Basic Information

Insect: Drosophila bipectinata
Gene Symbol: salm
Assembly: GCA_018153845.1
Location: JAECYF010000098.1:7565192-7571597[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-06 0.00014 22.0 1.7 1 23 354 376 354 376 0.98

2 8 2.7e-05 0.002 18.3 3.5 1 23 382 404 382 404 0.98

3 8 1.8 1.4e+02 3.1 2.5 5 23 637 655 634 655 0.84

4 8 2.7e-08 2.1e-06 27.7 0.2 1 23 661 683 661 683 0.98

5 8 0.00083 0.062 13.6 0.9 1 23 693 715 693 715 0.98

6 8 0.018 1.4 9.4 0.1 2 23 923 945 923 945 0.97

7 8 9e-06 0.00067 19.8 5.0 1 23 1082 1104 1082 1104 0.96

8 8 7.1e-08 5.4e-06 26.4 0.7 1 23 1110 1132 1110 1132 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-06	0.00014	22.0	1.7	1	23	354	376	354	376	0.98
2	8	2.7e-05	0.002	18.3	3.5	1	23	382	404	382	404	0.98
3	8	1.8	1.4e+02	3.1	2.5	5	23	637	655	634	655	0.84
4	8	2.7e-08	2.1e-06	27.7	0.2	1	23	661	683	661	683	0.98
5	8	0.00083	0.062	13.6	0.9	1	23	693	715	693	715	0.98
6	8	0.018	1.4	9.4	0.1	2	23	923	945	923	945	0.97
7	8	9e-06	0.00067	19.8	5.0	1	23	1082	1104	1082	1104	0.96
8	8	7.1e-08	5.4e-06	26.4	0.7	1	23	1110	1132	1110	1132	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAACCGCATCAATTACCGCGGAACAGGCGCCACCAGGAGCGGCAGTGGAGAGCGGGACAGGGACAGGGAGCGAGAGCGAGACAGGGATCGGGACCGGGACAGGGAGCGGGAGACGCTGCTGGCCAAGGAGCTGGATGCGGATAGCAACAACAATGGCACTGAGCCGGCACTGGAAATGGACACGGTTCCCGAATCGGAAATGGGCGACGAACAGGAGCAGGAGCAGGGCCAGGAGTTGGTGCAAAATCAGGACCAGGATCAGGATCAAGAGCTGGACAACAGTAACGAGGCCCTGGACCTGTCGGTGATATCTTCGGGCGGTCGAGGGGGCGCACTTCCGGGCAGCGGTCACGTCTCCCTGGAGGCCCTACAACATACCAAAGTGGCGGTGGCCCAGTTCGCGGCCTCCGCTTTGGCGGCCGGATCCGTTGGCGGTACCGGCTCCCAGTCACAGGCCGACCTGGCCATGGTGCAGTCCACCATCTTTAATGTGCAGCGGCAGCATCTGATGCAGCTGCAGCTCATCCAGCATCTGCAGAGTCAATTGAAACGGGCGGAGGCCGCCGCCCTGGGCAGGAGGCAGTCCCAAAGCGAGGAGGAGGACGATCAGCCGGATGATGAGGAGCCCAAGAAGCAGCCACCGAATGGGTTGAAAGTCAAAGAGGAAGAGGCGGAGGCTGACACGGAGGTGCTCGACCCTGAGGATAACTCCAAAAAGGTGCCAGAGCGAGAGGTGGAGCCGCAGGAGAGTTCAAAGACTGACAAGGAGGAGAGCAAGTCAAAGGAGCAAGGTGAGCAGGCGTCGGGCTCGGAATACCACCAGCCGCTGATGTGCGACATTAGTTCCAGCCTGGCCTCGAGCATCATCACCAACCACGACCCTCCGCCGGCTCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGTCGCACGGAGGAGGTGCTGGACTCCGCCTCCCAGAGCCTCCACGCCGCTCAGCTGCAGGAGGAGTACTCGGAGTACGCCTCCAAGGAGGCCCAGAGTCGGGGTGAGATCTTCAAGCACCGCTGCAAGTACTGCGGCAAGATCTTTGGCAGCTACTCGGCGCTGCAGATCCACCTGCGATCCCACACCGGCGAGCGTCCCTTTCACTGCAACGTTTGCGGCAGCAAGTTCACCACCAAAGGAAATCTTAAGGTGCACTATCAGAGGCACACCCAGATCTTTCCTCCCATGTTGCTGCCGCCGGGGGTAGGTGCGACACCGCCAGGCCAGGGCGAGCAATTCCCAGTGCGCCTCCCCTTTGCTCCTCCAGGGCCACTGGCGCCACAGGAGCAACAGGGTCGACAGGATAGCCACGGACAACAGCAAGAAGTGCCAGAGGAGATGCGGTCAGGTGAAGGGCAGGCGGAGCAGGCACTACCACAGGCGGAGGATCTCAGCAGGCCAGTCAGGGAGCGGGAGAGAGAAAAGGAAAGGGAGCGGGAGAAGCCCAAGGAACCGGAGAAGATCTCGAGAACCTCTCCGGAAATACCGCCAGAGATCAAGCAGCCACCACCCGAAATCCCAAAGCCCGAAAAGGACACCTCCAAAGGACACCCATCGCGGCGCAATGGCTCGGTGCGCAAGCGCCAGGCCAGCAGTGCTGCCGGAAGTCCTCCGCAGGACGAAAGGGATCGCGACCTAGCTGAACAGCTGCACATTGCCAAGCTGGTGAGACGTTCCTCATCCTCCTCCTCGGCCAGTCGCGACCAACAGCCGGCGGCAGAGTACTCCCTGGCCCAAATGGAGCGCATCATCGACAAATCCTGGGAGGACCTTATCGAGATCGACAAGACCTCGGAGACGTCGAAACTCCAGCAGCTGGTGGATAACATCGAGAACAAGCTGACGGATCCGAATCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGTCGCAGCTCTTTGCAGATGCACATAAGGACCCACACCGGCGAGCGCCCTTTTCGCTGCAAGATCTGTGGCCGGGCTTTCGCCACCAAGGGCAACCTGAAGGCCCACATGAGCATCCACAAGATCAAGCCGCCGATGCGGAGCCAGTTCAAGTGCCCGGTGTGCCACCAGAAGTTTTCCAACGGCATTATCCTGCAGCAGCATATCCGCATCCACACGATGGACGACGGCAGTGGCCAGGGGGCACCGCCTCCTCCGCCCAACTCCAGCGAGGCCGAACGGCTGGGCATCGAGGACCAGAACTCGAACAAGTCGCTGGGCACCTCCGACACCCTGGATTTCTCGACCACCATCTCGGACCACTCGGGCCAGCGATCCGAGTCCTCGCAGGGCGGCGACTTTGACGAGTTTATGACTATGGACAGCACCGACGACTCCAGGGACAACTCCAGTGCCGCCACGGCCACCCCGCATCCAGGGGACAGGAGATCGGGTGGATTAGGGCCTCCCAATGATGGCTCTGACGAGAGATCGCGCTCGAATCCGGATCTCGGGGGTGGACGCAGCGAGAGTGGGGACCTGCCCGCCATGGACCTCTCGTCGCCCTCTTCGGCTTCGGGAAGAATTTTCGGACCTGGTCTATCAAACGGAACCGGAGGTCCAGGTGTAGCCGGAGCGGGTGGTGGCCTGCCCATGCTGGGTATGCCCATGCCTCCGAATCTGCTGCTGATGGCCGCCGCCCGGGAGGAGATGCACGCCCTGGGCCAGGCCCACGCCAAGTTTCCGCTGCTGCCCTTCGGTCCTCTAGGATTTATGGGTCTGCACCCGCCCCCCAATGTTTGCAACCTCTGCTTCAAGATGCTGCCCAGCTTGGCCGCCTTGGAAAGTCATCTGCAGACGGAACATGCCAAAGAATCGGCGCCGGGGCATGCCCTACGCCCACAAGCCAGTGAAGCAGGATCGCCCTACGGAGCCAAGCTCACTCTCAATCCCAATCTGTTTGCGAAGAAGTCTTCGAGTGACAAGCTGCCGCAGCCTGAGTCTAGCGGCTCGGATGGGGGGGCTGCCTCCATCAAAGAGGAGCCCGATCAGGAGCAGCCCGTCCGCGAGGAGGGTGCTTCTCCGGCGGAGGGCTCTGGCGTGGCCGGTGGAGGCGCCGCCAACTATCCCCAGGACGCCGTCGACGCCGAGCAGAGCCTGATGAAGATGCAGCTTCATGCCCATCGCTTCCCGGCCAGTCCGCTCGACTTCCAGCAGGCTCTCATGTCTGCCGGACCGCCGAGTTCCAGCCTGGATCCGCCGGTGAACAACAAGCACTTCTGCCATGTCTGCCGCAGAAACTTCAGCTCCAGCTCTGCCCTCCAGATCCACATGCGCACCCACACGGGCGACAAGCCCTTCCAGTGCAACGTCTGCCAGAAGGCCTTCACCACCAAGGGGAATCTGAAGGTACACATGGGCACCCACATGTGGACAAATCCCACTTCGCGACGCGGACGTCGGATGTCCTTGGAGCTGCCCATGCGTCCCGGGCCGAACTCTGGAGCCGGTCATCCAGGATCCAGTGCCGAGCAGGAGTTTATGCAGCGACGCCCAGAACTCTTCTTTCCCTACCTGCCACCCTTTTTCAATGGATTGCCGCCAAAGCCTGGTGAACTGAGCCCTAGCGCTTTTCCCAGCATTCCCCCGCCCCCCTTTGCCAATGGCGGCAAGTATCCATATCCGCCCGGACTTCTGGGCTTTCCAGGGTTCCTGGGACAGCATCCCTATGCCCTGGAGAGGAGGAGCAGCAGCAAGTCACCCACCCCGGAGCCGGCCCAGAGTCCATCCTTGCGGGAGGATGAGGCGGCAGGTGGGAACATTTGGCATCCGCTTAGTCGGATCAAGGTGGAGAGCAATCAAAACGACGTAATGGGCCACGAAGCGGAGGAGCCTGGTCAGGATCAGGCGGAGACAGGAACCGTTGGTGGCGGGGATCCCGAGGAAACCGACGAAAACTAA
Protein Sequence: MCSIFRNRINYRGTGATRSGSGERDRDRERERDRDRDRDRERETLLAKELDADSNNNGTEPALEMDTVPESEMGDEQEQEQGQELVQNQDQDQDQELDNSNEALDLSVISSGGRGGALPGSGHVSLEALQHTKVAVAQFAASALAAGSVGGTGSQSQADLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAEAAALGRRQSQSEEEDDQPDDEEPKKQPPNGLKVKEEEAEADTEVLDPEDNSKKVPEREVEPQESSKTDKEESKSKEQGEQASGSEYHQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQLQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVGATPPGQGEQFPVRLPFAPPGPLAPQEQQGRQDSHGQQQEVPEEMRSGEGQAEQALPQAEDLSRPVREREREKEREREKPKEPEKISRTSPEIPPEIKQPPPEIPKPEKDTSKGHPSRRNGSVRKRQASSAAGSPPQDERDRDLAEQLHIAKLVRRSSSSSSASRDQQPAAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGQGAPPPPPNSSEAERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPGDRRSGGLGPPNDGSDERSRSNPDLGGGRSESGDLPAMDLSSPSSASGRIFGPGLSNGTGGPGVAGAGGGLPMLGMPMPPNLLLMAAAREEMHALGQAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQTEHAKESAPGHALRPQASEAGSPYGAKLTLNPNLFAKKSSSDKLPQPESSGSDGGAASIKEEPDQEQPVREEGASPAEGSGVAGGGAANYPQDAVDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPNSGAGHPGSSAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPSAFPSIPPPPFANGGKYPYPPGLLGFPGFLGQHPYALERRSSSKSPTPEPAQSPSLREDEAAGGNIWHPLSRIKVESNQNDVMGHEAEEPGQDQAETGTVGGGDPEETDEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00477489;
90% Identity: iTF_00580130;
80% Identity: -