Basic Information

Insect: Drosophila bifasciata
Gene Symbol: pita
Assembly: GCA_009664405.1
Location: CM019043.1:7038972-7041048[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.4 3.6e+02 1.7 0.2 1 14 15 28 15 32 0.84

2 11 0.0004 0.026 14.7 0.1 1 23 236 258 236 258 0.97

3 11 6.3e-06 0.00042 20.4 2.8 1 23 264 286 264 286 0.97

4 11 8.7e-06 0.00058 19.9 1.3 1 23 292 314 292 314 0.96

5 11 0.017 1.1 9.6 1.1 1 23 320 342 320 342 0.96

6 11 7.5e-05 0.005 17.0 0.7 1 23 348 370 348 370 0.95

7 11 2.8e-06 0.00018 21.5 0.5 1 23 376 398 376 398 0.94

8 11 4.1e-05 0.0027 17.8 5.4 1 23 404 426 404 426 0.98

9 11 3 2e+02 2.5 0.5 1 20 434 453 434 456 0.83

10 11 0.098 6.5 7.2 0.0 2 23 462 483 461 483 0.96

11 11 0.12 8.3 6.8 0.2 1 23 489 512 489 512 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.4	3.6e+02	1.7	0.2	1	14	15	28	15	32	0.84
2	11	0.0004	0.026	14.7	0.1	1	23	236	258	236	258	0.97
3	11	6.3e-06	0.00042	20.4	2.8	1	23	264	286	264	286	0.97
4	11	8.7e-06	0.00058	19.9	1.3	1	23	292	314	292	314	0.96
5	11	0.017	1.1	9.6	1.1	1	23	320	342	320	342	0.96
6	11	7.5e-05	0.005	17.0	0.7	1	23	348	370	348	370	0.95
7	11	2.8e-06	0.00018	21.5	0.5	1	23	376	398	376	398	0.94
8	11	4.1e-05	0.0027	17.8	5.4	1	23	404	426	404	426	0.98
9	11	3	2e+02	2.5	0.5	1	20	434	453	434	456	0.83
10	11	0.098	6.5	7.2	0.0	2	23	462	483	461	483	0.96
11	11	0.12	8.3	6.8	0.2	1	23	489	512	489	512	0.90

