Dbip002315.1
Basic Information
- Insect
- Drosophila bipectinata
- Gene Symbol
- -
- Assembly
- GCA_018153845.1
- Location
- JAECYF010000001.1:12235112-12239149[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0042 0.31 11.4 0.7 3 23 228 249 226 249 0.95 2 10 0.011 0.79 10.2 4.6 2 23 384 406 384 406 0.91 3 10 0.0047 0.36 11.2 2.3 3 23 489 510 487 510 0.94 4 10 0.096 7.2 7.1 3.5 1 19 604 622 604 627 0.94 5 10 0.00017 0.013 15.8 0.2 2 23 742 764 741 764 0.96 6 10 0.00037 0.028 14.7 0.3 2 23 821 843 820 843 0.92 7 10 0.0082 0.61 10.5 3.6 2 23 897 919 896 919 0.96 8 10 0.08 6 7.4 4.2 2 23 933 955 932 955 0.92 9 10 0.0016 0.12 12.7 0.7 2 23 1020 1042 1020 1042 0.95 10 10 0.037 2.8 8.4 0.6 1 23 1138 1160 1138 1160 0.99
Sequence Information
- Coding Sequence
- ATGGCTGCATCCATATATGCCACCCCACCGCCAGATCTGAGCAGCGAGGACACTGCTCTCTCGGACGTCTCCAACTCATCGACACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAGACATACCGAACTGGATCTGGAGCCAAAAGCAGCGGGAAGCGGCACAAACGACTCGGAGGAGAACTCGGAGGAGAAGGAGAGGGAGTCTGAAATGGAGACGGAAAATGGACAGAGTGCCGACATGGCCACCATGGCGGCAGCCATGCAATTTCAACTCCTTGAGGCACTCAGCGATGCGGCCAAGAAGCGACGCAAGCAACACAATCCCAGTCGGCTGGAGGCCCTGAATCTGAGTGGCGAGATCAACGAAGTGGAGAAGCCCAAGGTGGACTACGAGGAAAAGCTCTCCAAGATGTTTCTGCCCAAGTCCATAGAGCAGTTGAAGGAGACCTTCGAGCTGTTGCAGCAGCAGAAGCAGCAGCAGGAGGAGATGGAGGACGATCCAAACCAACCGGAAACAGAAGCCAACATATCATCGACCATGTCGCCCGGCAAGCAGCGCGAAAATCCCTACCAAACATTTTGCAAGCAGTGTGGCGAGAACTTTGAAACCGAATTCAAGCTGAGCCTGCACATGCTGCAGGATCACAGGGAGGAGCAAGGTTCTGGCAATCAGGATCCAGCCGACTTCCTGGCTTCTATCAAGGTGAAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCAGGACATAACCAATGGCCATGGCAAGGATCAGGAGAACAGGGACCAGGAGAATGCCTGGTTTCAGGCCATGCACCATCCGCATGGACCTGCCCTGCCTCCGGCATTTCCATTTCCGCCCGAGGCCGCCTTGGGTCCTGCAGGATACTTGCCGCTTCTGGGCATGTCCGGTTTCCCCGGAGTCGACGGCCTGAATCGCCCCCCTCTACGCATCTTCAATCCCGAGGCCTACTGCGAGCTGTGCAACAAGGAGTTCTGCAACAAGTACTTCCTCAAGACGCACAAGGCCAACAAGCACGGCATCTTCGATCCCGTGGGCGAGTCTGCTCCAGGGTCCAACTCTTCCAGCCACCACAACAACAACAATACCAACAGTACAAACAACAACAACAGCGGTGGCCCCAATCCCGGCCTGAGTTCGATGAGTCAGATGTTTCAGTTGCAACGGGAGGCTCAGCCCGTCAAGCCGGATCTTGCTGGAGCAGGACCAGGCTCTGTGGGGCCTGGAGGAGCTGCCCCTGGAACTCCAGTGGCCTCAGTACATTGTGACATCTGCTCCAAGCGCTTCACCAACGTCTTCGCCATGCGCCGGCATCGGGCCAAGCAACACGATTCCTTGCCTGCCAACCAGGACTCACCAACATCGCAGAACCAGTCCCGGCGAGAAAGTCCCACTGAGCAGGCAATTAAACAAGAGATGCACCAGGAAGCAGAGCCGGCCAAGCCCTATCAATTGCCGGAGGGATTCCGGGAGGACTTCAGTCTGGAGCAGGAGGAGCTGAGCTTTGTGCCACCTCCGAAAAAGCTACCAAGCCATCTACATCAGCAGGCCAAGGAAGCCAACCTTAGTGCCGAGAAGCTGCGTCGATTGGGCGTCCAGTTCCCGGAGTTCTACTGCGAACTGTGCCACCGGGAGTACGCTAACAGGTACTTCCTGCGCACCCACAAGTGGAAACGCCACGGAGTATTTGTGCCGCCAGAGGAGGTAACGCCCCAGGCCGGAGCCAAGGAGGAAACCCCGATGAGCGCCTGGCCCTTCATGCCCCTGAACCTAATGCTGGCCAAGGCGGCGGCTGCCTCGCTGGATCAACAGCAGGAGGGCGAGGCGGAAGCCGAACCTGAACCAGAACCAGAAGCCGATCAAGATCAGCCCAGGAAGCGCATAAAACTGGAGCAGGATGCCACACCCACAGAAAGCTACGACGAGGAGAAGATAAACGGATCGGTGATGGGTCTGCAGAACCTCCAGAAGCTGCAGTCCATGTTGCAGCAACTGAACGACATCAACGGGAAGAGACCACTGCCATGTCATTTGTGCGGCCGGGAGCTGGAGAACCAATACGCTCTAAGGGCTCACCTGATGACCGAACACGCGGGCCAGATGCAGTTGCCTATGCAGATGCCCATTCCCATTCCCTTGCCGGATCAGCAGCAACCGCAGCAGCAGGCACCCCATCCTCTATCCTCACTTTACCATCAGGCTAATTCCCAGACTCCGCCCGGAACTATAGCCAGATCGTCACCTGGTGGCGGGGATCTCCGTTGCCAGCAGTGTGACAGAGACTTTTCCACGGCCCAGGAATTCAAGCAACATATCGCCGAGGTCCACATGGGAGGTCGTAGTGGTGGCCTCAACGGCAGTCCCACCCTGCGCGAGGGCTTCTTCACTCCAGAGCGCCCCGTCATCCCCGGGCCGGCGGGCGGTGGAGCCAATCCAGCTGCCCCGCCGGGTAACCGGCCGGCTTACACGATGACGCCCACCAGCAGCTACTGCGAGATCTGCAACAAGGAGCTGTGCAACAAATACTTCATGAAGACCCACATGCAGCGGATGCACGGCATCGAGATCGAGAACGGAGCCCAGATCGGGGGCGTGGTGTGCAACATTTGCAACAAGGAGCTCTGCAGCAAGTACTTCCTGCGGGTGCACAAGCACAACACCCACGGCATCATCGAGGAGGGCTCGCCTCTACCCCAGCCACGAGGTCAAAACGGGGTCAAGCTCGAGGCAGCGGCGGCGGCGGCAGCAGCAGCGGCAGCTGCTCAGCAGAACCAGGATCCGGAGCAAATGAATATCTCTCCCACGACAGTGGAGGGCGGCGGCGGTTCCACCAACTCGTCGAGCTCCAACAATGAAGTTTGTCCGCTCTGTTCCCGGCAGTTCCGGAGCTTCAAGTGGCTGCGTTCGCATCTGATGAACGAGCACGGATCAGCGGGTGTGGAGAGACTTCGGGAACTGGAACCCACCGGGCCCTCCAACCGCAGCAAGCCCAACAGTCCCACACTCAAGATTCCCAACGGCAACGGAGTCAACCCGGGAGCGGGAGCAGGAGCTGGAAACCCGGCCCCTAATCTGGCCCAGGCTCTGCAGAACCTCAATGCCCAACATCTTTTTGGACAAATGCAACAGCAACAGCAACAGCTCCCCAAGATGCCACCGCTTCCCTTGCCGGGAATGTTTGGCGATCAGGCCGCGGGAAGATTCAAGGAGTACCAGTGCTCCCTGTGCCCCTTTACCACGCCGTACTACGCTTTCCTGTTCATCCACGAGCGTTCCCATGCCCTGCTAAACAATGGAGGCGAGAACGTGGAGATGCCGCCTGTGGAGATGCCACCTGTACAAGCTCCACCGCCCAGAAGCCAAGGAAAGTCCCGCAGCAAGTCCAGCAAAGCTGCCGCCCCAGTGGCTGCTCCGCCAGCTCCAGTCGATGAGCCGGAGGTAGCTGTGGAGCCCACTAACCTGAGCACGCCCAAGAATGCGCCCCAATCGCCCCGGCCATCCATCACCGCATCCCCTCCGTCGCCTCCCAAAGCCTGCTCCGTTTCGCCGAAGATCAGTTCCCCGGCCAAGCCACCAACCACTCCTAATGGAGTGGGCCACCGTTCTGCTGCCACGTCGCCCTTCGAGGGCTGTGGCGAGCTGGCCAACGGCAGCGGCAAGCCGGCCAGCTACGCGCAACCGGAACGCTCGGAGGAGTCCTACCAGATGCAGGCCTTCCACCTGCAACCCGCCGATGCCGATTCGGAGCTCCAGTTTGCTCCTGCTCTGGTGTACCTGCCAGTCCGGGTGAGGGCCTCCGAATCCGCCACGCTCAGCTTCCGGCTCACACCTGCATAA
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNSSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERHTELDLEPKAAGSGTNDSEENSEEKERESEMETENGQSADMATMAAAMQFQLLEALSDAAKKRRKQHNPSRLEALNLSGEINEVEKPKVDYEEKLSKMFLPKSIEQLKETFELLQQQKQQQEEMEDDPNQPETEANISSTMSPGKQRENPYQTFCKQCGENFETEFKLSLHMLQDHREEQGSGNQDPADFLASIKVKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQDITNGHGKDQENRDQENAWFQAMHHPHGPALPPAFPFPPEAALGPAGYLPLLGMSGFPGVDGLNRPPLRIFNPEAYCELCNKEFCNKYFLKTHKANKHGIFDPVGESAPGSNSSSHHNNNNTNSTNNNNSGGPNPGLSSMSQMFQLQREAQPVKPDLAGAGPGSVGPGGAAPGTPVASVHCDICSKRFTNVFAMRRHRAKQHDSLPANQDSPTSQNQSRRESPTEQAIKQEMHQEAEPAKPYQLPEGFREDFSLEQEELSFVPPPKKLPSHLHQQAKEANLSAEKLRRLGVQFPEFYCELCHREYANRYFLRTHKWKRHGVFVPPEEVTPQAGAKEETPMSAWPFMPLNLMLAKAAAASLDQQQEGEAEAEPEPEPEADQDQPRKRIKLEQDATPTESYDEEKINGSVMGLQNLQKLQSMLQQLNDINGKRPLPCHLCGRELENQYALRAHLMTEHAGQMQLPMQMPIPIPLPDQQQPQQQAPHPLSSLYHQANSQTPPGTIARSSPGGGDLRCQQCDRDFSTAQEFKQHIAEVHMGGRSGGLNGSPTLREGFFTPERPVIPGPAGGGANPAAPPGNRPAYTMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEEGSPLPQPRGQNGVKLEAAAAAAAAAAAAQQNQDPEQMNISPTTVEGGGGSTNSSSSNNEVCPLCSRQFRSFKWLRSHLMNEHGSAGVERLRELEPTGPSNRSKPNSPTLKIPNGNGVNPGAGAGAGNPAPNLAQALQNLNAQHLFGQMQQQQQQLPKMPPLPLPGMFGDQAAGRFKEYQCSLCPFTTPYYAFLFIHERSHALLNNGGENVEMPPVEMPPVQAPPPRSQGKSRSKSSKAAAPVAAPPAPVDEPEVAVEPTNLSTPKNAPQSPRPSITASPPSPPKACSVSPKISSPAKPPTTPNGVGHRSAATSPFEGCGELANGSGKPASYAQPERSEESYQMQAFHLQPADADSELQFAPALVYLPVRVRASESATLSFRLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00481822;
- 90% Identity
- iTF_00566341;
- 80% Identity
- -