Basic Information

Insect: Drosophila bipectinata
Gene Symbol: -
Assembly: GCA_018153845.1
Location: JAECYF010000043.1:272838-276215[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.02 1.5 9.3 0.5 2 23 39 60 38 60 0.96

2 13 0.0042 0.31 11.4 1.6 1 23 66 89 66 89 0.95

3 13 0.037 2.8 8.4 0.9 1 19 101 119 101 122 0.93

4 13 0.042 3.1 8.3 1.4 3 22 139 158 137 158 0.90

5 13 0.28 21 5.7 2.0 2 23 408 430 407 430 0.94

6 13 0.011 0.85 10.1 0.3 1 23 455 477 455 477 0.97

7 13 0.0045 0.34 11.3 1.6 1 23 485 509 485 509 0.95

8 13 0.1 7.5 7.1 2.4 2 23 514 536 513 536 0.95

9 13 0.00025 0.019 15.2 0.2 2 21 549 568 548 569 0.93

10 13 0.0077 0.57 10.6 0.4 3 23 579 599 577 599 0.97

11 13 7.7e-07 5.8e-05 23.2 2.8 1 23 605 628 605 628 0.98

12 13 3.1e-05 0.0023 18.1 1.4 1 23 634 656 634 656 0.98

13 13 0.00029 0.021 15.1 2.9 1 23 662 684 662 684 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.02	1.5	9.3	0.5	2	23	39	60	38	60	0.96
2	13	0.0042	0.31	11.4	1.6	1	23	66	89	66	89	0.95
3	13	0.037	2.8	8.4	0.9	1	19	101	119	101	122	0.93
4	13	0.042	3.1	8.3	1.4	3	22	139	158	137	158	0.90
5	13	0.28	21	5.7	2.0	2	23	408	430	407	430	0.94
6	13	0.011	0.85	10.1	0.3	1	23	455	477	455	477	0.97
7	13	0.0045	0.34	11.3	1.6	1	23	485	509	485	509	0.95
8	13	0.1	7.5	7.1	2.4	2	23	514	536	513	536	0.95
9	13	0.00025	0.019	15.2	0.2	2	21	549	568	548	569	0.93
10	13	0.0077	0.57	10.6	0.4	3	23	579	599	577	599	0.97
11	13	7.7e-07	5.8e-05	23.2	2.8	1	23	605	628	605	628	0.98
12	13	3.1e-05	0.0023	18.1	1.4	1	23	634	656	634	656	0.98
13	13	0.00029	0.021	15.1	2.9	1	23	662	684	662	684	0.95

Sequence Information

Coding Sequence: ATGGCCTCCGAGTCGATGGCCCCCAGTAGCAGCAGCGGTGCCGCCGCCGCCGCAGCTGCCGCTGCCGCCACCAAGCTGCTGGTGGAGATCTCCACGGACGGAGTACCCAAGCTGCACTGCCCGGTGTGCAACAAGGCCCTTTTCTCGCTGGCCGGCTATGTGAAGCACGTGAAGAAGCACCAGCCGCCAGGCGGCTTTGAATGCCGGCAGTGCGATGCCCGCTACTGCAGCGAAGAGGAACTGACCCAGCATACCAAGGATGAGCATCCGGATAGTGGCTCCGCCCAGGAGGACAAGCCATATGTGTGCGACAAGTGTGGTGTGGAGTACATGTACCAGGAAGCCTATCGTCGCCACTGTCGTACCAAGTGTGGCGAGGAGAAGCTTTCCAGGGAGGAGTCTCGACCTGTGGAATGCCAGTGCTGCTCTACTCGCTTTTCCACCGATGCCAACCTGGAGAAGCACCGACGCAGTCGTCCTGACACTTGCGGCCAGCCGGAATACGATCCGCCTGGCAGCTCCAATCAGGAAATGAAGCGGAAGTATCGCAAGAAGATGAAACGAGCTGACTCCGATGAGGACTCCACCTCCGACGACGAATCCGAGGTGGACAGCGACGATGACATTCCCCTGGCCAGCCGGCTAAAAACGAAGCTAAAGCAGGAGAGCCAGAACTCTGATTCGGGTGACGAGTGCCCCGATTTCGAGCCGAACAACAGTGAAGACGAGGCGTTCCCGTTGCCGCCACCGGCCATGGTCAAGGTGGAGGCGTTCGACGAGGAGGACTTCGAGTACCAGGACGCCAGCATGTATGTGAAGACCGAGAGCACGGATATCTTCAGCAACGAGAAGGACAAGCTGTTGGATGTCCTGCTGAACGAGGGCGACGGCCTGAAGCCGTTCGAGAGCCTCAAGGTGGAGCAGGGCGCCGGCATCCTGGATGAGATTGCGGCCGTGCCGCTGGTGGAGGTAGCCGAGGAGGATGTCCTTGCGCTGCGTGGCTCTCGCCCTGATAAGCCTGGGATGAAGAGGCGTGGCCGACCGCCCAAGGGAGAACGAAGGGAGCCGTCGGAACCGGTCGTCAAGAGAAAGTATCGCAAGAGAAACGCCAGATCCTCATCGCCGGATGAATTCTCTCCGGGGCCGAAGCGCATGGCCAAGATCAGCAAGAAGGAACTGAAGGAACGCCTCAAAATGATCAACAAGATGGAGAAGTCCTGGAAGTGCCCGCACTGCGTCAAGATCTACCACATTCGGAAGCCCTACGAGAAGCATCTGCGCGACGATCACAAGCTGACCGAGCAGGAGATGCGCGAAATCTTCAAGGACGTCGACGTCCATGCCAAGCTGGACGAGGAGGTCTTCAAGTGTCCCATCTGCAGCAAGATCTACCTGGTGGAAAAGCGCCTGGTCACCCACATGAAGGTTCACGGCGAGGATGGCAAGCTGACGTTCAAGTGCCCCTGCTATTGCAACCTTTTCTTCGCCACCAAGGAGCAGGCCACGGAACACGCCCGCGCCCAGCACAAGGAACTGCTCTACTGCGAGAAGTGCGACAAGTACATGACAGGTCACGACAGTCTGAAGAACCACGAGCGCAACTTCCACTCCAAGCGGGAGCCACGCAGCCAGGTGCGCAACCTCATCTGCGACAAGTGCGGCAAGAAGTTCACCGGCCGCACCTCACTCTCCGATCATGTGCGCTCCGACTGCGGCCGCCTGCCACTCTACGGCTGTTCCGTTTGCGGCAAGCATCTTTCCACTGCTGGCATTCTCAAGACGCACATGCTCCTCCACAAGGCAGACACTCCATACCAGTGCGACAAGTGCGGCAAGACGTTCAAGGTGAAGGCACAGTACAAGTCGCACTTGAAGACGCGACATACGGACTACAAGCCCTACAAGTGCCACCTCTGCCCCAAGGAGTATCCGTACAGGGAGAGCCTGCTCACCCACATGACCGTACACACTGGCATCAAGCGATTCCTGTGCAATAACTGCGGCAAGCGGTTCACCTGCATCTCCAATCTGCAGGCCCATCGCAAGGTGCATGCCGACACCTGCGGCCAACTGCCCCTCAACGCCAAGGCCACACAGTACATGGGCGTGCAGCGGGGAAAGCTTCTGATGGGTGCCAAGCCGGAGGCGGGTATGGCCTACGACGAAACCAAGACCCTGATCGCCGAGGAGGTCATCGAGAAGGACATGCCAATGGCCCAGGAGCTCAACTTCCCCTCGGATGGCTCCGCTCCGCTGGCCACCGTTCCCCTAAACTATGCCTCCACGCACCTGGTGCCCCACATCGTACTCCAGACCATGCAGGCCGAGGCACGGCGGCTGGAGTAA
Protein Sequence: MASESMAPSSSSGAAAAAAAAAATKLLVEISTDGVPKLHCPVCNKALFSLAGYVKHVKKHQPPGGFECRQCDARYCSEEELTQHTKDEHPDSGSAQEDKPYVCDKCGVEYMYQEAYRRHCRTKCGEEKLSREESRPVECQCCSTRFSTDANLEKHRRSRPDTCGQPEYDPPGSSNQEMKRKYRKKMKRADSDEDSTSDDESEVDSDDDIPLASRLKTKLKQESQNSDSGDECPDFEPNNSEDEAFPLPPPAMVKVEAFDEEDFEYQDASMYVKTESTDIFSNEKDKLLDVLLNEGDGLKPFESLKVEQGAGILDEIAAVPLVEVAEEDVLALRGSRPDKPGMKRRGRPPKGERREPSEPVVKRKYRKRNARSSSPDEFSPGPKRMAKISKKELKERLKMINKMEKSWKCPHCVKIYHIRKPYEKHLRDDHKLTEQEMREIFKDVDVHAKLDEEVFKCPICSKIYLVEKRLVTHMKVHGEDGKLTFKCPCYCNLFFATKEQATEHARAQHKELLYCEKCDKYMTGHDSLKNHERNFHSKREPRSQVRNLICDKCGKKFTGRTSLSDHVRSDCGRLPLYGCSVCGKHLSTAGILKTHMLLHKADTPYQCDKCGKTFKVKAQYKSHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMAYDETKTLIAEEVIEKDMPMAQELNFPSDGSAPLATVPLNYASTHLVPHIVLQTMQAEARRLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00615081;
90% Identity: iTF_00546135;
80% Identity: iTF_00566278;