Basic Information

Insect: Drosophila bipectinata
Gene Symbol: -
Assembly: GCA_018153845.1
Location: JAECYF010000041.1:16508445-16513236[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0079 0.6 10.5 0.8 1 23 206 228 206 228 0.97

2 24 0.029 2.2 8.8 1.4 1 23 234 256 234 256 0.97

3 24 3.2 2.4e+02 2.4 1.8 2 23 288 309 287 309 0.95

4 24 0.0011 0.082 13.3 0.4 1 23 382 405 382 405 0.94

5 24 4 3e+02 2.1 0.1 3 23 478 498 476 498 0.94

6 24 0.041 3.1 8.3 1.5 1 23 576 599 576 599 0.96

7 24 0.22 17 6.0 0.7 1 22 608 629 608 629 0.94

8 24 0.28 21 5.7 5.0 1 23 638 660 638 661 0.95

9 24 0.0012 0.087 13.2 1.9 2 23 685 706 684 706 0.97

10 24 1.2e-06 9.2e-05 22.5 7.7 1 23 712 734 712 734 0.99

11 24 0.0009 0.068 13.5 1.3 1 23 874 897 874 897 0.94

12 24 0.35 27 5.4 1.6 1 22 904 925 904 925 0.93

13 24 0.016 1.2 9.6 0.7 1 23 934 957 934 957 0.95

14 24 0.044 3.3 8.2 1.2 6 23 982 999 982 999 0.97

15 24 0.00015 0.012 15.9 0.5 1 23 1006 1028 1006 1028 0.98

16 24 0.091 6.8 7.2 0.0 2 21 1055 1074 1054 1075 0.93

17 24 0.0031 0.23 11.8 2.2 1 23 1121 1144 1121 1144 0.96

18 24 0.0064 0.48 10.8 0.8 1 23 1181 1204 1181 1204 0.96

19 24 7.5e-05 0.0056 16.9 1.5 1 23 1231 1254 1231 1254 0.98

20 24 4.6e-06 0.00034 20.7 0.2 2 23 1277 1298 1276 1298 0.95

21 24 3.7e-05 0.0028 17.9 2.9 1 23 1304 1326 1304 1326 0.99

22 24 1.8e-06 0.00014 22.0 2.0 1 23 1332 1354 1332 1354 0.97

23 24 1.6e-07 1.2e-05 25.3 2.4 1 23 1360 1382 1360 1382 0.99

24 24 0.009 0.67 10.4 0.2 1 23 1388 1410 1388 1410 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0079	0.6	10.5	0.8	1	23	206	228	206	228	0.97
2	24	0.029	2.2	8.8	1.4	1	23	234	256	234	256	0.97
3	24	3.2	2.4e+02	2.4	1.8	2	23	288	309	287	309	0.95
4	24	0.0011	0.082	13.3	0.4	1	23	382	405	382	405	0.94
5	24	4	3e+02	2.1	0.1	3	23	478	498	476	498	0.94
6	24	0.041	3.1	8.3	1.5	1	23	576	599	576	599	0.96
7	24	0.22	17	6.0	0.7	1	22	608	629	608	629	0.94
8	24	0.28	21	5.7	5.0	1	23	638	660	638	661	0.95
9	24	0.0012	0.087	13.2	1.9	2	23	685	706	684	706	0.97
10	24	1.2e-06	9.2e-05	22.5	7.7	1	23	712	734	712	734	0.99
11	24	0.0009	0.068	13.5	1.3	1	23	874	897	874	897	0.94
12	24	0.35	27	5.4	1.6	1	22	904	925	904	925	0.93
13	24	0.016	1.2	9.6	0.7	1	23	934	957	934	957	0.95
14	24	0.044	3.3	8.2	1.2	6	23	982	999	982	999	0.97
15	24	0.00015	0.012	15.9	0.5	1	23	1006	1028	1006	1028	0.98
16	24	0.091	6.8	7.2	0.0	2	21	1055	1074	1054	1075	0.93
17	24	0.0031	0.23	11.8	2.2	1	23	1121	1144	1121	1144	0.96
18	24	0.0064	0.48	10.8	0.8	1	23	1181	1204	1181	1204	0.96
19	24	7.5e-05	0.0056	16.9	1.5	1	23	1231	1254	1231	1254	0.98
20	24	4.6e-06	0.00034	20.7	0.2	2	23	1277	1298	1276	1298	0.95
21	24	3.7e-05	0.0028	17.9	2.9	1	23	1304	1326	1304	1326	0.99
22	24	1.8e-06	0.00014	22.0	2.0	1	23	1332	1354	1332	1354	0.97
23	24	1.6e-07	1.2e-05	25.3	2.4	1	23	1360	1382	1360	1382	0.99
24	24	0.009	0.67	10.4	0.2	1	23	1388	1410	1388	1410	0.97

Sequence Information

Coding Sequence: ATGCTACCACCAAACACGTGCCGAACATGCGCTCTGCAAAACCCCGATTTACAGCCGCTTTCCGCTTGTTTGGAAAAGGACGCCAATAAGAGTTTCTACGAGGTGCTCCACGAGCTAACGCAAATCGATCCCCTCCAAGAGAGCTTGGACTCCAGCCTACCCCAGCATTTGTGCAGCGATTGCTTGAAAAGATTGGAGAATGCCTATTCTTTTGTGCAGCAAGCCAGAAAGGTTAATGGGGAACTCTTGGTACGGTTGAGGGAATGCCTTGATGAGACACCTATAGACCTACCCCAGGAACAGAAAATAAAAACGGAAATTGCAGCCGATCCAGAAGCAGGAAATGAGGATGAGGAGGCCCTTCAAACTCCAACGGTGGAATGCAAGTGGGATGCGGAAAGTGACAGTGATAATAGGGAGAACCCTGTTACTGCCAGCGAATCGGAGGAAGTCGATGAAAAGCCGTATCAACTGCGAAGAAGTGCCCGTAAGGTCAAGCAGCCAACAGAAAGTGAAAATGAAGACATCAACATCAACGACAAATCCCCCGTAAAACGCCGGCGAGGACGGCCTCCTGGCAAGGCCAAGAGCCAATCATTGACCTCCGATGGTCGGTATGCCTGCCAGGCGTGCGGAAAAAGTTTCTCCTGGTACCGCGACATGCAGCGCCATTCACGGAGTCATTTCGACAAAAACAACTTCGTTTGCCGAACCTGCGGAAAGGGATTTCTGCGTAAGGACAATTATGTGTTTCATCTTCGCAGCCACAACAAAAAAGCGGCTAAGATGGAGTCCTTAAAGCTGGGCAACGAGTGGATCTTTGCCGAGCGCTTGTACTCCTCCGGCAGCCCTAAAAGAATCGAATGTAAGCTATGCAACAATAAGTACGAACGAGTCCAGGATCTCAGATGCCATTTGGACACTCACATAAGCCTAGACAGTCTACATGCCTTATGCCCGGATAGCGACGTGGTCCGAGAGCATTACCAAACACACTCCGGCGACATGGAGCGAATCAAACAAATGATTGTAGCGGATGTAGCCAAGGGAGTTTTGGAAAAGTTTGCATCGGTGGTCAATTTCCATGGTTATGAGCTGGATATTAATGACTCCGATGGGGAATCCTCTCTAGAAGATGCCAAATACGTCTGCGACATGTGCAATGTAGGATTTGGTCGCAAACACCTTTTAGTACGGCACACGCTGGAGGAACACGCTCGTGATCAGGCAGATGAGCTACCTTGGCAACGTTGCAGCTTCTGCAAAGTCGGATTTCTGTCCTCGGCGCTCTACAATCAGCATTTGCACCACCAGTGCCACAACAAGCTTAAGAAGTATCACTGTCGAAAATGTCCTGGAAAGTTTATGTGGCTGGAGAACCTCGAAAAACACTCTTGCTCTCATCCAGCTAACATGGAACGTCAGATCTTCTGTACCTTGTGCGACGCCCAAATGCCCACTCTAGCCAAGCTACGCATCCACCTCGTTCGCCATCAAAAAGATTTTGAGGACTTCAATCCTGATCTCCAGACTATGTTCTTTCAATCCTTCTATCCCAATGGCTTGGAATGCACTCCCGCAGAACTGAGTGCTCGTATCATTGAGGACTTCGAAGTGCAGGACTTTGACCGCTATTACAACGCTGCTACCTCCAGTGGTCGCGAGCTGGATATCTTTGATTCCGAAACTGAAGAATCGGAAGCAGAAGATGGCGAAGCACCGCACCACACCTGTGTTCTTTGCGGAAAGGTGTCAAAGAGGCTATTGGTCCTACTGCAGCACCAGAAAAGTTTTCATACCGAGGAATCAGGTGCCTTGCCCTTCTCTTGTGAAGATTGTCAAGAGGGATTTGTGTGCGACGCATTGCTTCAGAAGCATCGCAGGCGATGTAGCGCAAAGAGGCATTCAAGGTTCCACTGCCCAAACTGCAATCTACACTTTATGTGGCAGGGCAACTACGAGAGGCATCTAAAAGCTCACCACGACCAGGAGGAGAGTCCGGAGCTGGAAGAAAGTCGTTCGTTGAGACCATGCTCCTCCGCAGCCAAGCTGCAGTGTGATGAGTGTGAAAAGACTTTTATTTGGCACAAAGACCTCACCCGCCATAAGCGCATTCACCAGACAGAAGTAAAGTATAAGTGCACCCACTGCGATCGCAAGTTCCACCGAAAGGATAATCTTAAATCTCACATGCGGGTGCATTCCACGGAGCAACAATCCGATCAAACGGCAGAGCACACCTTAAATGGTTCAGATAATGATCCATCCATTTTGGGCCAGCTATGTCGTCCACATGGCTGCAAGCAGATCCAATGCATGATCTGCCTTTCCCGACACTCCAAAATTTCAGATCTTCGGGCACACCTTACATCCCACAAGTACTCAGTGACGTTCTCCGAGTTTAGAGATATTGCCACCGCATCAAAATCCATGTATCCTGAACTACCTGCACCTTTGAACAAGTCCCAGCTGGCGGAGAGAATAATGGCTGATGTGGATAAAGGATGCGACCTGGACAGATTCATTTCCATCGCCAACGAATCGGGCTTAGAGCTGACTCTAGATAGCAGCGAGACAGATACTGAGTCGGATCAGGAGGAGAATCATTCCACTCACACCTATACCTGCAATATCTGTGGAATACAGGTCAATCGAAAATACCAGCTCTATGCCCACCACTTGGAAAAGCACACGGGGGCAGAGACCCCCTATTCATGCACCCATTGCCAGGCAAGGTTCCTTGACAAGGCCCTTCTAGATCACCACTCCCGAACTCTTTGCCGGAATTCCCAGAAACGATTCCAGTGCCGCAAGTGCCCGCTTCGATTTCGTTGGCGAGAGAACTTAAAATTACACAACAATGTGGCCCACCAGCCGAAAGAAACTCCGCCTGAAGGAAAATCCGTATCCCCCCAGGGCGAGAGCGATCTGCACTGTATACCATGCCAGCGAAGCTTCAAAATGCAGAAGGATCTTACGCGACACAACTTGATGCATACCCAGGATTCTAACATATATCGGTGTCGATGGTGTGCCCGCCGCTTCTACCGTTGGGCTAATCTCCTCCAGCATATAGTACGCCACGGGATCCGGGCTAACCAATTGCCCTATGCTGAGGCTCTTCTTGACTCATATGGACATCCTGGAGGTAACAAGATCATCCAATGTCGCGTTTGCTCTGTAAGTTTTCCCACAATTGCTGCACTGCGTCTGCATCTTGAAACCAGCCCGGTGGGCAGTCACCATGAGCCCTTGTCGCTCCAGAACTACTCTATAACAAATCAGATGGGATATGAGCTAACACTGGAGGATTCTGAAACGGACGAGGAAGGCTGTAAACCACCGGGAGCTCCGGCCTTTTATACATGCGGCATGTGCCAACTGCGGTGTGTGCGGAAATTCGAGCTTCAACAGCATCAGCAGGCCATGCACCGAATTGAAAAGATTCCAGACGGTTGCGATAAATGCATCTTCAAGAGCGTGTGCCCAGAACTGATTGCCCATCATGTAAGAACGCAGTGTGGCAACCAGCAAAAGCATTTTACCTGCACGCGATGCGGATACAAGTTTATGTGGGAATCCAATCTTTTGCTTCACATGCAACTGCAACATGAGAACAAGGAGGGTGCAGAACAGGACCCTGCCATCCAGGAATCGCCTGATGAGCCGTACAAAGCTACATGCCAAATTTTTCAATGTGGTCTGTGTCCTAGAAAGTACAACCGCAAGGATCGACTGACGGCGCACATAAAAAAGTTTCATGGTCCCAATGTGGAGAAGACACCCATGCGGCCACCGATCTCAGAGCCCAAGGAGCCCAAACGATTTCTCTGCGCCTTTTGTGGCAAGGCCGTTAGTTCGTCCTCAAACCTAATCATTCATATGCGGCGTCATACTGGTGAGAAGCCCTTCAAGTGCGACTATTGCGATATGGCTTTTCCCCGATCCTCAGATCTCCAGTGCCATCGAAGGACGCATACTGGCGAGAGGCCGCACGTGTGCACGGTATGCCAGAAGGGATTCGCCCGATCCTACAAACTTCAGCAGCATATGCGTATCCACAGCGGAGAGAGGCCCTATAAGTGTACCTACTGCGAGAAGAGCTTTACCCAGTCCAACGACTTGACCCTCCACATCCGGCGGCACACGGGTGAACGCCCATACCAGTGCGGCGTATGTGGAGATCGCTTTATTCAGGGCACCGCTTTGAAAAATCATCGCCTACAACATGGCCACCATGAGGATAGCGCCAATGTCCAGGGCTCGGCAACGGAAATTACTGCAAGGCGTACGGTCCTAGAAAAGTTTTCTGTCTAA
Protein Sequence: MLPPNTCRTCALQNPDLQPLSACLEKDANKSFYEVLHELTQIDPLQESLDSSLPQHLCSDCLKRLENAYSFVQQARKVNGELLVRLRECLDETPIDLPQEQKIKTEIAADPEAGNEDEEALQTPTVECKWDAESDSDNRENPVTASESEEVDEKPYQLRRSARKVKQPTESENEDININDKSPVKRRRGRPPGKAKSQSLTSDGRYACQACGKSFSWYRDMQRHSRSHFDKNNFVCRTCGKGFLRKDNYVFHLRSHNKKAAKMESLKLGNEWIFAERLYSSGSPKRIECKLCNNKYERVQDLRCHLDTHISLDSLHALCPDSDVVREHYQTHSGDMERIKQMIVADVAKGVLEKFASVVNFHGYELDINDSDGESSLEDAKYVCDMCNVGFGRKHLLVRHTLEEHARDQADELPWQRCSFCKVGFLSSALYNQHLHHQCHNKLKKYHCRKCPGKFMWLENLEKHSCSHPANMERQIFCTLCDAQMPTLAKLRIHLVRHQKDFEDFNPDLQTMFFQSFYPNGLECTPAELSARIIEDFEVQDFDRYYNAATSSGRELDIFDSETEESEAEDGEAPHHTCVLCGKVSKRLLVLLQHQKSFHTEESGALPFSCEDCQEGFVCDALLQKHRRRCSAKRHSRFHCPNCNLHFMWQGNYERHLKAHHDQEESPELEESRSLRPCSSAAKLQCDECEKTFIWHKDLTRHKRIHQTEVKYKCTHCDRKFHRKDNLKSHMRVHSTEQQSDQTAEHTLNGSDNDPSILGQLCRPHGCKQIQCMICLSRHSKISDLRAHLTSHKYSVTFSEFRDIATASKSMYPELPAPLNKSQLAERIMADVDKGCDLDRFISIANESGLELTLDSSETDTESDQEENHSTHTYTCNICGIQVNRKYQLYAHHLEKHTGAETPYSCTHCQARFLDKALLDHHSRTLCRNSQKRFQCRKCPLRFRWRENLKLHNNVAHQPKETPPEGKSVSPQGESDLHCIPCQRSFKMQKDLTRHNLMHTQDSNIYRCRWCARRFYRWANLLQHIVRHGIRANQLPYAEALLDSYGHPGGNKIIQCRVCSVSFPTIAALRLHLETSPVGSHHEPLSLQNYSITNQMGYELTLEDSETDEEGCKPPGAPAFYTCGMCQLRCVRKFELQQHQQAMHRIEKIPDGCDKCIFKSVCPELIAHHVRTQCGNQQKHFTCTRCGYKFMWESNLLLHMQLQHENKEGAEQDPAIQESPDEPYKATCQIFQCGLCPRKYNRKDRLTAHIKKFHGPNVEKTPMRPPISEPKEPKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHVCTVCQKGFARSYKLQQHMRIHSGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCGVCGDRFIQGTALKNHRLQHGHHEDSANVQGSATEITARRTVLEKFSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00550383;
90% Identity: iTF_00566224;
80% Identity: -