Basic Information

Insect: Drosophila biarmipes
Gene Symbol: -
Assembly: GCA_018148935.1
Location: JAECYG010000274.1:13326877-13329170[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.9e-05 0.0023 18.0 5.6 1 23 306 328 306 328 0.98

2 8 7.8e-06 0.00046 20.2 2.3 1 23 334 356 334 356 0.99

3 8 6e-06 0.00036 20.6 3.0 1 23 362 384 362 384 0.98

4 8 0.00014 0.0084 16.3 1.4 1 23 390 412 390 412 0.98

5 8 1.7e-05 0.001 19.2 0.4 1 23 418 440 418 440 0.97

6 8 5.9e-05 0.0035 17.5 0.1 1 23 446 468 446 468 0.98

7 8 1.4e-07 8.6e-06 25.7 0.8 1 23 474 496 474 496 0.98

8 8 7.9e-05 0.0047 17.1 0.9 1 23 502 524 502 524 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.9e-05	0.0023	18.0	5.6	1	23	306	328	306	328	0.98
2	8	7.8e-06	0.00046	20.2	2.3	1	23	334	356	334	356	0.99
3	8	6e-06	0.00036	20.6	3.0	1	23	362	384	362	384	0.98
4	8	0.00014	0.0084	16.3	1.4	1	23	390	412	390	412	0.98
5	8	1.7e-05	0.001	19.2	0.4	1	23	418	440	418	440	0.97
6	8	5.9e-05	0.0035	17.5	0.1	1	23	446	468	446	468	0.98
7	8	1.4e-07	8.6e-06	25.7	0.8	1	23	474	496	474	496	0.98
8	8	7.9e-05	0.0047	17.1	0.9	1	23	502	524	502	524	0.99

Sequence Information

Coding Sequence: ATGACCGGCAAGGCGGGCGGGGTGGTGGTGCTCAACTGCCGGACGTGCACGCGTGCCTGCAAGCAGCACAAGCCGCTGCATGAGGAGATCGAGCTGGGACCGGAGGGCAGCACCACGCTGGCCAGCATGCTCCACTACTGCGCCGGGCTCTCCTTCGAGCCGCAGGACGGCGCCGCCATGCCGCAGCACATCTGCCTCAACTGCCTGCACCTGCTCGAGCAGGCGTTCAACTTCAAGCGCATGGTCATCGACTCGGATGAGCTGCTCCGCCTGGGCCTGGACGAGGCGCACGGCACCAGCCACCAGCAGAGTCAGCAGGGCGAGCAGAACCACCAGCAGCAGCACCACCACCAGAATCCCGACCAGCAACAGCAGGCGGGCGATCCCGGCGAGGAGTACCTCATGATCGAGATGCTCAACGAGGAGCAGGAGCCCGGCAGTTTGGAAGAACAAGAAGTCGAGTCGGAGCGCCATGAGCACCTGAACGATGAGGAGTTCGTCATCGAGGAGGTGGCCGACCAGGAGGAGGAGCTGACGGAGGAGGAGCAACAGCATGAACAAGCGGGCGGTCAGGAGGAGCACATCACCATGGAGAGTGTTCATGAGTTCCAGCCCGCCGAAGTGGAGTATGTGACGATCAAGGACGAGTTCGAGACGATCGTCACCGAGGAGGATGAGATCGAGATAATGGACGAGTCCGGAGCCCACGACGAGATACTGGACGGCCAGATGATTGTGATACCCGCCGAAGGAGCCATAGACGAGGTCATCGGCGAGGAGGCCCTCGAGCTGGACGAGAACGAGCGCGAGGAGCATCTGCTGCCGGAAGGGGAGGAGGGGGATGTCTGCGAGGAGGAGGACTTCCTGGAGGAGTCGCTGGACTCAACGCCTCTGACCACGGGCGAAGCTCTGCCGCATGTGTGCACCGTGTGCCAGAAGGCCTTCCGCCAGCAGTGCCGACTCAACCAGCACATGCGCTCCCACGTCGACGAGAAGCACTACGAGTGCGAGGAGTGTGGCAAGCGGCTGAAGCACCTGCGCAACTACAAGGAGCACATGCTGACCCACACCAATGTCAAGCCGCACCAGTGCAACATCTGCGATCGCTTCTACCGCACCACCTCCAGTCTGGCGGCCCACAAGCGAACGCATGCGGAGGAGAAGCCCTACAACTGCGATCAGTGCGGGCGCGGGTATGCGGCCTACGACCACCTGAGACGCCACAAGCTCACCCACACGGGCGAAAGGCCGTATGCGTGTGATCTGTGCGACAAGGCGTACTACGATTCGTCCTCCCTGCGCCAGCACAAGATAAGCCATACCGGCGAGAAGGCCTTCACCTGCGAGATCTGCGGCGTGGGACTGTCCCAGAAGTCGGGCTACAAGAAGCACCTGCTCGTCCACACCGGCGCCAAGCCGCACAAGTGTCCCATCTGCGGGCGGGCCTTTACCTTCACCAGCAACCTCAATGCCCACGTCCGACTGCATTCCGGCGAAAAGCCGTTCAAGTGCGAAGTCTGCATGAAGGCCTTTCCCACCAAGAAGCGTCTGAATAGCCACTTGCGTGTCCACAACAAGGAGACGCCGGTGTTGGCCACCGCCGGCGCGCAGTCGATCGATCATCGCCGACGGGCGGCGGCAGGAGGAGCAGGCGGCGGCAGCGGCGGCGGCGGAGGAGCCGCCAACCTGCACCTAACCGAAGTACCTGAGCAGCCGGTGTCCACCTCCAAAGTGGTGGTGGTGCTTTGA
Protein Sequence: MTGKAGGVVVLNCRTCTRACKQHKPLHEEIELGPEGSTTLASMLHYCAGLSFEPQDGAAMPQHICLNCLHLLEQAFNFKRMVIDSDELLRLGLDEAHGTSHQQSQQGEQNHQQQHHHQNPDQQQQAGDPGEEYLMIEMLNEEQEPGSLEEQEVESERHEHLNDEEFVIEEVADQEEELTEEEQQHEQAGGQEEHITMESVHEFQPAEVEYVTIKDEFETIVTEEDEIEIMDESGAHDEILDGQMIVIPAEGAIDEVIGEEALELDENEREEHLLPEGEEGDVCEEEDFLEESLDSTPLTTGEALPHVCTVCQKAFRQQCRLNQHMRSHVDEKHYECEECGKRLKHLRNYKEHMLTHTNVKPHQCNICDRFYRTTSSLAAHKRTHAEEKPYNCDQCGRGYAAYDHLRRHKLTHTGERPYACDLCDKAYYDSSSLRQHKISHTGEKAFTCEICGVGLSQKSGYKKHLLVHTGAKPHKCPICGRAFTFTSNLNAHVRLHSGEKPFKCEVCMKAFPTKKRLNSHLRVHNKETPVLATAGAQSIDHRRRAAAGGAGGGSGGGGGAANLHLTEVPEQPVSTSKVVVVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00507759;
90% Identity: iTF_00602784; iTF_00605006;
80% Identity: -