Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.063 84 3.0 0.7 18 27 16 25 12 30 0.86

2 6 0.00099 1.3 8.8 2.7 16 44 38 63 26 63 0.86

3 6 8.5 1.1e+04 -3.8 0.0 13 20 100 107 98 107 0.80

4 6 0.97 1.3e+03 -0.8 0.4 28 40 158 170 151 172 0.73

5 6 0.00031 0.41 10.4 0.1 11 28 271 286 263 287 0.81

6 6 8.4e-08 0.00011 21.8 4.6 3 44 287 323 285 323 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.063	84	3.0	0.7	18	27	16	25	12	30	0.86
2	6	0.00099	1.3	8.8	2.7	16	44	38	63	26	63	0.86
3	6	8.5	1.1e+04	-3.8	0.0	13	20	100	107	98	107	0.80
4	6	0.97	1.3e+03	-0.8	0.4	28	40	158	170	151	172	0.73
5	6	0.00031	0.41	10.4	0.1	11	28	271	286	263	287	0.81
6	6	8.4e-08	0.00011	21.8	4.6	3	44	287	323	285	323	0.95

Coding Sequence: ATGCGGCTCACTTTCGAACGCCTCTCGGGCGGCTGCAACCTGCACCGTTGCAAGCTGTGCGGCAAGGTCGTCACGCACATCCGCAACCACTACCACGTCCACTTCCCCGGCCGCTTCGAGTGCCCGCTGTGCCGGGCCACCTACACGCGCAGCGACAACCTGCGCACCCACTGCAAGTTCAAGCATCCAATGTACAACCCGGACACGCGCAAGTTCGACAATCTGCTGTCGGGCTCCTCGGCACGGCCGCAGACGATCATCATCGAGGAGAGCGACGACAATGAGGGGGAAGAGGAGCAGCGTGGTATGGCCAACTGCATGCGGCAGAATTTCCATCAGTATCTGGCCCAGATGAAACAGTTTGCACCCCCAGATCCTCATGAGGCCATTGAGACAATGTGCAATAGCAGccgcaatagcaacagcaacagcaacaacgcaACAAATGCCAATCAAACGGAAGCTACTACAACTACTACTAATAGCACCAGCGCACGGAACCACCTCTCGACACCGCTCTCGACCTCCTCCTCGGCCTCGCCGCCGCCGGGCGTCTACGGCATGCACCTGTCGGCGGCCCTCAAGAGCGAGTACCATCCGCTGCACTACATACGCGCCGCCGCTGGCAACGGGCACAGCAATCCCGCCGGCACGCCGCCCGCGCACGGCTACAGTGCGGCCCAGGCTGCGGCTGCCGCTTTGGGTGGCGCCGCCACACCCACCGGTgccggcggtggcggtggcggtggcgggggCCACAATTCACATCACACCATGTCCTATCACAACATGTTCACGCCGTCCCGCGATCCCGGCACAATGTGGCGCTGCCGCTCGTGCGGCAAGGAGGTAACCAATCGCTGGCAccacttccactcccacaCCGCCCAGCGGTCCATGTGCCCATACTGCCCGGCCACCTACAGTCGGATCGATACGTTGCGATCGCACCTGCGCGTCAAGCATCCGGATCGCCTGCTCAAGCTGAATTCGTCCATTTAA
Protein Sequence: MRLTFERLSGGCNLHRCKLCGKVVTHIRNHYHVHFPGRFECPLCRATYTRSDNLRTHCKFKHPMYNPDTRKFDNLLSGSSARPQTIIIEESDDNEGEEEQRGMANCMRQNFHQYLAQMKQFAPPDPHEAIETMCNSSRNSNSNSNNATNANQTEATTTTTNSTSARNHLSTPLSTSSSASPPPGVYGMHLSAALKSEYHPLHYIRAAAGNGHSNPAGTPPAHGYSAAQAAAAALGGAATPTGAGGGGGGGGGHNSHHTMSYHNMFTPSRDPGTMWRCRSCGKEVTNRWHHFHSHTAQRSMCPYCPATYSRIDTLRSHLRVKHPDRLLKLNSSI

Sequence clustering based on sequence similarity using MMseqs2