Basic Information

Insect: Drosophila biarmipes
Gene Symbol: -
Assembly: GCA_018148935.1
Location: JAECYG010000101.1:4600164-4602471[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.4e-06 0.00032 20.7 4.6 1 23 152 174 152 174 0.98

2 17 1.7e-06 9.9e-05 22.3 2.0 1 23 180 202 180 202 0.99

3 17 4.1e-06 0.00025 21.1 2.0 1 23 208 230 208 230 0.97

4 17 6.8e-05 0.0041 17.3 2.4 2 23 236 257 235 257 0.97

5 17 2.5e-06 0.00015 21.8 2.4 1 23 263 285 263 285 0.99

6 17 0.0019 0.12 12.7 1.0 1 23 291 313 291 313 0.97

7 17 0.0065 0.39 11.0 2.0 1 23 319 341 319 341 0.99

8 17 5.8e-07 3.4e-05 23.8 7.6 1 23 347 369 347 369 0.99

9 17 0.00048 0.029 14.6 3.7 1 23 375 397 375 397 0.98

10 17 2.8e-06 0.00017 21.6 1.7 1 23 403 425 403 425 0.98

11 17 0.00037 0.022 15.0 0.7 1 23 431 453 431 453 0.98

12 17 0.019 1.2 9.6 0.9 1 23 459 481 459 481 0.97

13 17 4e-07 2.4e-05 24.3 2.8 1 23 487 509 487 509 0.96

14 17 1.2e-05 0.00074 19.6 5.5 1 23 515 537 515 537 0.99

15 17 1.4e-06 8.6e-05 22.5 3.3 2 23 543 564 543 564 0.98

16 17 2.9e-06 0.00017 21.6 0.5 1 23 570 592 570 592 0.98

17 17 0.00015 0.0088 16.2 4.7 1 23 598 621 598 621 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.4e-06	0.00032	20.7	4.6	1	23	152	174	152	174	0.98
2	17	1.7e-06	9.9e-05	22.3	2.0	1	23	180	202	180	202	0.99
3	17	4.1e-06	0.00025	21.1	2.0	1	23	208	230	208	230	0.97
4	17	6.8e-05	0.0041	17.3	2.4	2	23	236	257	235	257	0.97
5	17	2.5e-06	0.00015	21.8	2.4	1	23	263	285	263	285	0.99
6	17	0.0019	0.12	12.7	1.0	1	23	291	313	291	313	0.97
7	17	0.0065	0.39	11.0	2.0	1	23	319	341	319	341	0.99
8	17	5.8e-07	3.4e-05	23.8	7.6	1	23	347	369	347	369	0.99
9	17	0.00048	0.029	14.6	3.7	1	23	375	397	375	397	0.98
10	17	2.8e-06	0.00017	21.6	1.7	1	23	403	425	403	425	0.98
11	17	0.00037	0.022	15.0	0.7	1	23	431	453	431	453	0.98
12	17	0.019	1.2	9.6	0.9	1	23	459	481	459	481	0.97
13	17	4e-07	2.4e-05	24.3	2.8	1	23	487	509	487	509	0.96
14	17	1.2e-05	0.00074	19.6	5.5	1	23	515	537	515	537	0.99
15	17	1.4e-06	8.6e-05	22.5	3.3	2	23	543	564	543	564	0.98
16	17	2.9e-06	0.00017	21.6	0.5	1	23	570	592	570	592	0.98
17	17	0.00015	0.0088	16.2	4.7	1	23	598	621	598	621	0.98