Sequence Information

Coding Sequence: ATGCAGCCATCGATGGTGAGCGCCGATGATAAAATGCCCAGCTACATATGCCTGGACTGCCACTTGCTGTTCGAGCACAGTTACCGCTTTATGCAGATGTGCAAGCGAGCGGAGACAGCCCTTCGGCAGTTTCCACTGACAGGAACTCTGCCAGCACCGCTGCAAAAACCACGTCCTCCGACAAAGACTCCGACTGCTGCGGTAGCCAGGAAGGAGGCTAAGCCCGCCGAGGTACAGCCCAGGAAGCTGCTTAACACGCTGGCCAATTCCAAGACTGTGATCATTGAAGATGTCCAGGTCTTGGAGACCAGCCTGTTGGCGAAAAAGCTGGCCGCAGCACCTATACGTTCCAAGTCCTATCAGATGAAGGTGGAGAACAACCAGGACCTGTCCATGGACGATGTCCAGAATATGATGGAGGACATAGCCAACGAACTAGACGAAGAAATATCGACAGCACCAGTTGCAGCTCCATCCCTACCTGTGCAGACGAAATTGCCGATGAAGCCGAAGGTTCTGAACAAGCCCACCGTTCGGATATTGAACAAGGGCGCTGCAGTTGCTGTGGAGCCCGAACTGGCCACGACCCAGATAAAACGAGGACGGGACGGCAATGTGGCAATTGTCACCGAAATTATTGGCCCAAATACGATGCCCCCCAGTGCAGAAGCCACCAAGGACGCTGCCCTCGTGGCGACAAATGTCTTTCCCTGCCCCGACTGCGAGCGATCCTTCCCCCTTCTGCAGCTGCTCGAGATCCATCGGCTGAACCATACCCGTGCGCGCAGTTTCCAGTGCAGCGACTGCAACAAGGGCTTCTTCTCCAAGTACGATCTGCAGAAGCACAGATTCATCCACACCGGCGAGAAGCCCTTCGCTTGTAGCGTCTGTGATAAGGCCTTCACGCGGCGAGCCCTGCTCCATCGGCACGAGAGCTCGCACACGGACCTCCCCAAATTCATCTGCGTGCACTGCGAGAAGCCGTTCCTGTCGCGCGAGGACATGAAGAAGCATGCCGAGCGGCACACCAAGTCGCGCCCCTTCCGGTGCACCATGTGCAGCAAGTCATTTGCCTTCAAGCAGGGTCTGGAGCGGCACGAGGTGGTCCACAGCATGAATCTGCCCTTCCCCTGCGAGCACTGCCCAAGGAGCTTTGTCACTTCGAGCAAGCTTGCCCGTCATCTGGTGGCCCATGCGGGCAAGCGAGCCTACCCCTGCAAGTACTGCTCCAAATCGTATATTCTCTCGCACCATCTGTCGCGGCACTTGCGCATGCACAAGCAGGATTCGGGTGCCTCGTTCGCCTGCAGCATCTGCAAGGAGTCGCACCAGAGCTACGACAGTCTCATCGAGCACTCGGTCCTCCATGCGAACATGTCCCTAAAGTGTCCGCTGTGCAACGAAAAGATCAGCGACATCGCTGCGGTGGAGGGGCACATGACCACGCACAAGGAGGGCGAGAGATTTGCCTGCGAATTTTGCGACTTAATCTTCCTCAGCTCGGATCGCCTGCGGAAACACGTTGAGGATGAGCATGtgctggacatggacatgtATCAGAACGATGGGGACAGGGTGTCGAACGAGAGTGATGCCGAGGCAGAGTTCGAAGTAAAAGACACCGATATCGATGAGGCAGAGCAGAAATTCTTGCTGCAGGAGCTGCTACGCGATGAAcagccatcgccatcgccaccgCCGCCAGTGAAAAAACGTAAAGTAGATGCACCGAAGGCGGCCACTCAAACCCTTGTTTTCCCCAAACGTACACGGCTGACACGGACTGCAGCAGATCGTGCCGCACCCGAAAGTTCTCAGAATACCAGACAGCAGGCAGTAGCTGTGACGAGGAAGAGTCCTGTGGCCCTGCCCAAGAAGGGACGTTCGCTGATCAAAAACGGAAATTCATCGACAACGTCCAAGCAATAA
Protein Sequence: MQPSMVSADDKMPSYICLDCHLLFEHSYRFMQMCKRAETALRQFPLTGTLPAPLQKPRPPTKTPTAAVARKEAKPAEVQPRKLLNTLANSKTVIIEDVQVLETSLLAKKLAAAPIRSKSYQMKVENNQDLSMDDVQNMMEDIANELDEEISTAPVAAPSLPVQTKLPMKPKVLNKPTVRILNKGAAVAVEPELATTQIKRGRDGNVAIVTEIIGPNTMPPSAEATKDAALVATNVFPCPDCERSFPLLQLLEIHRLNHTRARSFQCSDCNKGFFSKYDLQKHRFIHTGEKPFACSVCDKAFTRRALLHRHESSHTDLPKFICVHCEKPFLSREDMKKHAERHTKSRPFRCTMCSKSFAFKQGLERHEVVHSMNLPFPCEHCPRSFVTSSKLARHLVAHAGKRAYPCKYCSKSYILSHHLSRHLRMHKQDSGASFACSICKESHQSYDSLIEHSVLHANMSLKCPLCNEKISDIAAVEGHMTTHKEGERFACEFCDLIFLSSDRLRKHVEDEHVLDMDMYQNDGDRVSNESDAEAEFEVKDTDIDEAEQKFLLQELLRDEQPSPSPPPPVKKRKVDAPKAATQTLVFPKRTRLTRTAADRAAPESSQNTRQQAVAVTRKSPVALPKKGRSLIKNGNSSTTSKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00575037;
90% Identity: iTF_00564127;
80% Identity: -