Dbia006857.1
Basic Information
- Insect
- Drosophila biarmipes
- Gene Symbol
- -
- Assembly
- GCA_018148935.1
- Location
- JAECYG010000101.1:16216005-16222147[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0086 0.52 10.7 0.3 1 23 1016 1039 1016 1039 0.95 2 13 6.2 3.7e+02 1.7 0.2 1 23 1189 1211 1189 1211 0.91 3 13 0.00014 0.0082 16.3 2.7 2 23 1214 1235 1214 1235 0.97 4 13 5.3e-05 0.0032 17.6 0.2 3 23 1243 1263 1241 1263 0.98 5 13 4.4e-07 2.6e-05 24.2 4.1 2 23 1270 1291 1269 1291 0.97 6 13 3.9 2.3e+02 2.3 0.4 5 23 1304 1322 1301 1322 0.95 7 13 1 62 4.1 5.4 3 23 1329 1350 1327 1350 0.93 8 13 0.11 6.6 7.2 0.2 2 23 1361 1381 1360 1381 0.96 9 13 0.00011 0.0067 16.6 0.3 1 19 1387 1405 1387 1409 0.95 10 13 2.7e-05 0.0016 18.6 0.4 1 23 1417 1439 1417 1439 0.98 11 13 7.9e-05 0.0047 17.1 7.6 1 23 1445 1467 1445 1468 0.96 12 13 0.00017 0.01 16.0 6.5 1 23 1473 1495 1473 1495 0.98 13 13 0.002 0.12 12.6 6.1 1 23 1501 1523 1501 1524 0.96
Sequence Information
- Coding Sequence
- ATGGTCGACAACAGTGTCCAGTGCCCCGTGTGCACCTTGTACCTGCATGCGGGCATGAATCTCTCCGATCACTTGGAGACCCATCCCAAGGAACAGGTGATCAAGGCGCTGGTGCAGATGACGATCGTCGGGAGCGGCGGCAACAGCATGGGCAGTGTTCTGGCTGCCGCCATGCTGGCAGGAGGCAGTGGAGGAGGTGGATCGAGTGGTGGCGACGCCAGCAGTGCGGTTGATGAGAAACCAGCCGACTTATCACCGCCGCCCGGCGCAGATGTCAAACCAGTTGTGGCCAATACCATATCAGCAGTAGCTTCGGCAGCAGCGTCCGTGGTGCCGCCAGCACCGCCACCGCTCTCCTCCTCCCTCGCGGCAGCCTGCTCCAGCGGAGCCGCCTCATCCACGGCCAGCTCCCCACCCACCACCTCCTCCTCCTCCGCAAGCAGCAGCAGCAGCAGCAACAGCAACAAACCGAGCAATCCACCGATGAAAGCACTGAAATGCGCACCGCCCACGACTGAGGCGCGAGCCAATACACCCGCACATCCCACCACGAGCAGCATGTCCAATTTGTACCAGCCCTCGCAGTTCAGCTATGCCACAGCTTTGCCCCCACCTCCGCCGCTGCAGCTATTTACGCAGCAGCAGCATCAACATCCGACGGTCGCTCCGTCGCAAACGCAGCAGTCGCACCAGAAACCACCTCCCGCCTACGGAGCCGCCATCAGTCAAATACGATCTCAGCACAACCAAAACAAGCAGCAGCCACAGCCTCAAAACGTGGCCATGCAGCACAACCTAGCCCTGGCACCACCGACAACTGCACCGGCTGCAGCCACACTCGCCTCCGCTGGTGGTGGCAAGCAGCCCACCCTGCTGAACGCTGCGGCGGCGGCGGCCTGTGCCTCGCCAGCCTCGTCAACCGCCTCTTCATCAGTGCTCCGGTATGCGGAGTCTCCGGTGGCCCACTACTTGGAGCGCGAGAATGGCGACTTCATTGTCCAGGAGACGCCCAAGCATATTGTGGAGTGTGTGGAGAAGGAGGACGGGGAGTTCTCCGTCATCGAGCGCATTTACCAATCCCCGCCGAGTGTCCTGCACATACACGATGACGATGAGGACGAAGAGGACGAGGAGGAGGAGGACGACCACGATGATCCGCCGGAGGAGGAGGACGGCGACGATGAGCGGGACGAGAACAGCCACAGCCGCAATGTGGGCAAGACAACGAAAAAGGCTCGCAAGACGAAGCCCAAGCGGAGCTCCAAGCGGGTCTCGGACGACGAGGAGTTCATGAGCCTGAGCAGCGGATGCGAGAGTGAGCTGGAGAGGGAGCGTAAGCAGGAGCAGCCAAATGCGGCAGCACCTCTGCCGCCCCCACTGTGCACCGCCCCTTCAACGAGCACGGCTGGTGCTTACGCCTCCTCCTCCAACCTGGCGGATAATCATTCCAATTCCGCTTCCAACTCCGCCTCCAATTCAAACTCCACCGCAACCACCAAGTCCAAGAAGAATCGAATCACCGTGCTCAGCGATGTGCCGCTCAACATGAATGAGTATCTTGATCTGATGGGCAACATCGTAGCCTCGAGTCGCATTGGCGCAGGTCGTCCCTTCGCCGCTGTGGCTCCCATACCACTGGTTAAGGTGGAGAAGGAGGAACCTTTGGATGACTATGACAGTGCGGGAGGGGCAGCGGCAGCAGCGGCTGCTAATGAACTGGAGCAGAAGCCGAGCTTGGAGCACGGCACCACCAGCGTCATTCGTATGGCAAGCACGGCTGCCGCGACGACGACGTCTGCGACGGCTGCTGGCGTGCCTCCCGAGGATCTCACCCAGCCGCCGCCGACCCTGAAGGTCGAGCCGCCACCGCTGGCCGCTTCGAGCACCACGTTCGTGGTGAACGCCAGTACCGGTGGCTTCCCCTCGGCGGGATCCGTCTTCGCCAGCAGCAGTAGTGGCTGTTCCAAGGCACCGGCCAAGCCGGGCGATGAGTACATCCTGCCGGACAACAACATGGAAGTGGATGAGATTGTGATATCCTCGTCGTCTTCCTACACCTCCTCAGCGGCCCAGGTGCAGGCCACGCTGCAGCCGCCGGACTTTAACTTTCTGTATCACCAGACCACGACCACGGCCACGACGGCCACCTACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTCAGCGATGCCACCAATGCGGCCACGTTGGCATCGTCGTCCAGTAACTCCCTGGATCACGACTCGATGAATGCAACATTCCGGGTGGCCAAGACGCAGTCGCTGCACTCATGGTACCAGCAGGAGCCGGAGCACGATCCGCAGAACCCGGGCGGCGTGGAATCGGGAACAGCCACGCCCTCCAATCAGAGCCAGGATGTGGTCAGCCACCAGCCCACCAATTTCAATGCAGCTCTGGCGGCCGTCGATTGCTGCAGCGTTGCCCTGGACGAGGATGCCAAGTATCTGGACCTGGATGCCTGCAAGCGGGAGCAGCTGAGCAGCAGTAGCAACCTTCCTTCGGCCTCCGCGTCCACCACGTCGTCTTCGTTCGCCGGCGCTGGCACTGAGAGCAGCTTGGTTGGTGGCCTGAACATCCGCACCGATGAGAAGATGCCCGCCAAGGGCGAAATCTCCGAGCAGGAGAGCAACTGCGACATCGAGAACTCCTGGAGTGAGTCGGTTTATGGTGAAATTTCGCAGCGGTATTTCAGGAACCAGTTTTCCGGAGGCTACAATCCCGACTGGCGACAGGATTACTACCCGGCCCAGGATCTCAGCGCCCAGCAGAGGGAGCAAAAGCGATTCGATTTTAATGCGGTTGATGACGAGGCTTCATCTAGCTCGAGAAAGAGTCAACTAACGGATGGCATCCCAGCTGCGGCCACCTCCTCCGCTTCCACGTCATCGGCTTTGCTGGCGGGTCCACCAATAGCTTCGACATCGCGGGCTGCCGCAGAGGCGGCAGCGGAGGCGGCTGCTCTGGCGCAACGGAAGCCGCAGCGCCGCAAGCTCTACAAGTGTCCCCACTGCGAGGCGATCTTCGAGAAGCTCAAGGAGCGCAATGCGCACATGATTGGCGAGCACAACTATGTGCGTCAGAACCGTCGGCTCATCTGCACCCAGCCGCAGGTCAGCGCCTCGATGCTGCCGCCGCAACAGCAGATGATCCTGCAGGCTGGCGAGGCTCTACAAGAGGACTCCAAGGATGGCATTGTCAAGATAAAACAGGAGCAGTGCCAGGAGAAGCAGGATCTGCACGAGCATATGCACGCCCATTCCGACCTGCTGGCGGATGTCAAGGACTCCGAGCTGCTGGGCATCGGTGGCGATGGCGACGGCGAAGTGGATGGCGACTTTAAGCCACCCAGCCAGTTGGATGAGAAGCCCACGCTGCCGACGCTGGCCATGACAACGCCGGCTGCCAAATTGGCCGCTCTCTACCGCATGCTTATCGCCTACAATGAGTCCAAGCTCGGCCAGGAGCGCAACAACCTCAGCGAGCTGGAGCAGAAGGCCATGGAGAAGTCCATCTTTCTGTGCTACGTCTGCCGCACAGACTTCCCGTCCGTGAAGCTCTACGACGCCCATCTCACCGAGCATCCGGCCGAGTGCTTCACCTGCGGCAAGAAGTTCTACCGCTGGAAGAACTTCTCATTGCACCTGAAGCGTCACTTGGGCTGGAAGGAGTTCGGCTGCTACGTCTGCGACAAGAAGTTCGTGGTGCGCAGCGCCCTCGTGGAGCACATGCGGATGCACACGGGCCAAACGCCTCTCAAGTGCAAGATATGCGGCAAAAAATTCAAGCGCTACTCGAATCTGACGCAACACCGCAAGCGGCACACCAAGATGATGGTGCGCAAAAAGGAGTACGTGTGCCACTGCGGCGAGGTGCTGCCCTCGAAGGCGCGCTTCCTGTGGCACAAGGAGACGCACGACCTGAAGCCCAAGTGCTGTCCGTACTGCTGCGATCGGTTCGTGCATGCCAACTCGCTGCGCCGCCACATCCGGCTGGCGCACTCCGACAAGTTCGACTACGCCGAGCCGATGGAGTGCCCCATGTGCAAGCAGATCTTCGCCAAGACGTCCATCAAGGCGCACATGGCGACGCACTCGACGGAGCCGCAGTACGACTGCGCCATTTGCAGCAAGAGCTTCTCCACCAAATGGAATCTCAAAATCCACTCGTGGGTGCACGCCAACCGGACGGCCAAGCCATTCAAGTGCGAGTACTGCCCCAAGGCGTTTGTGCGCGAGCTGGACTTCAAGAACCACATCAACGCGCATAAGCAGATCAAGCCGTACACGTGCGAGTACTGCGGCTGCAAGTTCATCCGCAAGTACAACTACATGCGGCACCGGCGCGAGCATCACGGCACCAAAAAGTTCACCTGCGACCAGTGCGACAAGTCCTTCCATCGGCACTACTATCTGATCGAGCACCGGCGCATGCACACCGGCGAGCGGCCGTTCACCTGCACCATCTGCGGCAAGAGCTCCACCACGAAGACCAACCATAACAAGCATCTGAAGATCCACCATTCGCGCGACCCCTTCACCGTGGAGGCCTAA
- Protein Sequence
- MVDNSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGSGGNSMGSVLAAAMLAGGSGGGGSSGGDASSAVDEKPADLSPPPGADVKPVVANTISAVASAAASVVPPAPPPLSSSLAAACSSGAASSTASSPPTTSSSSASSSSSSNSNKPSNPPMKALKCAPPTTEARANTPAHPTTSSMSNLYQPSQFSYATALPPPPPLQLFTQQQHQHPTVAPSQTQQSHQKPPPAYGAAISQIRSQHNQNKQQPQPQNVAMQHNLALAPPTTAPAAATLASAGGGKQPTLLNAAAAAACASPASSTASSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDEEDEEEEDDHDDPPEEEDGDDERDENSHSRNVGKTTKKARKTKPKRSSKRVSDDEEFMSLSSGCESELERERKQEQPNAAAPLPPPLCTAPSTSTAGAYASSSNLADNHSNSASNSASNSNSTATTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGAGRPFAAVAPIPLVKVEKEEPLDDYDSAGGAAAAAAANELEQKPSLEHGTTSVIRMASTAAATTTSATAAGVPPEDLTQPPPTLKVEPPPLAASSTTFVVNASTGGFPSAGSVFASSSSGCSKAPAKPGDEYILPDNNMEVDEIVISSSSSYTSSAAQVQATLQPPDFNFLYHQTTTTATTATYFXXXXXXXXXXXXXXXXXXGVSDATNAATLASSSSNSLDHDSMNATFRVAKTQSLHSWYQQEPEHDPQNPGGVESGTATPSNQSQDVVSHQPTNFNAALAAVDCCSVALDEDAKYLDLDACKREQLSSSSNLPSASASTTSSSFAGAGTESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSESVYGEISQRYFRNQFSGGYNPDWRQDYYPAQDLSAQQREQKRFDFNAVDDEASSSSRKSQLTDGIPAAATSSASTSSALLAGPPIASTSRAAAEAAAEAAALAQRKPQRRKLYKCPHCEAIFEKLKERNAHMIGEHNYVRQNRRLICTQPQVSASMLPPQQQMILQAGEALQEDSKDGIVKIKQEQCQEKQDLHEHMHAHSDLLADVKDSELLGIGGDGDGEVDGDFKPPSQLDEKPTLPTLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTEPQYDCAICSKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKSFHRHYYLIEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -