Dbif007115.1
Basic Information
- Insect
- Drosophila bifasciata
- Gene Symbol
- -
- Assembly
- GCA_009664405.1
- Location
- CM019043.1:4844003-4848817[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.7e-12 1.6e-08 33.8 0.0 1 40 547 587 547 590 0.90 2 4 4.8e-14 8.8e-11 41.1 0.1 2 39 602 639 601 642 0.94 3 4 1.1e-17 2.1e-14 52.7 0.0 1 45 656 701 656 701 0.98 4 4 1.1e-19 2.1e-16 59.1 0.0 1 43 708 751 708 752 0.97
Sequence Information
- Coding Sequence
- atggacggacggacggacggacggacggaggcTGCCTCGTCCGCTTGCGCACTgcttaaaagaaaaacttgtgAAGTAAATATTTGTCTGTCCAAttgctgcggcggctgccaACTGCAGCGGattgggactgagactgagactgggagCTGGTTTTGGGGTGTGGGCGTTGGCATTGGCCATGGCGAAAGTGTTGTTGGAACTGGGCTGTGCTTTGGATGGACACCACTGCGGACTGTGGACACTGGTGACCATGCCAAGACAAGCGACGCCGTAATGACTGTCACAGGGTTCCATGGACAAAAAGACAGACGGGAGGGCCTCTTGCGCACCGCCGAACAGCTGAAGATCAAAGGCCTCTGCGAGACAGCGGAAAACGCGGACGATTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATCCAGCAGGCGGTCGTGGGGAGCATCGGCCAGAACCAGACCTCCATTGTGAGCCTACAGCAAACGGCCGAGGGCAATTATATACCCGTGCCGGGCACCGGTGACGAGTCGGACGTGGATCACGATCACGATCACGACCACTCCCACGATCACTCTCACAATCTATCACACTCCCACGACCACGATCACGAGCAAGAGCACGAGAGCAAGCCGAGCAAGATCTGCAAAACAGAGCAATCGCTGGCCTCCCCGTCGTCCAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACCTCAGCGGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgaCTAGTTTAGGCATGGGCATGAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTTACGGAGCACGTCGACCTCTCGTGCAACCCCAGTACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCACCTGGCGCAGCAGATCCATCGACTCGATCAATCTCCCATGCATTCGATAGCCCATCATCACACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAGCACCTGGCGGCTGCACAGCAGCATGCGATCTCCcacgcccagcagcagcatgcccATCATCAggcccagcaacagcagcagcagcagcaacacctcCATGCCCAGCAGCTGATGGCCCAGAGCcaggctcagcagcagcaacaacaacagcagcagcagcagcagcatcagcaacaacaacagcagcagcatcatcagcagcaacagcaggcggcagcagcggccgcGGCAGCTGTGCACGCCCAGCATGGTGGGCATGTGACGCACGCAGAGATCAGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAAATAAAGCACGAGCCTGGGATGATTATAACGCCGGAGATTGTCAATATGATGTCCTCAGGGCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCCAATGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAACTTGGATCAGCAGCATGGAGGAGGGCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAACGCCTTGGAGGCGTTGCGCTCGGGCCAGATATCCGCCAATAAGGCGTCGAAAGCCTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGTGAGGGCATCCGCCTGGCGGCGCCGTTCAATGCCGCACCAACCACATGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACTCCATGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCAGTGCGGGTTGGCCAAATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGGGGCAAGTACGATGTGGTGGCCAACACTAGCGGCGTGTCGCTGATGAACACCTCGGGCAACACCACGGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGtTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCATCGCCGCATCCGCCAACGCCCCAGCATCATAGCACACCGCAGCATCACAGCTCGTCCCAGGGGCCGCCAACGCCGCAGCATATGCAACAGCATGTGGTGCacatgcagcaacagcaatcacCTCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTGACGTCAAGCAGCCAGGTGGTGCAtagccaacaacagcaacagcagcagcagcagcttcagcagaTCTATCAGCACCATGGCACGCCCGAGCGTAGTTGAGAATCACTGCATGCTGCGGCAATAATGGGCAGCACCGgtggaggagtaggagtaggaggaggatcaggtggaggtggtggtggctctagcaccagcaccaccacggCTAGCACCACGCCCTTTGCCAGCATATCAGCGTTGGTCAGCGCACCGGCTGTCGCTCCGCCAGCCTCAGCcccaggcacagccacagcagcagcaactggcaCCAGCAAGCGCAAGAAATCGTCCAAACAAAAGCGTTGA
- Protein Sequence
- MDGRTDGRTEAASSACALLKRKTCEVNICLSNCCGGCQLQRIGTETETGSWFWGVGVGIGHGESVVGTGLCFGWTPLRTVDTGDHAKTSDAVMTVTGFHGQKDRREGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIGQNQTSIVSLQQTAEGNYIPVPGTGDESDVDHDHDHDHSHDHSHNLSHSHDHDHEQEHESKPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTSAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHAISHAQQQHAHHQAQQQQQQQQHLHAQQLMAQSQAQQQQQQQQQQQQHQQQQQQQHHQQQQQAAAAAAAAVHAQHGGHVTHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQLQQIYQHHGTPERS*ESLHAAAIMGSTGGGVGVGGGSGGGGGGSSTSTTTASTTPFASISALVSAPAVAPPASAPGTATAAATGTSKRKKSSKQKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -