Dbif012414.1
Basic Information
- Insect
- Drosophila bifasciata
- Gene Symbol
- -
- Assembly
- GCA_009664405.1
- Location
- CM019041.1:5219003-5220315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.7 1.8e+02 2.6 3.1 3 23 40 61 38 61 0.87 2 9 0.00026 0.018 15.3 6.9 1 23 174 197 174 197 0.97 3 9 0.00083 0.055 13.7 0.1 1 23 203 226 203 226 0.98 4 9 6.1e-05 0.004 17.3 1.0 1 23 229 251 229 251 0.97 5 9 1.5e-06 0.0001 22.3 4.2 1 23 257 281 257 281 0.98 6 9 5.5e-05 0.0037 17.4 0.3 1 23 287 309 287 309 0.98 7 9 0.00016 0.011 15.9 1.8 1 20 315 334 315 337 0.93 8 9 0.00019 0.013 15.7 4.6 1 23 343 365 343 365 0.96 9 9 1.5e-05 0.001 19.2 0.0 1 23 371 393 371 393 0.98
Sequence Information
- Coding Sequence
- ATGCTGAAACACTGCCTAGTCCATGTGGACTACACGCGTCTGCATGCCCAGCAGAAAATGCAGCCCAAGTGCGGCGAGATCTTCTACGAGCAGGAGTGCAATAGCTTCCACTTGGCTTGCTGCCTGTGCGACATGAAGCACTTTTCTTTTGATGATTTCGTGCGGCACATTCGCAACATACACTTCGACAAGCAGGGCAGGCCCCAGACGCAGGCGGTGACTGTCCAGAAGCCCCTGGATAACTCTGCAGAGGAGAAGTCAATCCTCCTCGCAGTGAAATgcgatgatgtagatgacccGGAGGAGGACCCTTCTGCATTGCGTATCAGTGACCAGTCGATGGGCAATCGGGAAACTGAAGAGCTCTGGGAGTGTGCCGAGAATTCATCAAACTCTGAGAGTGACGGCTGCGACCTGGAGCCAGAGACCATCTTGAGCAGCCCCTGTGATAGGACAGATGAAGATAACgcggacgaggaggaggaccaGCAAAGTATTTTCAAGCGCCAGCCCAAGGATTTCTGCTGCAAGCACTGTGATCGCAAATACACATCGCTGAAATACCTGAACATCCACATCAAGATGTACCATCCGCATCCGAAGGCGTTCAAGTGCAGCGACTGTGGCGACGCCTTCGATGTGATACGAGCCCTGGAAGCGCATCGCCGCAAGCTGCACACTGACTTCAGTTGCAAACTGTGCGCCAAGATCTTCAAGAACTCACGGACTCTCCTCCGTCACGTGCAGGGACATTCTGGGCTGCGGCAGTACAAGTGTGACTTTGAGAATTGCGAGAAATCCTTTACGAACAAGCACAATCTCAACTCCCATCGTCGCATACACCGAACGGAGCGCAACTATGTGTGCGAGCTGTGCGGCTATAGGTCACGATACCGCGAAGCCCTCATCGTCCATCGACGCTCCCACACGGGCGAGAAGCCCTTCAAGTGTGACACCTGTGCGCGCTGCTTCGCCTCCAAGTCGCTGCTGAACGAGCATCAGCCCATGCACTCCACGGAACGACCGTACAAGTGCAAGGACTGCGAGGCGACCTTCTCCCGCCCCAAGGCTCTCTACCACCACAAGCATCTGCATCTGGCAATCAAAAAGTTCAAATGCAAAGTCTGTGGCAATGCCTACGCCCAGGCGGCGGGACTCTCGGCCCATATGCGGGGAcacaagcagcaggcagccaacGGTGTGTCCGACAACAATGAACTGGAGATGGTATTCACTTGCTAA
- Protein Sequence
- MLKHCLVHVDYTRLHAQQKMQPKCGEIFYEQECNSFHLACCLCDMKHFSFDDFVRHIRNIHFDKQGRPQTQAVTVQKPLDNSAEEKSILLAVKCDDVDDPEEDPSALRISDQSMGNRETEELWECAENSSNSESDGCDLEPETILSSPCDRTDEDNADEEEDQQSIFKRQPKDFCCKHCDRKYTSLKYLNIHIKMYHPHPKAFKCSDCGDAFDVIRALEAHRRKLHTDFSCKLCAKIFKNSRTLLRHVQGHSGLRQYKCDFENCEKSFTNKHNLNSHRRIHRTERNYVCELCGYRSRYREALIVHRRSHTGEKPFKCDTCARCFASKSLLNEHQPMHSTERPYKCKDCEATFSRPKALYHHKHLHLAIKKFKCKVCGNAYAQAAGLSAHMRGHKQQAANGVSDNNELEMVFTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00575026;
- 90% Identity
- iTF_00603529;
- 80% Identity
- -