTTCCGGCTGAAGTCACAGATGAAGCTCCATGTCACGGCCATTCACGACAAGATTCGGGCCTTTAAATGTACCATGTGTCCCAAGGATTTCGTGAAGAAGGTCCATTGGTCTGACCACATAAAAAGCCATCTGAATATTCGCGACAAGATATGCACAGTATGCGGCAAGGGATTCACCAGTTGCCACTCCCTCATCCGGCACCGTCAAATCCATTCCGAGGTGAAGAAGTTCGTCTGCAAGCTGTGCGATGCTAGATTCTCCCAATTTGTGGGCCTAAATTCACATATGAAGCGCACACACAATATTGTGCGcaacaaacagcaaaaggATGGCGAAGCAGTTAATCCTGAGAACTAA
Protein Sequence: METCGLICVSGDYEKFLVRCSQCPTDMELAQWPEFVLHFRNMHTAPLEQKVFKEEIPEKCDLEFQDETFEVEEVMVDDDSSTEESNTEEDMNVEALDSSPDEAAEESEASGGSDQEEELSEPPGENADTSPTPSYKFRPTFFRRDPRTVKFIELYKAHPCLWDSKHNDYKEPSARSNALKQMLTSLETTVSVVLSEVNLKMAIKKLHTQYNTVQKRVLAKKQKPQSLAYNVYTLCSFLKDSRMPEDREQEEAGKSGKIQLDFSKKNKLTTELIQMYLKFPQLYDPEHKEFSSMSSRKQAYEIMAEEISVPNEEDISSDDIFRAINCLRQWYYKTIKVATKTGAETFYSQMCQFLPPKFKQRLVCEICHSVVSSDLVLQTHFFKAHNIGELPFKCTQCSRSFIGRAELSNHMHRVHIGKTHKCSHCERTFAVISDLQLHIRTHTGHKPNVCEQCGKAFRLKSQMKLHVTAIHDKIRAFKCTMCPKDFVKKVHWSDHIKSHLNIRDKICTVCGKGFTSCHSLIRHRQIHSEVKKFVCKLCDARFSQFVGLNSHMKRTHNIVRNKQQKDGEAVNPEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527556;
90% Identity: iTF_00533294; iTF_00527556;
80% Identity: -