Basic Information

Insect: Drosophila bifasciata
Gene Symbol: -
Assembly: GCA_009664405.1
Location: CM019042.1:46133869-46135675[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.3e-07 5.5e-05 23.1 1.4 1 23 237 260 237 260 0.97

2 8 1.1e-05 0.00075 19.5 0.7 3 23 271 291 269 291 0.93

3 8 0.022 1.5 9.2 0.6 1 23 300 323 300 323 0.92

4 8 0.00038 0.025 14.8 0.0 3 23 333 353 331 353 0.96

5 8 6.2e-05 0.0041 17.2 6.4 1 23 359 381 359 381 0.98

6 8 7.2e-05 0.0048 17.0 0.2 1 23 386 408 386 408 0.98

7 8 1.4e-06 9.6e-05 22.4 1.7 1 23 414 436 414 436 0.97

8 8 0.0085 0.56 10.5 3.8 1 23 442 465 442 465 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.3e-07	5.5e-05	23.1	1.4	1	23	237	260	237	260	0.97
2	8	1.1e-05	0.00075	19.5	0.7	3	23	271	291	269	291	0.93
3	8	0.022	1.5	9.2	0.6	1	23	300	323	300	323	0.92
4	8	0.00038	0.025	14.8	0.0	3	23	333	353	331	353	0.96
5	8	6.2e-05	0.0041	17.2	6.4	1	23	359	381	359	381	0.98
6	8	7.2e-05	0.0048	17.0	0.2	1	23	386	408	386	408	0.98
7	8	1.4e-06	9.6e-05	22.4	1.7	1	23	414	436	414	436	0.97
8	8	0.0085	0.56	10.5	3.8	1	23	442	465	442	465	0.97

Sequence Information

Coding Sequence: ATGGCTGCCGCCACGAGTGCCACCGACTGGCATCTGTGGTGTCGCCTGTGTGCCAAGGACGATCTGCAGGGCAACATAAATGTGTTCCTGAAGCACGAGCATACGGGCGGTCCAGGAGATGGCTTTGGCAGCGATCTGGCACTGGCCACAGCCATTGGCAAGTACTTTTGGGTTGATATAACGCGTAGCGAGGAGCTGCCAAAGATGATCTGCACAGACTGCCTCACGCTCGTCACAACTTTGGTGAATTTCTCGGAGCGCATTAGCCGCGTGCAGAAGCTCTACTGTATTCTACAGGCCACTGCCAAGCAGGAGCAAGTGAATCTGCAGGAGCTACGCACCAAGTTTGGCCTGCTGGAGGAGGAACCAGAGACCCTAACTGAGGTCCACTATGTGGAGGAGAAACCCAAATTGGGGGCACAAGGCGATCTGCTCATAGAAGAGTCTACATTTGATATGAAGAACCCGCTACATGAGACGGCAGAGGATCAGGAAGAGGAGCATGGGGAAGCAACAAGTAGAAGCGAGGAGAATGAGCCCGAATCGGAGCAGGAAGAGGAGCAgccagagcaggagcaggagtacgATGAAAATGCAGTGCTGCTGAACCTATGCGATACCTATGGCATAACCGATGAAAATTCCTCACGCGACAGCCACAAATGCGCCACAAGACAGAGTAAATCGAAGGAGGACCCCGACAAGGCGCATCAGTGCAGCATCTGCACGCGGGCGTATGCCAGAGCCAGCACTTTGAACCGTCACATGCGGCAGGATCATGACAGGATCTTCGAGACCAATCTGCTGGCCTGCGAGCAGTGCCCCAAGAAGTTTCGCACTCGCTACCAGCTGGAGCGGCACAGTCAGGGCCATCTGCCGATGCCCAAGCGCAAGGTGCATCCGTGTGCCAGCTGCGACAAGATGTTTGCCAGCAATGCCTCCGCCCTGCATCATGCACAGTACGCGCATTTGGATGAGCGCCCGCGTCCCATCATCTGTGAGCAGTGCGGCGTGCGCGTCACGTCCATCAGCAATCTCAAGGTGCATGTGCTGACGCACACGGACGATGCCCCCTTCGAGTGTGATGTGTGCAAGAAGTGCTTCAAGAGCGCCAGCCGGCTGAAGCATCACAAGGAGACGCACGATCCGCACAAGTACATCTGTCCCGAGTGTGGCATGCAGCTGAATTCGCGCACCACCCTCAATCGCCATCGGCTGGTGCACACGGATCAGATGCAGCACAAATGCGACTACTGTGGCAGGGAGTTTAAGCGCGCCAAGGCGCTCAAGAATCATCTCATACTGCACACCGGTCTCAAGCCATACTCCTGTGACTTTTGCGATCGCACATTTGCCAATGGCTCGAATTGTCGCACGCACAAGAAGAAGGCACATCCCGAGGAGTTGGCCGCCCAGGAGGCGGCTGGCGGTGGCAAGACATGCAATCGAAATATACCCAAACTGGAGGCGCTTAAAGCTTTCACGAAAAACAAGGATAATCTATCGCCAGTGGCCACCAAGCAGAGCGGTTGCTTTGCCTTTGGCAAGAAGCCTAAGCCGCAGATcaaagaggcagcagcagagtcagagccagagccgccTGAAGTCAAACCCGCTACAACTACGGCCATACCCACAATAGATACTATTTATAATCATATTATGATTGATTATCATTAA
Protein Sequence: MAAATSATDWHLWCRLCAKDDLQGNINVFLKHEHTGGPGDGFGSDLALATAIGKYFWVDITRSEELPKMICTDCLTLVTTLVNFSERISRVQKLYCILQATAKQEQVNLQELRTKFGLLEEEPETLTEVHYVEEKPKLGAQGDLLIEESTFDMKNPLHETAEDQEEEHGEATSRSEENEPESEQEEEQPEQEQEYDENAVLLNLCDTYGITDENSSRDSHKCATRQSKSKEDPDKAHQCSICTRAYARASTLNRHMRQDHDRIFETNLLACEQCPKKFRTRYQLERHSQGHLPMPKRKVHPCASCDKMFASNASALHHAQYAHLDERPRPIICEQCGVRVTSISNLKVHVLTHTDDAPFECDVCKKCFKSASRLKHHKETHDPHKYICPECGMQLNSRTTLNRHRLVHTDQMQHKCDYCGREFKRAKALKNHLILHTGLKPYSCDFCDRTFANGSNCRTHKKKAHPEELAAQEAAGGGKTCNRNIPKLEALKAFTKNKDNLSPVATKQSGCFAFGKKPKPQIKEAAAESEPEPPEVKPATTTAIPTIDTIYNHIMIDYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00575031;
90% Identity: -
80% Identity: -