Dbif011121.1
Basic Information
- Insect
- Drosophila bifasciata
- Gene Symbol
- -
- Assembly
- GCA_009664405.1
- Location
- CM019043.1:42433196-42435930[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.063 4.2 7.8 5.9 3 23 267 287 265 287 0.96 2 12 4.6 3.1e+02 1.9 0.5 5 23 294 313 292 313 0.86 3 12 0.0019 0.12 12.6 1.1 1 23 320 345 320 345 0.96 4 12 0.00066 0.044 14.0 2.1 1 23 357 379 357 379 0.98 5 12 2.1e-06 0.00014 21.8 0.2 1 23 386 408 386 408 0.98 6 12 0.0061 0.41 11.0 0.1 1 23 414 436 414 436 0.98 7 12 0.0059 0.39 11.0 4.0 1 23 442 465 442 465 0.98 8 12 0.0081 0.54 10.6 3.9 1 23 471 493 471 493 0.96 9 12 0.00014 0.0091 16.1 3.6 2 23 500 521 499 521 0.96 10 12 3.6e-05 0.0024 18.0 0.3 1 23 637 660 637 660 0.96 11 12 0.0095 0.63 10.4 1.2 1 19 666 684 666 688 0.94 12 12 1.6e-06 0.0001 22.3 4.1 1 23 694 716 694 716 0.99
Sequence Information
- Coding Sequence
- ATGGATGAGGGGGCTCAGTACTCCATACAATCGGTGTGCCGCATTTGTCTGCAGCATCTGCAGAACGATGCCGCCTTCGATCTGTTCCTGGTCCCAGGTCTGGCCAAAAAACTCTGCGTTTGCACTCCTCTGTCCGTGGAGCAGCAGGATGGATATCCCAATAATCTGTGCACTAGCTGCTACGCCCGGCTGAACGAAACGCACGAGTTCCAGAAGCTGTGCGTGGAGTCGGTGCAGAAGTTCCAGGACATGCTGGCCAATAATGTCTTCTGCGTCGTCGCCACGGGCTCGCAGATAAAGAATTTTGATGTTCTGAATGTGGCTGGTCACGAGGGGGAACTGatgggggaggaggaggatcgCATCAACTTTGATCCCCTCTTGGACCACAAGATGGAGCTGATCGAGAACGAGGAGGAAGTCTTCAAGATGCTGGAGCATGTGGACAAGGAGGCCGAGGAGGCGGAGCAGGAGGTCAAGCAGGACGCTGATGACGATCATTTGAATGGCATATTTGCCGACGACTCTTCGGCTGAGAGTGGCGGCAGTGATATCGATGAAGACGTGGACTTTGAGCCCAACAGCAGCGATGGCGATGACGACGTTCCCCTGTCACAGCGTCTGCGTGTGGCTCCACGCCAATCGTCCAAGGGCAAATCCAAAAAATCTACTGCCACAGACGTCAAGGAAGAGGATGAGTACTTGTCGGGATCGGAAGCTGACGAGGACGGTGACAGCTCGAGGTCTAAACGTAGGAGGATTCCGCCCAGCGAACGTCACCTGCATCGCATCATCGACTGCCACATCTGCCACCAGAAATTCAAGAAAGCCATCCGCTACGAAGAGCACATGAAGCACCACAACGATCTCCTGCCCTTCCAGTGCAAGGTGGAGACCTGCCGGAAAGGCGGGCTACGCCTCCACATAGACCATGCCCACACCGAACTGTCTGAGGTGCACACGTGCAGCGTCGATGGCTGTGGGAAGAGCTTCCCGCGCATACGCCTGCTCACGTTCCACATGAAAAAGGTGCACAATATAGCAAAGTCGGCGGCCCCGCCACGCGACTATCCCTGCACGGAGTGCGAGAAGATATTCCGCTGTCCCATGGCCCTGAAGAAGCACATGTACAAGCACGATGGCAAGGAGCTGCCCTTTCCCTGCAACATCTGCGGCAAGCGGTTCGTGATCAACAGCGCGCTCAAGGATCATCTGATGCGACATGCGGGCATCAAGAACTATGTGTGCCCCTACTGCGGCGTGGGCAAGACAACGCGCCAGGAGTGGAACACCCACATCCTGACGCACACGCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCATGCCTCCCACAACAAGCAGAGCCTGGCCAATCACATCAAGATCGTCCACGAGAAGATCAAGAACTATGCCTGCCAGTACTGCGGCAAGACGTTCGGCAAGTCGCATGCCTGCAAGATCCATGAGATGACGCACACAGGAGAGAAACGCTGCGAGTGCAAgGTCTGTGGTAAGAAGTTCCTCTATCCAAAGAGTCTAACGAAGCATTTGAAGACGCACGAGAAGCGGGTACTTCGCGCCATCGAGACCTATCGCCAAAGGCAGGTAGAGATGGGCGAGGCAGCACCCGGGGAACAGTTGGAGAACCCCGCAGATGTTATGGGCGTGCCTGCTGCAGACGGAAGCGAACCGAGTGCAGGTGGAGATGCAGTGATGTCACAGAATGCCGCCGATGAGCTGCTCAAGGTTTGCGCTGAATCGGTGGCCACCATACCCAAGGATCCGCGACGCGTTCAACGCGTAGACATTTCCCAGCTGGCGGGCACTGCTGTCAATCCCATATCCTCGGTGTCGGTGCCATCGTGGTCGCCGCAGGAAGTGAACTTCACCAAGAAGGAGGGCAAGCACATTTGTCCGGGCTGTGGGCAGGGCTTCAACAACATTGGCAACATGAAGAGACACTACAAGATCATCCACGAGAAGGTCAAGGACTTTGCCTGTCGCTTCTGCCCGAAGCGGTTCGCGAAGGCACAGACACTGCGCCACCACGAATGGATCCACACGGGGGAGAAGCCGTTTGAGTGCAAGACCTGCGGCAcccatttccgccaggagacGGCCCTCAAGCGGCATCAGAGAACCCACGAGAACCGCCCGCCCGTCATCTCCTCGAAGTTCTATGCGGCCCgcgaggagctggaggagcaggagcgcaGCAAAAGGGAGGCCAGACGCAAGGCGGAGGCCAAGCGTAAGGAGATCGCTGACGCGGCCAAGGAGCAACTGTCGTCGCTGCACAAACTGGAGACGACCGACAGGAATCTGCACTCGTATGACGAGTACCAGGAGGCTGCCGCTGAGCGGGCAGCTGCCTCCGCCGAGCTGCAGGCGCAGCAGTTCGAGGAGAACGAGGTGAAGCGACGGGCAGACGAGGAGCGGCGCAAGATCCAGGAGGCTGCCTACGAGCAGCTGCAaagactgcagcagcagcaggagatcgACAAGGTGCAGACGTCCTACGATGGCTACTACGCGCAAAAGGCGCACGCGGATGGCACCAGCCTCGATGCCCTGAAAATGGATCATGTGTGA
- Protein Sequence
- MDEGAQYSIQSVCRICLQHLQNDAAFDLFLVPGLAKKLCVCTPLSVEQQDGYPNNLCTSCYARLNETHEFQKLCVESVQKFQDMLANNVFCVVATGSQIKNFDVLNVAGHEGELMGEEEDRINFDPLLDHKMELIENEEEVFKMLEHVDKEAEEAEQEVKQDADDDHLNGIFADDSSAESGGSDIDEDVDFEPNSSDGDDDVPLSQRLRVAPRQSSKGKSKKSTATDVKEEDEYLSGSEADEDGDSSRSKRRRIPPSERHLHRIIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCKVETCRKGGLRLHIDHAHTELSEVHTCSVDGCGKSFPRIRLLTFHMKKVHNIAKSAAPPRDYPCTECEKIFRCPMALKKHMYKHDGKELPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEKKFKCHICEHASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYPKSLTKHLKTHEKRVLRAIETYRQRQVEMGEAAPGEQLENPADVMGVPAADGSEPSAGGDAVMSQNAADELLKVCAESVATIPKDPRRVQRVDISQLAGTAVNPISSVSVPSWSPQEVNFTKKEGKHICPGCGQGFNNIGNMKRHYKIIHEKVKDFACRFCPKRFAKAQTLRHHEWIHTGEKPFECKTCGTHFRQETALKRHQRTHENRPPVISSKFYAAREELEEQERSKREARRKAEAKRKEIADAAKEQLSSLHKLETTDRNLHSYDEYQEAAAERAAASAELQAQQFEENEVKRRADEERRKIQEAAYEQLQRLQQQQEIDKVQTSYDGYYAQKAHADGTSLDALKMDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00575777;
- 90% Identity
- iTF_00481005;
- 80% Identity
- -