Basic Information

Insect: Drosophila biarmipes
Gene Symbol: pita
Assembly: GCA_018148935.1
Location: JAECYG010000260.1:2303832-2306265[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00067 0.04 14.1 0.1 1 23 241 263 241 263 0.96

2 10 2.5e-05 0.0015 18.6 3.4 1 23 269 291 269 291 0.94

3 10 1.8e-06 0.0001 22.3 2.7 1 23 297 319 297 319 0.99

4 10 0.04 2.4 8.5 0.3 1 23 325 347 325 347 0.96

5 10 0.0001 0.0061 16.7 0.3 1 23 353 375 353 375 0.95

6 10 4.9e-06 0.00029 20.9 0.8 1 23 381 403 381 403 0.94

7 10 4.2e-05 0.0025 17.9 4.8 1 23 409 431 409 431 0.98

8 10 0.00022 0.013 15.7 0.6 1 23 439 461 439 461 0.98

9 10 0.43 25 5.3 0.0 2 23 467 488 466 488 0.95

10 10 0.05 3 8.3 3.8 1 23 494 517 494 517 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00067	0.04	14.1	0.1	1	23	241	263	241	263	0.96
2	10	2.5e-05	0.0015	18.6	3.4	1	23	269	291	269	291	0.94
3	10	1.8e-06	0.0001	22.3	2.7	1	23	297	319	297	319	0.99
4	10	0.04	2.4	8.5	0.3	1	23	325	347	325	347	0.96
5	10	0.0001	0.0061	16.7	0.3	1	23	353	375	353	375	0.95
6	10	4.9e-06	0.00029	20.9	0.8	1	23	381	403	381	403	0.94
7	10	4.2e-05	0.0025	17.9	4.8	1	23	409	431	409	431	0.98
8	10	0.00022	0.013	15.7	0.6	1	23	439	461	439	461	0.98
9	10	0.43	25	5.3	0.0	2	23	467	488	466	488	0.95
10	10	0.05	3	8.3	3.8	1	23	494	517	494	517	0.91

Sequence Information

Coding Sequence: ATGATAGATCGGGTCTACGCCGGCGACGGAATGCCCGGCCACATCTGCCTCGAATGCCGCCTTCTCTTCGAGCACTGCTACCGCTTCAAGCAGATGTGCAAGCGCGCGGAGACCCTGCTCCGGCAGTACCCACTGACCGGAAACTGGCCCGCGCCGCTGGAGAAGCCGCGGGCTCCCATGATGACGGTGGCGCCCAAGAAGGTGGTGGTCATACCGGCTGCAGCGGCACCCGAGGCTCCCGCTCCCGAGACCCCCAAAAAGCTGCTGAACACCCTGGCCAAGTCCACCCCGATGGTCATCGAGAATGTCCAGGTGCTGGAGACCTCCCTGCTGCCCCACAGGAAGGTGGCCGTCTCCTCGCCAGTCACCACCAGCCGGCGGTCCCACGCCTACGAGCTGAAGGTGGAGAACAACCAGGAGCTCTCCATGGACGACGTGCAGAACATGCTGGAGGACATGGCCAACGAGCTGGACAAGGAGTTCGAGTCCGAGGCGGCTCCCAAGGCCTCTCCCGTGAAGCCCAAGGTGTTGAACAAGTCGTCGATCAGGATCCTCAACAAGGGACCCTCTGCGCCGGTGGAACCGCGCCTGGCCACGCCCCAAGTGAAGCGGGATGACAGCGGCAATGTGGCCATTGTGACCGAGGTTCTGGATGCGGAGGTGCCGCTAGACGACCAGGATGATCCCACGAAGAACGCCGAGACGGTGGCCACCGACGTGTTTCCGTGTCCCGACTGCGAGCGCTCCTTTCCGCTGCAGCAGCTGCTCGACATCCATCGGCTGAACCACACGCGCTCGCGCAGCTTCCAGTGTCCCCACTGCGAGAAGAGCTTCTTCTCCAAGTACGACCTGGCCAAGCACAATTTCATCCACACCGGCGAGCGACCCTTCAAGTGCGCCGTCTGCAACAAGGGCTTCACCCGGAAGGCCCTGCTCCACCGCCACGAGCGCACGCACACGGACGTGCCCAAGTTCATCTGCGTGTACTGCGAGAAGCCCTTCCTGTCGCGCCAGGAGATGGAGAAGCACGCCGAGCGGCACCAGAAGAAGCGCCCCTTCCAGTGCGGCGTGTGCACCAAGTCGTTTGCCTTCAAGCAGGGATTGGAGCGCCATGAGGTTGTCCATTCCTCCAATCTTCCCTTCCCCTGCCAGCACTGCGAGCGGAGCTTCTCCACCGCCTCCAAGCTGGCCCGACATCTGGTGGCCCACGCCGGCAAGAGGGCCTATCCCTGCAAGTACTGCCCCAAGTCGTACATGCTGTCGCACCATCTCTCGCGGCACCTGCGCATGCACACGCAGACCTCGGACGCCTCGTTCGTGTGCAGCGACTGCAAGATCTCGTACAGCACCTACAACAGCCTGCTGGAGCACTCGAGAATCCATGCCACGGCCACTCTGAAGTGTCCCATGTGCCGGGAGCAGATCGAGGATGCGGACAGCGTTGACGCCCACATGGAGCAGCACAAGGAGAGCGAGCGCCACGCCTGCGAGTTCTGCGACCACATCTTCCTGACCCAGAGCTGCCTGCAGCGGCACATCGAGGACGACCATGTGATGGACATGGAGCCGTACCAAACCGAAGATTACGAGGAGGAGGGCGAGGGCGAGGCGGAGAGCAAGGAAGAGGACATTATCGAGGAGGAGGAGGAAGAGCTGGGCGAGGTAAAGGCCGAGGAGTTTGAGGAGGAGTATCTGGAAGACGATACCCTCGAAGAGGATCACCTGGATGACAGCGACGACTCCTTTTCGCCGCCGCCGCCCGCCAAGCAGCGCAAGATAAGCACTTCCAAGGCAGCTCAGCCGTCCTTGCGCCAAACGCGCAGCCGCGATACACCAAAGATCTCGCCGAAGGCTGTGCCAGTGGCCAAGAAGGAGGCCAAGTCGCCTCCCAAGCAGGAGCGCTCACTCGTCAAGAAACGCAGAGCCGCCAAATAA
Protein Sequence: MIDRVYAGDGMPGHICLECRLLFEHCYRFKQMCKRAETLLRQYPLTGNWPAPLEKPRAPMMTVAPKKVVVIPAAAAPEAPAPETPKKLLNTLAKSTPMVIENVQVLETSLLPHRKVAVSSPVTTSRRSHAYELKVENNQELSMDDVQNMLEDMANELDKEFESEAAPKASPVKPKVLNKSSIRILNKGPSAPVEPRLATPQVKRDDSGNVAIVTEVLDAEVPLDDQDDPTKNAETVATDVFPCPDCERSFPLQQLLDIHRLNHTRSRSFQCPHCEKSFFSKYDLAKHNFIHTGERPFKCAVCNKGFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHEVVHSSNLPFPCQHCERSFSTASKLARHLVAHAGKRAYPCKYCPKSYMLSHHLSRHLRMHTQTSDASFVCSDCKISYSTYNSLLEHSRIHATATLKCPMCREQIEDADSVDAHMEQHKESERHACEFCDHIFLTQSCLQRHIEDDHVMDMEPYQTEDYEEEGEGEAESKEEDIIEEEEEELGEVKAEEFEEEYLEDDTLEEDHLDDSDDSFSPPPPAKQRKISTSKAAQPSLRQTRSRDTPKISPKAVPVAKKEAKSPPKQERSLVKKRRAAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00605752;
90% Identity: iTF_00602796;
80% Identity: -