Basic Information

Insect: Drosophila bipectinata
Gene Symbol: -
Assembly: GCA_018153845.1
Location: JAECYF010000041.1:11283266-11286465[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0018 0.13 12.6 1.9 1 23 197 220 197 220 0.97

2 12 0.00019 0.014 15.7 5.4 1 23 225 248 225 248 0.95

3 12 4.1e-05 0.0031 17.8 2.1 1 23 253 275 253 275 0.98

4 12 3.1 2.3e+02 2.4 3.8 2 23 282 305 281 305 0.91

5 12 0.00046 0.035 14.4 4.6 3 23 316 337 315 337 0.95

6 12 0.0032 0.24 11.8 0.2 1 23 343 366 343 366 0.96

7 12 0.0088 0.66 10.4 0.4 2 23 377 399 376 399 0.93

8 12 0.00056 0.042 14.2 0.5 1 23 427 449 427 449 0.96

9 12 3.1e-05 0.0023 18.1 2.2 1 23 456 478 456 478 0.96

10 12 1.8e-05 0.0014 18.8 0.3 2 23 485 506 485 506 0.97

11 12 0.00034 0.025 14.9 0.8 1 23 513 535 513 535 0.99

12 12 0.00011 0.0086 16.3 3.7 1 23 541 564 541 564 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0018	0.13	12.6	1.9	1	23	197	220	197	220	0.97
2	12	0.00019	0.014	15.7	5.4	1	23	225	248	225	248	0.95
3	12	4.1e-05	0.0031	17.8	2.1	1	23	253	275	253	275	0.98
4	12	3.1	2.3e+02	2.4	3.8	2	23	282	305	281	305	0.91
5	12	0.00046	0.035	14.4	4.6	3	23	316	337	315	337	0.95
6	12	0.0032	0.24	11.8	0.2	1	23	343	366	343	366	0.96
7	12	0.0088	0.66	10.4	0.4	2	23	377	399	376	399	0.93
8	12	0.00056	0.042	14.2	0.5	1	23	427	449	427	449	0.96
9	12	3.1e-05	0.0023	18.1	2.2	1	23	456	478	456	478	0.96
10	12	1.8e-05	0.0014	18.8	0.3	2	23	485	506	485	506	0.97
11	12	0.00034	0.025	14.9	0.8	1	23	513	535	513	535	0.99
12	12	0.00011	0.0086	16.3	3.7	1	23	541	564	541	564	0.98

Sequence Information

Coding Sequence: ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTGTATGCGATTCCGAAAATGGCAGCAACAATTTCTTGGATCTCTACCATCCCAATTGCTGGCCCAGCGAGATGGCCCAGATACGACTGCAGTTTGTTAACTGGAATCTTGAGATCTCCCCAAATGACGGCTTACCCCAAAAGATCTGCAGCGATTGTTTCGCTAAATTTTGCTCCATAAACGCCTTTCGAGGGGTCTGCCAGGAGGCGCAGCTGAAGTTGTCCAATATATACGACAAAATCGATGCCAACAGCCTGGAGGAGGATGATCAGGGAGATGCTTCCTCAGACCAAGTGCAAGATGTGGAGGGAATAGGACCAGACATAACAACAACGACGGTTTCAGCCGAAACTCCACCAAACACTGCCATTGAACCCATAGAGATTTTTGTGGACGAGGAGGAGGAGGAGCTGCAGCCAGACCTCGAGGAAGCCACTAGCCCGCAGCTGACCATTAGTTACACCTGCAAGTTTTGTCTGCGGCCGCAGGAAAGCTACCAGCTGCAGCAGTTGCTCCTGGAGCACATCAACACTAGCCACGACTCGGAGCAGCCGTACAATTGTCCAGAATGCGATGCCTGTTTCCAGGATGCGGCATCCCGTACCGTGCACCTCAAGAGCTGTCACGTGGAGAAGCAGCACACCTGTGAGGTGTGTGGCAAGAAGTACGGCGATCGGCACAACCTCCGTCACCACGTTGAAAAATATCACACGGACACGGACTTTGAATGTGGCCTCTGCGAGAAGCGCTTCTTCACCCGGAAAAGCCTCAACTACCATATGAAGTGGCACAACCCGGAACGCCAGCTCAAATGTCGTCAGAGTGGGTGCGAGAGGCTGTTCATCAATCAGCGCCATCTGAAATGCCACGAAGCCACTCACCTGGGAGCTAGCTCCCGGAAGAGTGAGCATTGCAGCTTTTGTGGAAAGACCTTTATTCATCTGAAGACTCTTCGCTGGCACATCTACCGACAGCATGGAGGAGAGAAACCCTACAAATGTGCCAACTGCACGGAGGTTTTTGCATCCTACGCCGAGAAACGCATCCATATGCTGGAGAAGCACAGGGAGAACCTAACCGCCATCGAGCGAAGCGAGTGCATGATGTGCCGGCAGCACTTTGCCACAGAGCAGGACCTAGCCAGCCACATGTCTGCGGAGCACCTTCATCGACCAGGGATGCCGGTGATTGCCAACAACAAGCGTGTCCTGCAGCAGAAGCGGGAACGTCAATACTCCGGACTCTTCCAGTGCGGCAGTTGCACCCAGAGGTTCAACATGAAGTCGGCGCTGGAGCGGCACTCTGCCGTGCATTCGGAGAAGGACCGCCCGCACGCCTGTCCCCAGTGCTCCAAGAGATTCAAGCGGGTCCAGGACATGAAGTGGCACATTAAGACGCACGAGAAGGAGAAGCCAAACGTGTGTGATGTATGCGGCAAATCCTTTGCCCTGAAGTACGTGCTAAACCAGCATCGACGCAGTCACGAGGTCTTGGAAAAGAACTTCAAATGCAGCATTTGCGGAAGAGCCTATTTATTTGAAAAGTCCCTGCGACTCCACCAAAGGGTACATACCGGAAAAACCTACTACAAGTGCGATCTCTGCCAGGAACGCTTTGTCACGCACATCAAGCTTAAAACTCACATGCAAAAGACACACGCCTCTCAGCCCCCCTCTGAGGACACTCTCGATGATCTGATAAACATTGTGATTTCCTAA
Protein Sequence: METCRTCAISMFVCDSENGSNNFLDLYHPNCWPSEMAQIRLQFVNWNLEISPNDGLPQKICSDCFAKFCSINAFRGVCQEAQLKLSNIYDKIDANSLEEDDQGDASSDQVQDVEGIGPDITTTTVSAETPPNTAIEPIEIFVDEEEEELQPDLEEATSPQLTISYTCKFCLRPQESYQLQQLLLEHINTSHDSEQPYNCPECDACFQDAASRTVHLKSCHVEKQHTCEVCGKKYGDRHNLRHHVEKYHTDTDFECGLCEKRFFTRKSLNYHMKWHNPERQLKCRQSGCERLFINQRHLKCHEATHLGASSRKSEHCSFCGKTFIHLKTLRWHIYRQHGGEKPYKCANCTEVFASYAEKRIHMLEKHRENLTAIERSECMMCRQHFATEQDLASHMSAEHLHRPGMPVIANNKRVLQQKRERQYSGLFQCGSCTQRFNMKSALERHSAVHSEKDRPHACPQCSKRFKRVQDMKWHIKTHEKEKPNVCDVCGKSFALKYVLNQHRRSHEVLEKNFKCSICGRAYLFEKSLRLHQRVHTGKTYYKCDLCQERFVTHIKLKTHMQKTHASQPPSEDTLDDLINIVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00491676;
90% Identity: iTF_00615078;
80% Identity: -