Dbif006412.1
Basic Information
- Insect
- Drosophila bifasciata
- Gene Symbol
- -
- Assembly
- GCA_009664405.1
- Location
- CM019044.1:44377959-44382560[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0013 0.084 13.1 1.2 1 23 218 240 218 240 0.96 2 20 0.0027 0.18 12.1 1.2 1 23 246 268 246 268 0.98 3 20 0.011 0.75 10.1 1.0 2 23 300 321 299 321 0.96 4 20 0.0061 0.41 11.0 3.7 1 23 394 417 394 417 0.94 5 20 2.5 1.7e+02 2.7 3.0 1 23 454 476 454 477 0.95 6 20 0.13 8.7 6.8 0.2 3 23 488 508 486 508 0.96 7 20 0.0041 0.28 11.5 0.8 1 23 585 608 585 608 0.97 8 20 0.0074 0.49 10.7 0.2 2 22 618 638 618 638 0.94 9 20 0.011 0.72 10.2 4.6 1 23 647 670 647 670 0.97 10 20 0.00091 0.06 13.6 1.6 2 23 697 718 696 718 0.97 11 20 7.1e-05 0.0047 17.0 2.0 3 23 728 748 726 748 0.97 12 20 0.056 3.7 7.9 2.5 1 23 901 924 901 924 0.93 13 20 0.012 0.81 10.0 0.1 2 22 932 952 931 952 0.94 14 20 0.0067 0.44 10.8 0.7 1 23 961 984 961 984 0.94 15 20 0.00014 0.0095 16.1 1.3 2 23 1006 1027 1005 1027 0.96 16 20 0.00011 0.0076 16.4 1.2 1 23 1034 1056 1034 1056 0.98 17 20 0.024 1.6 9.1 0.0 2 21 1083 1102 1082 1103 0.93 18 20 0.0096 0.64 10.3 3.9 1 23 1149 1172 1149 1172 0.96 19 20 0.041 2.8 8.3 0.4 1 23 1209 1232 1209 1232 0.95 20 20 0.00026 0.018 15.3 1.8 1 23 1256 1279 1256 1279 0.97
Sequence Information
- Coding Sequence
- ATGTTGCCCATCAATATTTGCCGTACCTGTGCCCTGGAAGACAGCGATTTGCTGCCCCTGTCCACTTCCTTGGACACGAACAcgaataaaagtgtatttgaTGTTCTACAAGAACTGACACAAATCGATTTCCTGCTGAGGAATGCTGACGACAATCTGCCCCAGCAACTGTGCAGATATTGCTTGGACAGTCTGAAGAACGCCTACGCCTTTGTGGAGCAGGCCAGAAGAGTCCActgggagctgctgctgcggctgcggggATGTCTGGAGGAGACTCCCATTGACATACCCGAGGAGCAAATTAAAGCAGAGATCGACATAGATGAGCACCAATCAGATTGCAGTGATTCTGGAGAGGCACAAAGATCGTCTGATGTGGAGTCGCCTGGAGTCGCAACGTGTCCCATTGATCACATATGTACGGCAGAATGTGCCAACGAGGAGCAAAATGCGGATGCGCTCCCAAACGATGAAGACGAGGATGtagatgagcagcagcagcagccctatGCCTTGCGGCGAAGTCTCCGCAAAGTCAAGCCACAGGCAGATAGTGAAGAGGAGGAAGGGTCGGTGCCACCCAATAAGCGGCGTCGTGGACGTCCACCTGGTGTCGGCAAAAACCATTCAAGGAAATCCGAAGGCCGTCATGCCTGTGAGACGTGCGGCAAAACGTTTTCCTGGTTGCGCGACATGAAGCGACATGCTCGCATCCACTACGAGAAGGCCTCGTTCGTGTGCGACATCTGTGGCAAGGGATTCCTGCGCAAGGACAAGTACCAGTTCCATCTGCGCACCCACGAGAAGCGCGAGGCCAAGTGCCAGGCCCTCCAGATGAAGAACGAGTGGCGCTACGCGGAGCGTTTGTACAGCTCCGGGCGCCTGAAGCGAATCCAATGCAAATTGTGTGGCCTTAAATGCCAGCGAATGGCCGATCTGCGATCCCATTTGATGGGTCACAGTTACATGGATAGAAAGTTCCCTCTGCATGCGGACAGCGATGTGGTCAGGGAACATTTTGCCAGCGTGCCCTTCGACAAGGAAAAGATCAGGCAGCGGGTGTGCGTGGAAATAGCCGAAGGGCAGCTGGAAAAGTACTCGTGTGTCGTCAATTTCCACGGCTACGAGCTGTGCCTGAGCGACTCCGACGACGAGCCTGCCGATGGAGAGCCACCGTATCACTGTGGCATGTGCAATCTGTCCTACACGCGCAAACATCGCCTCATACGGCACACGCTGGAGGAGCACTCCCAAACGGCCCTGGCGCTGCGCTGCAACCTGTGCAAAGTGGGTTTCGTGTGCGGAAAGCTCTTTGAACATCACCAGCGGACCCAGTGCCAGAGCAAGGTGAAACGCTATCGCTGCCGCAAGTGTCCGGGAAAGTTCATGTGGCTGGAGAACCTGGAGCAGCATGCCTGCTCCCATCACAAGGAGGAGCAATCGTATAGGCAAATCATCTGCTGCCTATGCGACGCACAGCTGCCCAGCTTGAGGCAGCTGCGCGCTCACCTGGCCACCCATCGACACGGCATGAGTGGCATTGATCCGGAGCAGAAGTCCGCCTTCTTTCGTTCGTACTATCCCAACGGGCTGGGTTGCAGCCTCTCCGAGCTGGCCTTACGCATTTCTGGGGACTACGAGGCCCAAGACTTTGGACGCTACTACAACGCCTGCACGGGCAGTGGTCAAGAGCTGGATCTCTTTGACTCCGACACGGAGGAGAGCGATGCAGAAAAGCCGCCGCCCACGCACACCTGCCTGCTGTGCGGAGAGACTGCCAGTCGGCTGGTCAAACTGCTGCAACATCAGCGAAGTCTCCACTCCGCAGAGGACACCACGTACCCCCGCTCTTGCCAGGAttgtggctctggcttcgtGTCCGATTCCTTGCTGCAGCAACATCGCAGACGTTCCTGTGGCAAGAAGCACTCGAAGTACCAGTGCCAGCGATGCGATCTACATTTTGTGTGGCAATCGAACTACGAGCAACATATGCGACTGTGCCACGACAAGGATGAGGATCCAGAGCAGTCGGAGGACGGCCAGCAGCAGGCTAGAACATATAAATCTTCGCCCGTCAAGCTACAGTGCGATGAATGTGAAAAGGTCTTCATTTGGCACAAGGATCTCACGCGTCACAAACGCATGCATCGCCCTCCGACGGCAGCCCAGTACGGGTGTGCCTATTGCGACCGCAAGTTCCATCGCAAGGATGGCCTCAAGTCCCACCTGCGGGTGCACAGcgaacaccagcagcagcagcaggaggagcagccctCCCCCCAGTCCACACCACCTACGAACAGTATTCAACGAATGTCCGAGGAGCAGCTGACCCAACTATGCCGTGCAAATGGCTGCAAGGAAATCCAGTGCATGATTTGTCTCTCGCGCCACTCAAAGATAGCCGATTTGAGGACTCACCTAAGCGGCCACCAGTATGCAGTGGACTTTCCACAGGAGCGGGATATTGCCAGTGCCTCGCGCTCGTTGTATCCCGAACTGAGCACTGTCCTGGACAAGCAGGAGCTGGTGGAGCGGATCATGATCGATGTGACCAGCGGCTTGGAGTTGGAGCGATTCATTTCCATAACCAACGAGGCTGGCATTGAGCTCTCGCTGGAGAGCAGCGAAACGGATACGGATTCAGAGCGGGAGGATGACGACGAGAGCTCTGAGGAAGCGGACCAGCGGCTGTACGCCTGCAACCTTTGCCAGCTGGAGGTGAAGCGAAAGCATCAGCTGTATGCCCACCACTTGGAACAGCACCAGTGGGAGGAGGCGTGGCTTGTGTGTGCCTACTGTCAGGCGAGGTTCGTGAGTGAGGCGCTGCTGGAGCATCACTACAGGTCGCTCTGCCGGAATCCCCACAAGCGTTTCCAGTGTCGCAAATGTCCGCTACGCTTTCGCTGGCGGGAGAACCTAAAGCTGCACATCAGTGCCTCCCATCAGCAGGGGGAACCGAGCCAAACAGCTGGGGAGGATCGCAGCATCCAGGCCGAGCTTGAGCTGCAGTGTGGCGAGTGCACTCGCACCTTCAAGATGCAGAAGGACCTCACGCGGCACTCGCTGATGCATGCCCAGGAAGCGAACATTTATCGCTGTCGCTGGTGTGCCCGCCGCTTCTACAGGAAGGCCAATCTCCTGCAGCACATTGAGCGGCATGGTATCGGCGCCAGCCAGCTGCCCTACGCGGAAGCTCTCCTCAATGCCTGCACACATCCAAATGGCCAGAAGAGCGTGGAGTGCAAAGTGTGCAGCCTGAGCTTCCCCAGCATCGCTGCCCTGCGCGTGCACTTGGAGACGACGGCCGAGGGCAGCCACCAAGAGCTGTCGTCCCTGCAGAACTACTCGATAACCAACCAAATGGGATTCGAGCTGCACTTGGATGATTCGGAGACGGATGGGGAGGAGTCCAAGCCACCGGGCACGCCCGCCTTCTACACCTGTGGCATGTGCCAGCTGCGCTGTGTGCGCAAGTACGAGCTGCATCAGCACCAGCAGGCCATGCACAGGCTGGAGAAGATACCCGACGGTTGCGATCGGTGCATTTTCAAGAGCGTCTGCCCCGATCTCATTGCGCACCACAAGCGGGTGCAGTGCCACAGCCAGGAGAAGCAGTTCAACTGCGCCAGGTGCGGCTACAAGTTCATGTGGGAGTCCAATCTCCTGCTGCACATGCAACTGCAGCATGGAAACCCCGACGACCAGGAGGATCCACCCCTGGATGAGCCCGCGGAGCAGAAGGCTGTGTGCCAGATCTTTAAGTGCGGCCTGTGCCCCAGGAAGTACAATCGCAAGGATCGGCTGACGGCGCACGTGAAGAAGTTCCACCTCCCAGGGGCAGAGACTCCAGGGGATTCCAGCGACGCCATACAGGCGTCGGCCATTCGGCCCACGTCGCCCAAGGAGCCGAAACGCTTTCTATGCGCCTTCTGTGGCAAAGCAGGCACGGCCCTCAAGAACCATCGACTGCAGCAGGGGCACTATGACGAGGCCAGCCAGACTGCTGCAAGGCGCACGGTCCTAGAGCAGTTTACAGTatag
- Protein Sequence
- MLPINICRTCALEDSDLLPLSTSLDTNTNKSVFDVLQELTQIDFLLRNADDNLPQQLCRYCLDSLKNAYAFVEQARRVHWELLLRLRGCLEETPIDIPEEQIKAEIDIDEHQSDCSDSGEAQRSSDVESPGVATCPIDHICTAECANEEQNADALPNDEDEDVDEQQQQPYALRRSLRKVKPQADSEEEEGSVPPNKRRRGRPPGVGKNHSRKSEGRHACETCGKTFSWLRDMKRHARIHYEKASFVCDICGKGFLRKDKYQFHLRTHEKREAKCQALQMKNEWRYAERLYSSGRLKRIQCKLCGLKCQRMADLRSHLMGHSYMDRKFPLHADSDVVREHFASVPFDKEKIRQRVCVEIAEGQLEKYSCVVNFHGYELCLSDSDDEPADGEPPYHCGMCNLSYTRKHRLIRHTLEEHSQTALALRCNLCKVGFVCGKLFEHHQRTQCQSKVKRYRCRKCPGKFMWLENLEQHACSHHKEEQSYRQIICCLCDAQLPSLRQLRAHLATHRHGMSGIDPEQKSAFFRSYYPNGLGCSLSELALRISGDYEAQDFGRYYNACTGSGQELDLFDSDTEESDAEKPPPTHTCLLCGETASRLVKLLQHQRSLHSAEDTTYPRSCQDCGSGFVSDSLLQQHRRRSCGKKHSKYQCQRCDLHFVWQSNYEQHMRLCHDKDEDPEQSEDGQQQARTYKSSPVKLQCDECEKVFIWHKDLTRHKRMHRPPTAAQYGCAYCDRKFHRKDGLKSHLRVHSEHQQQQQEEQPSPQSTPPTNSIQRMSEEQLTQLCRANGCKEIQCMICLSRHSKIADLRTHLSGHQYAVDFPQERDIASASRSLYPELSTVLDKQELVERIMIDVTSGLELERFISITNEAGIELSLESSETDTDSEREDDDESSEEADQRLYACNLCQLEVKRKHQLYAHHLEQHQWEEAWLVCAYCQARFVSEALLEHHYRSLCRNPHKRFQCRKCPLRFRWRENLKLHISASHQQGEPSQTAGEDRSIQAELELQCGECTRTFKMQKDLTRHSLMHAQEANIYRCRWCARRFYRKANLLQHIERHGIGASQLPYAEALLNACTHPNGQKSVECKVCSLSFPSIAALRVHLETTAEGSHQELSSLQNYSITNQMGFELHLDDSETDGEESKPPGTPAFYTCGMCQLRCVRKYELHQHQQAMHRLEKIPDGCDRCIFKSVCPDLIAHHKRVQCHSQEKQFNCARCGYKFMWESNLLLHMQLQHGNPDDQEDPPLDEPAEQKAVCQIFKCGLCPRKYNRKDRLTAHVKKFHLPGAETPGDSSDAIQASAIRPTSPKEPKRFLCAFCGKAGTALKNHRLQQGHYDEASQTAARRTVLEQFTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -