Dboc003061.1
Basic Information
- Insect
- Drosophila bocki
- Gene Symbol
- -
- Assembly
- GCA_008042715.1
- Location
- VNJY01006408.1:11225-13254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.41 29 5.2 0.2 3 23 278 299 277 299 0.90 2 10 6e-05 0.0043 17.3 0.3 6 23 308 325 308 325 0.99 3 10 1.2e-05 0.00088 19.5 0.3 1 23 331 354 331 354 0.98 4 10 0.00029 0.021 15.1 0.4 1 23 366 388 366 388 0.97 5 10 0.013 0.93 10.0 5.5 1 23 395 418 395 418 0.97 6 10 1.1e-05 0.00078 19.6 1.8 1 23 424 446 424 446 0.96 7 10 0.077 5.5 7.5 0.4 2 23 455 476 454 476 0.96 8 10 7.1e-05 0.0051 17.1 2.3 2 23 482 504 481 504 0.95 9 10 9.3e-07 6.7e-05 23.0 0.7 2 23 511 532 510 532 0.96 10 10 0.00016 0.012 15.9 4.4 1 23 538 561 538 561 0.96
Sequence Information
- Coding Sequence
- ATGATCTGTCGCCTGTGCCTGCGCTGCCTCAGCCCCGGCAGCGCCGTCTTCCTGTTCGAAACGGATGAGACGCTGGCAGAGACGCGGCTGGTCAAGATGATAGCCAAGTTTCTCCAGTTGGAGATCCTGCCCGACGATAGCATCTCGACCAGCGTGTGCACCGACTGCTGCGAGCACTTGGAGGACTTCAATGGCTTCTGGCAGCTGGTGGAGCAGAAGCAGTGCTCGCTGAAGAAGGAGTTCCTCAACGTGGACGTCGACTGCGTGGCCCTGAAGTGGACAGGCGGCGTGGACGTGGATGTGAACATTGATGAACTGCCGCTGGCGGCAACAGACATGGACGAGAAGCCGCTGGACATGCACAACCTGAGCCTGCTGGGCAGCGTCTTGGATGTCAATGTGGACAGTGTGGAGGTGGCATCACAGGCCCCAGTCTCGGTATCCGTCAAGGAGCAGCTGCAAGAAGACTCCGAGGAGGACGAGAAGCCCTGCCTAAAGGACATGCACACGAGTGATAGCGAGCCGGAGGCGCTGCCAGAAGAAGACTCCTCTTCTTCGGATGATGAGCCGCTGGTCCGGCTTCAGACCAAGGTCAAAACGCCGGCCAAACGCAAGCAGCGCACTTCCAAGGAACGGGCAAGCGGGATTTCCCTTCACCAGGAGCTCAAGGAGCTCCTCGACGACGGCAGCAAGCGAAGGCGCCGGAAGACACCCAGCGACCAGCAGGAGACCGAACTGCAGGCCGTTCTCGAACGCAAGCCCAAGGGCTGCTCGCGCATACAGCTGGCCAAGAGATACGAGGAGGCCATTGCCAGCTATATGAGCGCCAGCTGTGACCTGTGCGACTTCAGTGCCCAGTATCTGTCCGAGCTGAAGACCCACTTCCTGGAGGTTCACCAGCGGGAGTACTATATCAAATGCTGCGGCAAGGTCTTTACCCGTGCCTCCAAGCTAATGGATCACGTACGCAAGCATGTCAATCCCAAGCTCTTTACCTGCACTATATGCCAGAAATCGCTCAACTCGCAGGACTACCTGGCCACCCACATCGAGACCGTGCACAACAAGGTGGCCCAGATAGGCAAGGTGCTCAAGTTTCCCTGCCCCAAGTGCGAGCGCACCTTTAGCAGCGAGCGGCGTATGGCCAACCATCTGGCTAAGCATGACACCGACCAGCTGGAGCACACCTGCGAGATTTGCTGCAAAAGCTTCGCCAATGTCCATCGCCTGCGTAGGCACATCCAATCCATCCACGAGGATCTGCATCGCCATGTCTGTGACATTTGCGGGAAAAAGTTCAAATTCAAGCCCTCCTTCGAGCGTCACCTGCTGGAGCATCAGGGTGTGGTGGCCCCGGCTGTGGAATGTCCTGTGTGCGGTGTCTGGCTTAAGAATGAGCATAGCCTGCGGCTGCATCGTTTCACCCATGACAGCACGGACACGGTGTGTCCGCATTGTGGCAAGACCTGCACCTCGCGCACCGCCCTCCGTGGTCATGTTAAGTACGCCCACAAGCTGACCACCAGCTTGCAGTGCACCTACTGCGAGAAGAGCTTTAAGCAGCAGCGGAATCTGGATGAGCACATGGCCATCCATACGGGCCTGCAGCTGTATAATTGCCCGCACTGCCCCAAGGAATGCCGATCCCGCTCCAATATGTATGTCCACATCAAGCAACGCCATGCGGACGAGTGGTTGCGCGCAAAGATGGCGCGTTCGCATAATCCCCAGTTTAAGCCAGGATCGGGCGAGGCTCAGTCCTGA
- Protein Sequence
- MICRLCLRCLSPGSAVFLFETDETLAETRLVKMIAKFLQLEILPDDSISTSVCTDCCEHLEDFNGFWQLVEQKQCSLKKEFLNVDVDCVALKWTGGVDVDVNIDELPLAATDMDEKPLDMHNLSLLGSVLDVNVDSVEVASQAPVSVSVKEQLQEDSEEDEKPCLKDMHTSDSEPEALPEEDSSSSDDEPLVRLQTKVKTPAKRKQRTSKERASGISLHQELKELLDDGSKRRRRKTPSDQQETELQAVLERKPKGCSRIQLAKRYEEAIASYMSASCDLCDFSAQYLSELKTHFLEVHQREYYIKCCGKVFTRASKLMDHVRKHVNPKLFTCTICQKSLNSQDYLATHIETVHNKVAQIGKVLKFPCPKCERTFSSERRMANHLAKHDTDQLEHTCEICCKSFANVHRLRRHIQSIHEDLHRHVCDICGKKFKFKPSFERHLLEHQGVVAPAVECPVCGVWLKNEHSLRLHRFTHDSTDTVCPHCGKTCTSRTALRGHVKYAHKLTTSLQCTYCEKSFKQQRNLDEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQRHADEWLRAKMARSHNPQFKPGSGEAQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00492388;
- 90% Identity
- iTF_00617789;
- 80% Identity
- -