Sequence Information

Coding Sequence: ATGCAATTTCCAAGAAGCGCAGAAAACCACCTGATCTTCCTAAACATGGAGTCGTCGATGTGCCGGGTGTGCCTGAAGAGCTGCGAAAACATGGTCAATATCTACGAAGAAACGCAGGGAGCAGAGGTTTCCATTGCGACTATAATATCTGACTGCACCGGCTTTACGATAGAGCAAGGTGATCAGTTTCCCGAAACCATTTGCACTTGCTGCATCCAGGATGCGAAAAATGCCTATGATGTAAAGAAAACATACGAAAGGAGCCACCGATTTTACTGCCTATTGAGCAAGGGCTCGCTGGAAGCGGATCTGCTCGAGGAAGAACTGTGCAAAGAATCGGATTGCGAGAGCGTGGCTTCGAGCAGGAAAGGAGGACCTCATGAAAGACCAGCTAAGAACCAAATATTCAACTGTCTTGATGAAGACTGGGACCCCGATAACGACAACAGCTCGCATAAGTGCTCTAAGTGTCCAAAGACCTTCAAGTCGGAACAGGTTCTAAAGCGACACCTTCGAACCCACTCAGAGAAACGGCCATTCAAGTGCTCCCAGTGCTCAAAAGCGTTTAGAATTAACTCACTTCTTCAAAGACACCTGCGATCGCATACCGGGGAACGATTCTTCAAGTGCATCGAGTGCCCGAAGGCTTTTACACATAACTCAACTCTTAAGGAACATATGCGACTGCACACAGGGAAACTCATAAAGTGTACCCACTGCTCGAAGGGGTTTGCCAGTAATACGCGTCTCAAGCGACACTTACTGATACACTCAGGAATCCGAGCTTTTAAGTGCACCCAGTGCCCAAAGACTTTTCCGCAGAATTGCCTGCTTCAAGATCATTTGCGTGTTCACACAGGCGAGAGGCCGTTTAAGTGTTCCCACTGCTCAGCGGATTTTGCGCAGAAATCAATTCTTCGACTCCACATGGTGGTGCACACAGGGGAACGACCGTTCAAGTGCACACAGTGCCTATCAACGTTTTCCCTCAAGAATCGACTTACGGAGCATTTGCGAGTACACTCGGAAGAACGGCCATTCCAGTGTACCCATTGCCCGAAGGCTTTTAAACATAACTCACACCTCAAGGAGCATGTGCGAACGCACTTGGGAGACCGGCCGTTCAAGTGTTCCCACTGCTCAAAATCTTTTAAGCTAAAGGCAATTCTTAAAAAACATCTGATTATGCACACAGGTGAACGACAATTTAAATGTACCCAATGCTCAAAGACTTTTGCAGAGAACACGCTTCTTCAGAAACACATTCGATTACACACAGGGGTAAGACCGTTCAAGTGTGCCTACTGCTCAAAGGCGTTCACAAGCAGACCGATTCTTTATAGACACTTGCAAGTGCACTCCAACGCAAACCCGTTTAAGTGTACGCAGTGCTCCAAGATGTTCCTAAGCAAGGCAATTCTTCGGGGTCACCTGCGAGTCCACTCTGGAGAACGACCCTTTAAGTGTACCCAGTGTGGAAAATCTTTTGTCAGGAAGTCACACCTTAAGGAACACTCAGCCGTACACACTGGAGAACGACCGTTCAAGTGCACCCACTGCTCAGAGGACTTTAGGTATAATTCACATCTTCAGGATCACTTGCGGGTGCATACAGGAAAACTCCCAAAGTGTTCTCACTGTTCGAAAACATTCGAAAACAGTTCAGCTCTGCAGGAACACTTGCGAACTCACACAAGAGAAAAGCCATTTAAATGTAATCAGTGCCCGAAGACATTTCCCACAAATTTGGCTCTCCAGGCGCACTTTCGAGTCCACACCGGAGAAAGACCCTTCAAGTGTTCACAGTGCTTAGCCTGTTTTACGCAGGAGACGAGTCTTAAGCGGCACCTGCGGCGAACCCATGTCCAATAA
Protein Sequence: MQFPRSAENHLIFLNMESSMCRVCLKSCENMVNIYEETQGAEVSIATIISDCTGFTIEQGDQFPETICTCCIQDAKNAYDVKKTYERSHRFYCLLSKGSLEADLLEEELCKESDCESVASSRKGGPHERPAKNQIFNCLDEDWDPDNDNSSHKCSKCPKTFKSEQVLKRHLRTHSEKRPFKCSQCSKAFRINSLLQRHLRSHTGERFFKCIECPKAFTHNSTLKEHMRLHTGKLIKCTHCSKGFASNTRLKRHLLIHSGIRAFKCTQCPKTFPQNCLLQDHLRVHTGERPFKCSHCSADFAQKSILRLHMVVHTGERPFKCTQCLSTFSLKNRLTEHLRVHSEERPFQCTHCPKAFKHNSHLKEHVRTHLGDRPFKCSHCSKSFKLKAILKKHLIMHTGERQFKCTQCSKTFAENTLLQKHIRLHTGVRPFKCAYCSKAFTSRPILYRHLQVHSNANPFKCTQCSKMFLSKAILRGHLRVHSGERPFKCTQCGKSFVRKSHLKEHSAVHTGERPFKCTHCSEDFRYNSHLQDHLRVHTGKLPKCSHCSKTFENSSALQEHLRTHTREKPFKCNQCPKTFPTNLALQAHFRVHTGERPFKCSQCLACFTQETSLKRHLRRTHVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -