Dbif006411.1
Basic Information
- Insect
- Drosophila bifasciata
- Gene Symbol
- -
- Assembly
- GCA_009664405.1
- Location
- CM019044.1:44374533-44377723[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.2e-05 0.0028 17.7 4.8 1 23 176 199 176 199 0.97 2 16 0.0029 0.19 12.0 0.9 1 23 242 265 242 265 0.94 3 16 0.0045 0.3 11.4 5.9 1 23 334 357 334 357 0.96 4 16 0.0012 0.082 13.1 0.7 2 23 413 434 412 434 0.97 5 16 5.9 3.9e+02 1.6 1.1 1 20 547 566 547 568 0.88 6 16 0.013 0.83 10.0 0.5 1 23 577 599 577 599 0.94 7 16 0.00016 0.011 15.9 0.7 1 23 606 629 606 629 0.96 8 16 0.00066 0.044 14.0 0.8 2 23 638 659 637 659 0.95 9 16 0.0031 0.21 11.9 0.1 2 20 686 704 685 709 0.90 10 16 0.0026 0.17 12.1 1.3 1 23 744 767 744 767 0.96 11 16 2.8 1.9e+02 2.6 0.7 3 22 776 795 774 795 0.95 12 16 0.29 19 5.7 1.9 1 23 804 827 804 827 0.95 13 16 3.4e-05 0.0023 18.0 0.1 1 23 849 872 849 872 0.97 14 16 0.033 2.2 8.7 0.2 1 23 882 904 882 904 0.94 15 16 5.5e-05 0.0037 17.4 3.7 1 23 910 932 910 932 0.99 16 16 5.7e-06 0.00038 20.5 3.2 1 23 938 960 938 960 0.98
Sequence Information
- Coding Sequence
- ATGACCCGGACCTGCAGAATCTGTGGCGATACAAATGGGCGTTACTGGATCGAGACGCCGGTGGGTAAATATGGCGAGAAGACCTTCAATCAGCTGTTGCTGGAGCTAACCAAGATTGAGTTGACCATGGTCCAGGCCGAGAAGTTGCCACACTGGCTGTGCGCCAATTGCTCGCAGAAGTTGGAGAGCGCCTATGACTTTGTGCTACAGGCGAAACAGACGCACAAGCTGTGGCTGCAACAACTGGAGGATACGGGCCAGACAATGAGCTCGGGGGCCTTGGAGTGTCTGCGGGAGACGCCCATACATCTGTTTGAGATAGAGGATGTAACCATAAAAACCGAAGCGCTAGAGTCCACAGTGGCAGACAATGGGAATAGCTCCTCCGATCCACTAGTCCGTACACGCGTCAAAAAGCGCACCATCTTTCACTTTAGCGACACGGAGGATGACCAGGATGATGTGCCGCTGAGGCAACGCAGAACGGGCAGTCAagcgaacagcagcagcacatcagCGAAGCTGCACAAGTGCAATCTGTGCGGCAAATCCTTCAGATATATCACAAATCTGTATCGCCACAAGAAAAGGGATCACGGCTATCCAGTGCAGACAAAGGGTGAGAGCTCTGCCGAATCCTGCCAggacaacacacaaaaaagttcCAATTTGGAacaaaacgataatgatgataatgatgaagaGGGGGATGGGGATAACTACTACAAATGCGATCAGTGCGATAAATCGTACAAGTACATAATGGTGCTGGTCAAGCACAAGCAGAATGCCCACGAATCAGTCAATCAATATCAAATGCCCATCAAGGCAGGGCCCAAGCGAAGAAACAGAAGAGACGTGGGTGAGACGGCAGCAAGTCCAACTTCATCCGGCACATCCACACAACGAGCCAGAATCAGCAACGATAGTCTGGTTCATAGCCTCATCAAAACAGTAGAGCTGTCTGATGAGGATGGAAACAGCGACAGCGATAACTACTACAAGTGTGATCAGTGCCACAAATCGTACAAATACATTGTAAGCCTCATCAAGCACAAGCACAAGGATCACACGGAGGCTGACAAGAACTCGGACCCCGAGGATGATCAACCCTTGGCCTCCACATCTGCCGGCGCCTCCGCAGCCTCAGGCTCTGCCACCAAGGCATCGCGAATCAATCGTCGCGTTCAGGGCTTCGACCTGCATCGCTGCCAGCCGAATGGTGCGAAGGAAATTCAATGCATGATCTGTCTGCGGAAATTCACCAAGCTGCGCGAGCTGAGAGATCACCTGCGGGCGCATCCCACGGACTTTAATTTCCAGGCGCACGGCGAACCCATCGAACGCATTGCCGAGGGCTTCTTCAAGACGGCTGTGGAATCCACTGCGGAGGGTTTGAAGAAGAGAATTCAGCATGAGCTCAAGATGGGTGTCTTCGGACGCTTCTACTCCATTACCAACGAAGCGCGCTACGAAATGAGCTTGGACAGCTCGGACACGGATAGCGATGGCGATGCAGATGTTGTGCTGCGACGAAGCTATGCCTGCGAACTGTGCGACTCGCCGGAGGCCAGGTGGCCGCGCAAGTACCAGCTTCACGAGCATcacaggcagcagcacaccTGGGAAGAGGCGCCGCATGTCTGCCAGCGGTGCGACTCGCGTTTCCTCAGTCTCCAGCTGCTGGAGCATCACACCCTGCAGCTCTGCCAGAACACACTAAAGCGTTACATGTGCGACAAGTGCCCGCAGCGCTTCTTCTGGCGAAGAAATCTGCGTGCCCATTTGGTCGAGCATAAGAGCAAGCAAGACAATTATCCGTGCGACCAGTGCCAGCGCAGTTTTCAGGATAAAAGCGCCGTCACCAAGCACAAATTGATGATGCATCGCGATGAAAAGAATCAGCTTATACCCTGCCGCTGGTGCTCTCGGACCTTCTATCGTCCCGCGCTGCTGCACAAGCATGTCGAACGGCATGGCTTCACCGGCGATGATTTGCCTCTGGCCGAGACATTGCTGGCCGATGCAGCCAAGCCATCGGGTCCAAAGACTGTCCAGTGCAAGATCTGTGACCTGCAGTTCGTAAGCGTCGCAGATCTGCGCCGACACAATGCCATGCTGGGCCACAGTGAGCGGATAACCGACTACATGATCAGCACCGAGGCTggcttcgagctgctgctggaggatACAGATGACAGCGATGACGACACCACGGGGGGCAGGTCCTACTCGTGCGATCTCTGTCAGATGATGTTCCGTCGGCGCAGGGAGATGAGCGAGCATCAGTATTCGCTGCACGCCTTTGACAAGCTGCCATATGGCTGCGAGCATTGCATTTATAAGACCGTAGATAAGCTCATGCTGGAGCATCATCTGCGCACACAATGTATGAACAGCGACAAGCCCTTCAGCTGCTCCCGCTGCAGATACAAGTTCATGTGGAAGGAGAACCTGGAGCAGCACTTTGCCACACAGCATCCGAAGCAGCCGCCCGCCCAAGAGCAGTCGTCGATGCCCTTGCGGAGAAGGCGACGCTTCAGATACCAATGCCCACAGTGCTGGCGCTCGTTTGTGGTGCAGCCCAGCCTCGATAAGCACATAAGGGACATGCATGTGGCCAAGCGGAATCCGGGCAAGAAGTATCTCTGCTCGCTGTGCGGCCTGGAGTCACTGACGCCCAACAAGCTCAACATACATATGCGTCGCCACAACGGCGAAAAGCCCTTCAAATGCGATCTCTGCGACATGCGTTTCACCGTCCACTACGAACTGAAGGTGCATCGGCGGAAGCACACCGGCGAGCGGCCCTACCAGTGCACCTTCTGTGACAAGCATTTCGCGCGACCCGACAAGCTGAGACGCCATGTCTATATGCACAGTGCGCGTCGTTAG
- Protein Sequence
- MTRTCRICGDTNGRYWIETPVGKYGEKTFNQLLLELTKIELTMVQAEKLPHWLCANCSQKLESAYDFVLQAKQTHKLWLQQLEDTGQTMSSGALECLRETPIHLFEIEDVTIKTEALESTVADNGNSSSDPLVRTRVKKRTIFHFSDTEDDQDDVPLRQRRTGSQANSSSTSAKLHKCNLCGKSFRYITNLYRHKKRDHGYPVQTKGESSAESCQDNTQKSSNLEQNDNDDNDEEGDGDNYYKCDQCDKSYKYIMVLVKHKQNAHESVNQYQMPIKAGPKRRNRRDVGETAASPTSSGTSTQRARISNDSLVHSLIKTVELSDEDGNSDSDNYYKCDQCHKSYKYIVSLIKHKHKDHTEADKNSDPEDDQPLASTSAGASAASGSATKASRINRRVQGFDLHRCQPNGAKEIQCMICLRKFTKLRELRDHLRAHPTDFNFQAHGEPIERIAEGFFKTAVESTAEGLKKRIQHELKMGVFGRFYSITNEARYEMSLDSSDTDSDGDADVVLRRSYACELCDSPEARWPRKYQLHEHHRQQHTWEEAPHVCQRCDSRFLSLQLLEHHTLQLCQNTLKRYMCDKCPQRFFWRRNLRAHLVEHKSKQDNYPCDQCQRSFQDKSAVTKHKLMMHRDEKNQLIPCRWCSRTFYRPALLHKHVERHGFTGDDLPLAETLLADAAKPSGPKTVQCKICDLQFVSVADLRRHNAMLGHSERITDYMISTEAGFELLLEDTDDSDDDTTGGRSYSCDLCQMMFRRRREMSEHQYSLHAFDKLPYGCEHCIYKTVDKLMLEHHLRTQCMNSDKPFSCSRCRYKFMWKENLEQHFATQHPKQPPAQEQSSMPLRRRRRFRYQCPQCWRSFVVQPSLDKHIRDMHVAKRNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCDKHFARPDKLRRHVYMHSARR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00575022;
- 90% Identity
- -
- 80% Identity
- -