Basic Information

Insect: Drosophila bifasciata
Gene Symbol: PRDM13
Assembly: GCA_009664405.1
Location: CM019043.1:42421953-42423452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00039 0.026 14.7 1.0 1 20 190 209 190 211 0.95

2 4 4e-06 0.00027 21.0 1.4 3 23 318 338 316 338 0.93

3 4 1.5e-05 0.001 19.1 0.5 2 23 345 366 344 366 0.97

4 4 2.5e-06 0.00017 21.6 3.0 1 23 399 422 399 422 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00039	0.026	14.7	1.0	1	20	190	209	190	211	0.95
2	4	4e-06	0.00027	21.0	1.4	3	23	318	338	316	338	0.93
3	4	1.5e-05	0.001	19.1	0.5	2	23	345	366	344	366	0.97
4	4	2.5e-06	0.00017	21.6	3.0	1	23	399	422	399	422	0.98

Sequence Information

Coding Sequence: ATGCACACGACCGCTCATCTGGATAGTCTAGAGCTGGAGCAGGCGGCACCCGCACAGAAGCGCTCCGCGGCCAGCATGATCTTTCGCATCGAGCAGATGCTGCCCAGCTCCAGCCTGTCGCCGACCCCAACCACCACATCGCCATCGGTGGCGTCGCCACCACTGACGCCCACGACGAGCACTCAGAGTCCGGCCAAGCGGATGAGAAGTAATCCCCGTCCTGGCGTCTACACCTCGCAGTACACTCCAAAGGACACCTGCTCGAGTTCCGTGCCCACCCAAGCTCTACTCAGCTCCACGGCCACTCCCACCGACGGCACCCGAGCTCACTGTCAGTTGTCCAACGGGGAACTGATCATGTCCGCCACGTTGTTGCGGCAGATCAAGCTCTCCGAAGATGTCTACAGCTTTAATGCGATCTTTGAGCTGCATGGCGGACAGGTGCGGGTGCGACTGGTGCGGGATGTGGCGCGGGACGATGAGATTGTGGCCTGGTTCGGAGAGGAGCTGGTGCTGCTCATGGGCATACCCTTCCTGACGCCCCTAAACATACAAGGAAACAGTCGCTACACGTGTCACCTGTGCCATCTCACCTTCGAGACCCCTCATCCGCTGAAGATCCATCTGGCTCTCGGCTGTGGCCGCAGTGCCATGGACATTCTCTGGATGCGCCTGCACTATGCACTGAAGGCGGCGGCCCGCAGCCACCAAAGAACTGCCACTCATATGTCGCCCACGCCAGCGACTTCCTCCACATCCTCGGCGTCGCCCACCCACTCGCCTCCGCTGCAGATTCCGCCTCGTTTCTCCGCCTTTCGTCCGATTTCGGCCATGCAGACACTGGGACCCCTGGCCACGGCCACTGCGGCGGCCTCTGCGCATCCCATGAATGCGGCAGCGCAGATCGAGGCGATTGTCAGCAACATGGGTGCTTCGAAGCAGGGACACTTGTGCATCTACTGCGGCAAGGTGTACTCCCGCAAGTATGGCCTGAAGATCCACATCCGCACCCACACCGGCTTCAAGCCGCTCAAGTGCAAGTTCTGCCTGCGACCCTTCGGCGATCCGAGTAACCTCAACAAGCACGTACGCCTGCATCTCCAGACCCAGCCCAGTTCAGCAGGTGGGGCAGGGGTGGGAGAGGGCGGAGGTGGCAGCAGTGATGTGGACATTGAAGGTGAATCGGAGGCGGGCTATCAGTGTCGCATCTGTCACAAGTCCCTGGCCCGACGACGCGATCTGCAGCGGCACATGGAGACGCGACATGGTGGCACCACCATTGTACatgccaccaccagcaccaccacactGACCATGGCCACAGTGAGTGGTGCAAGAGCAGCCACATCCACCACCAAGTCGAGTTGA
Protein Sequence: MHTTAHLDSLELEQAAPAQKRSAASMIFRIEQMLPSSSLSPTPTTTSPSVASPPLTPTTSTQSPAKRMRSNPRPGVYTSQYTPKDTCSSSVPTQALLSSTATPTDGTRAHCQLSNGELIMSATLLRQIKLSEDVYSFNAIFELHGGQVRVRLVRDVARDDEIVAWFGEELVLLMGIPFLTPLNIQGNSRYTCHLCHLTFETPHPLKIHLALGCGRSAMDILWMRLHYALKAAARSHQRTATHMSPTPATSSTSSASPTHSPPLQIPPRFSAFRPISAMQTLGPLATATAAASAHPMNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLKIHIRTHTGFKPLKCKFCLRPFGDPSNLNKHVRLHLQTQPSSAGGAGVGEGGGGSSDVDIEGESEAGYQCRICHKSLARRRDLQRHMETRHGGTTIVHATTSTTTLTMATVSGARAATSTTKSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00603633;
90% Identity: iTF_00484670;
80% Identity: -